Wall clock time and date at job start Mon Mar 30 2020 04:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 O 1.45203 * 109.47003 * 0.30576 * 8 7 6 10 10 C 1.34231 * 117.00081 * 180.02562 * 9 8 7 11 11 O 1.20824 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00121 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.46990 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46903 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.46845 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00598 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00034 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99667 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47013 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46763 * 119.99914 * 19 17 15 22 22 H 1.48503 * 109.46866 * 240.00028 * 19 17 15 23 23 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 24 24 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 25 25 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 26 26 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 27 27 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 28 28 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 29 29 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 30 30 H 1.09000 * 109.47362 * 120.30005 * 8 7 6 31 31 H 1.08998 * 109.47323 * 240.30929 * 8 7 6 32 32 H 1.09001 * 109.47259 * 300.00094 * 12 10 9 33 33 H 1.09001 * 109.47111 * 60.00450 * 12 10 9 34 34 H 1.08999 * 109.47461 * 299.99681 * 13 12 10 35 35 H 1.08991 * 109.47411 * 60.00354 * 13 12 10 36 36 H 1.09001 * 109.47249 * 299.99933 * 14 13 12 37 37 H 1.09001 * 109.47207 * 60.00343 * 14 13 12 38 38 H 0.97000 * 119.99559 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 8 3.0113 -3.4503 -0.0013 10 6 2.7660 -4.7700 -0.0020 11 8 1.6269 -5.1727 -0.0026 12 6 3.9114 -5.7494 -0.0032 13 6 3.3615 -7.1772 -0.0045 14 6 4.5244 -8.1715 -0.0051 15 6 3.9828 -9.5778 -0.0057 16 1 2.9160 -9.7457 -0.0052 17 6 4.8493 -10.6503 -0.0069 18 7 6.1486 -10.4460 -0.0070 19 14 4.1780 -12.3935 -0.0083 20 1 2.6936 -12.3523 -0.0086 21 1 4.6532 -13.1058 -1.2216 22 1 4.6537 -13.1081 1.2034 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 5.0836 1.7155 1.0262 27 1 5.6089 0.9983 -0.5158 28 1 4.5560 2.4334 -0.5147 29 1 4.4892 -1.3485 -0.0129 30 1 1.2591 -2.7521 0.8895 31 1 1.2584 -2.7517 -0.8905 32 1 4.5210 -5.5944 -0.8935 33 1 4.5219 -5.5956 0.8865 34 1 2.7517 -7.3325 0.8855 35 1 2.7513 -7.3307 -0.8944 36 1 5.1346 -8.0164 -0.8949 37 1 5.1343 -8.0179 0.8851 38 1 6.7582 -11.2005 -0.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848866015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:28 Heat of formation + Delta-G solvation = -51.368562 kcal Electronic energy + Delta-G solvation = -19052.243564 eV Core-core repulsion = 15895.197944 eV Total energy + Delta-G solvation = -3157.045620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34649 -41.37657 -37.76982 -36.13538 -35.05898 -34.07815 -32.32425 -30.55161 -29.98907 -28.00883 -26.12573 -25.20966 -22.94309 -21.73424 -21.17786 -20.57221 -18.67659 -18.30559 -17.83080 -17.74685 -16.82783 -16.57632 -16.39778 -15.76741 -15.19892 -14.75833 -14.60530 -14.28425 -14.14824 -14.02142 -13.78283 -13.61115 -13.15378 -13.00159 -12.96188 -12.81138 -12.64905 -12.49405 -12.39455 -11.90219 -11.82973 -11.56869 -11.54380 -11.32888 -11.10028 -10.52690 -10.24201 -9.37782 -8.18815 -6.28196 0.84474 1.24159 1.41217 1.41990 1.54581 1.56397 1.60432 1.70191 2.43391 3.14866 3.48615 3.74103 3.92571 4.10379 4.18812 4.22715 4.23389 4.36231 4.40195 4.43549 4.46200 4.68337 4.69272 4.77987 4.94747 4.94944 4.98783 5.06141 5.08727 5.19676 5.43821 5.56356 5.61791 5.76524 5.88975 6.05213 6.28719 6.65057 6.79931 6.88010 7.40513 8.92938 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.002788 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.119678 B =10040.360859 C =10678.823742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.078 3.922 3 N -0.329 5.329 4 N -0.380 5.380 5 C 0.093 3.907 6 C 0.084 3.916 7 C -0.270 4.270 8 C 0.154 3.846 9 O -0.353 6.353 10 C 0.472 3.528 11 O -0.539 6.539 12 C -0.104 4.104 13 C -0.087 4.087 14 C 0.025 3.975 15 C -0.545 4.545 16 H 0.053 0.947 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.201 0.799 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 24.245 -0.110 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 N -0.152 5.152 4 N -0.161 5.161 5 C -0.047 4.047 6 C -0.063 4.063 7 C -0.282 4.282 8 C 0.079 3.921 9 O -0.270 6.270 10 C 0.317 3.683 11 O -0.428 6.428 12 C -0.141 4.141 13 C -0.125 4.125 14 C -0.012 4.012 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.218 0.782 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.011 25.486 -0.106 25.800 hybrid contribution -0.169 -1.835 0.015 1.843 sum -4.180 23.651 -0.091 24.018 Atomic orbital electron populations 1.20339 0.84789 1.04270 1.04115 1.22544 0.98193 0.89167 0.98871 1.77244 0.87647 1.23234 1.27110 1.48753 1.05852 1.05315 1.56165 1.22232 0.82749 0.94929 1.04767 1.22721 0.99906 0.84863 0.98817 1.19760 0.93635 0.94051 1.20728 1.20933 0.85439 0.83265 1.02457 1.86415 1.39257 1.17393 1.83913 1.24158 0.91110 0.82114 0.70940 1.90644 1.25498 1.79884 1.46821 1.21501 0.94641 0.90741 1.07198 1.21280 0.98334 0.91852 1.01065 1.19021 0.93446 0.92872 0.95903 1.21717 0.93147 0.92969 1.50468 0.92843 1.25894 0.95138 1.03697 0.94798 1.70073 1.02767 1.32414 1.51728 0.85462 0.78744 0.79343 0.77898 1.19122 1.20228 1.20222 0.89235 0.89470 0.90031 0.89447 0.86799 0.88858 0.78208 0.90598 0.90584 0.86139 0.86153 0.93373 0.93356 0.97752 0.97765 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.26 71.24 0.73 -0.45 16 2 C 0.08 1.72 7.22 43.10 0.31 2.03 16 3 N -0.33 -7.78 12.57 -47.38 -0.60 -8.37 16 4 N -0.38 -7.25 4.01 -369.56 -1.48 -8.73 16 5 C 0.09 0.87 11.47 127.77 1.47 2.34 16 6 C 0.08 1.65 10.82 83.54 0.90 2.56 16 7 C -0.27 -6.04 6.08 -20.14 -0.12 -6.16 16 8 C 0.15 3.61 5.65 71.24 0.40 4.01 16 9 O -0.35 -9.14 9.51 -51.42 -0.49 -9.63 16 10 C 0.47 14.58 7.96 71.23 0.57 15.14 16 11 O -0.54 -20.02 15.73 21.97 0.35 -19.68 16 12 C -0.10 -3.19 5.81 29.85 0.17 -3.02 16 13 C -0.09 -3.62 4.44 30.60 0.14 -3.48 16 14 C 0.02 1.26 4.97 29.85 0.15 1.40 16 15 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 16 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 19 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.17 7.96 -2.39 -0.02 1.15 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.20 2.96 7.84 -2.91 -0.02 2.94 16 30 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 31 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 32 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -72.73 332.82 6.53 -66.19 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.03 Total: 4.99 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.41 Total: -15.97 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.79 Total: -72.38 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.14 Total: -29.31 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -72.73 6.53 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848866015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.826 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds