Wall clock time and date at job start Mon Mar 30 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99813 * 2 1 4 4 H 1.48493 * 109.47335 * 270.00105 * 3 2 1 5 5 H 1.48500 * 109.47019 * 30.00640 * 3 2 1 6 6 H 1.48502 * 109.46992 * 149.99822 * 3 2 1 7 7 C 1.37875 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99415 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00422 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46977 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46963 * 180.02562 * 11 10 9 13 13 O 1.20820 * 119.99780 * 359.97438 * 12 11 10 14 14 O 1.34235 * 119.99771 * 180.02562 * 12 11 10 15 15 C 1.45194 * 116.99634 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46861 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47060 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.36890 * 126.39537 * 270.03108 * 18 17 16 20 20 C 1.34669 * 106.81617 * 179.97438 * 19 18 17 21 21 N 1.34134 * 108.02026 * 0.02562 * 20 19 18 22 22 C 1.30493 * 109.25480 * 0.02562 * 21 20 19 23 23 H 0.96997 * 120.00772 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46811 * 60.00390 * 9 7 2 25 25 H 1.09000 * 109.46730 * 299.99817 * 9 7 2 26 26 H 1.09004 * 109.46773 * 60.00196 * 10 9 7 27 27 H 1.08995 * 109.46853 * 300.00129 * 10 9 7 28 28 H 1.08997 * 109.46866 * 59.99638 * 11 10 9 29 29 H 1.09005 * 109.46660 * 299.99958 * 11 10 9 30 30 H 1.09002 * 109.47630 * 60.00133 * 15 14 12 31 31 H 1.08998 * 109.47431 * 299.99389 * 15 14 12 32 32 H 1.09006 * 109.47212 * 59.99783 * 16 15 14 33 33 H 1.09002 * 109.47266 * 300.00011 * 16 15 14 34 34 H 1.09002 * 109.47343 * 60.00395 * 17 16 15 35 35 H 1.08998 * 109.47519 * 299.99774 * 17 16 15 36 36 H 1.07996 * 126.59258 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.99042 * 180.26007 * 20 19 18 38 38 H 1.08006 * 125.64594 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 6 6.0539 -4.0572 -0.0040 13 8 5.2688 -4.9755 -0.0047 14 8 7.3737 -4.3024 -0.0038 15 6 7.7854 -5.6948 -0.0061 16 6 9.3133 -5.7748 -0.0061 17 6 9.7471 -7.2420 -0.0079 18 7 11.2101 -7.3187 -0.0073 19 6 12.0219 -7.3590 -1.1088 20 6 13.2887 -7.4258 -0.6570 21 7 13.2515 -7.4267 0.6839 22 6 12.0098 -7.3636 1.0800 23 1 -0.4851 0.8400 0.0004 24 1 3.8751 -0.6804 0.8888 25 1 3.8745 -0.6799 -0.8912 26 1 3.6579 -3.1497 -0.8925 27 1 3.6586 -3.1509 0.8875 28 1 5.9148 -2.1232 0.8881 29 1 5.9149 -2.1218 -0.8918 30 1 7.3962 -6.1873 -0.8972 31 1 7.3953 -6.1906 0.8828 32 1 9.7030 -5.2822 0.8848 33 1 9.7031 -5.2791 -0.8952 34 1 9.3576 -7.7350 -0.8986 35 1 9.3574 -7.7373 0.8814 36 1 11.7069 -7.3409 -2.1417 37 1 14.1789 -7.4671 -1.2672 38 1 11.6768 -7.3483 2.1073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848867386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:41 Heat of formation + Delta-G solvation = -44.228372 kcal Electronic energy + Delta-G solvation = -18641.637341 eV Core-core repulsion = 15484.901343 eV Total energy + Delta-G solvation = -3156.735998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.38918 -40.45508 -37.08734 -35.55615 -34.49382 -32.27949 -31.87853 -29.79131 -28.82422 -26.59040 -24.14860 -22.55641 -21.70524 -21.32056 -20.97251 -19.95317 -18.02906 -17.35033 -16.98939 -16.80635 -16.02966 -15.56714 -15.54775 -14.67399 -14.32822 -14.17203 -14.05116 -13.68266 -13.20908 -13.15807 -13.00639 -12.70571 -12.17915 -11.93708 -11.87185 -11.66608 -11.09745 -10.86432 -10.75690 -10.48680 -10.33948 -10.07340 -9.99760 -9.82066 -9.71351 -9.22704 -8.89350 -8.56593 -6.06167 -4.04903 1.65053 2.21431 2.30705 2.71647 2.84376 3.28323 3.35999 3.38195 4.01748 4.28608 4.31519 4.37235 4.42361 4.55025 4.59575 4.73744 4.88326 5.07274 5.08860 5.25013 5.26824 5.37458 5.40309 5.42607 5.51354 5.86381 5.88280 6.35729 6.37118 6.39875 6.53347 6.77380 6.79293 7.24894 7.34521 7.71375 7.75076 7.82958 8.51790 8.99365 9.55277 11.07247 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.054221 B = 0.002343 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.285312 B =11949.120971 C =12253.729571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.115 4.115 12 C 0.462 3.538 13 O -0.504 6.504 14 O -0.362 6.362 15 C 0.068 3.932 16 C -0.136 4.136 17 C 0.108 3.892 18 N -0.459 5.459 19 C -0.056 4.056 20 C -0.031 4.031 21 N -0.497 5.497 22 C 0.182 3.818 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.389 -13.779 -1.004 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.152 4.152 12 C 0.305 3.695 13 O -0.391 6.391 14 O -0.280 6.280 15 C -0.007 4.007 16 C -0.174 4.174 17 C -0.015 4.015 18 N -0.142 5.142 19 C -0.188 4.188 20 C -0.179 4.179 21 N -0.215 5.215 22 C -0.100 4.100 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.191 0.809 37 H 0.186 0.814 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 23.545 -14.007 -0.490 27.401 hybrid contribution -0.449 0.820 -0.603 1.113 sum 23.096 -13.187 -1.093 26.618 Atomic orbital electron populations 1.69911 1.06314 1.26911 1.51009 1.25049 0.94767 0.99208 0.94585 0.86760 0.80329 0.83570 0.78488 1.20288 1.21383 1.18982 1.21114 0.89344 0.94597 1.50900 0.90915 1.19598 0.97461 0.91619 0.96443 1.21403 0.88462 1.00310 1.02840 1.21725 0.99883 0.88300 1.05303 1.24343 0.79511 0.93842 0.71805 1.90666 1.56423 1.47029 1.44935 1.86528 1.27285 1.29486 1.84687 1.22755 0.93848 0.81042 1.03049 1.21892 0.94449 0.95831 1.05247 1.21743 0.76908 0.97354 1.05498 1.45557 1.07364 1.54069 1.07166 1.22791 0.91430 1.11749 0.92865 1.22338 0.96492 1.07801 0.91259 1.70310 1.19369 1.19577 1.12217 1.25066 0.85658 1.05510 0.93769 0.92704 0.96382 0.96835 0.91812 0.91784 0.88004 0.88035 0.90939 0.90864 0.89771 0.89845 0.88428 0.88186 0.80869 0.81360 0.77894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.80 4.44 -26.73 -0.12 -1.92 16 11 C -0.11 -1.68 5.81 -27.88 -0.16 -1.85 16 12 C 0.46 6.77 7.96 36.01 0.29 7.05 16 13 O -0.50 -8.82 15.73 -18.74 -0.29 -9.12 16 14 O -0.36 -4.36 10.22 -39.27 -0.40 -4.76 16 15 C 0.07 0.58 5.47 37.16 0.20 0.78 16 16 C -0.14 -0.82 5.92 -26.73 -0.16 -0.98 16 17 C 0.11 0.48 6.15 -4.04 -0.02 0.45 16 18 N -0.46 -3.12 2.75 -118.58 -0.33 -3.44 16 19 C -0.06 -0.40 11.58 -16.56 -0.19 -0.59 16 20 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 21 N -0.50 -5.30 11.25 -14.66 -0.16 -5.47 16 22 C 0.18 1.46 12.56 -90.38 -1.14 0.33 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.20 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -35.07 329.62 -8.02 -43.08 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.84 Total: -3.88 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.06 Total: -11.00 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.28 Total: -35.95 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.70 Total: -13.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.07 -8.02 -43.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848867386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.146 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds