Wall clock time and date at job start Mon Mar 30 2020 04:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99813 * 2 1 4 4 H 1.48493 * 109.47335 * 270.00105 * 3 2 1 5 5 H 1.48500 * 109.47019 * 30.00640 * 3 2 1 6 6 H 1.48502 * 109.46992 * 149.99822 * 3 2 1 7 7 C 1.37875 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99415 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00422 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46977 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46963 * 180.02562 * 11 10 9 13 13 O 1.20820 * 119.99780 * 359.97438 * 12 11 10 14 14 O 1.34235 * 119.99771 * 180.02562 * 12 11 10 15 15 C 1.45194 * 116.99634 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46861 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47060 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.36890 * 126.39537 * 270.03108 * 18 17 16 20 20 C 1.34669 * 106.81617 * 179.97438 * 19 18 17 21 21 N 1.34134 * 108.02026 * 0.02562 * 20 19 18 22 22 C 1.30493 * 109.25480 * 0.02562 * 21 20 19 23 23 H 0.96997 * 120.00772 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46811 * 60.00390 * 9 7 2 25 25 H 1.09000 * 109.46730 * 299.99817 * 9 7 2 26 26 H 1.09004 * 109.46773 * 60.00196 * 10 9 7 27 27 H 1.08995 * 109.46853 * 300.00129 * 10 9 7 28 28 H 1.08997 * 109.46866 * 59.99638 * 11 10 9 29 29 H 1.09005 * 109.46660 * 299.99958 * 11 10 9 30 30 H 1.09002 * 109.47630 * 60.00133 * 15 14 12 31 31 H 1.08998 * 109.47431 * 299.99389 * 15 14 12 32 32 H 1.09006 * 109.47212 * 59.99783 * 16 15 14 33 33 H 1.09002 * 109.47266 * 300.00011 * 16 15 14 34 34 H 1.09002 * 109.47343 * 60.00395 * 17 16 15 35 35 H 1.08998 * 109.47519 * 299.99774 * 17 16 15 36 36 H 1.07996 * 126.59258 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.99042 * 180.26007 * 20 19 18 38 38 H 1.08006 * 125.64594 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 6 6.0539 -4.0572 -0.0040 13 8 5.2688 -4.9755 -0.0047 14 8 7.3737 -4.3024 -0.0038 15 6 7.7854 -5.6948 -0.0061 16 6 9.3133 -5.7748 -0.0061 17 6 9.7471 -7.2420 -0.0079 18 7 11.2101 -7.3187 -0.0073 19 6 12.0219 -7.3590 -1.1088 20 6 13.2887 -7.4258 -0.6570 21 7 13.2515 -7.4267 0.6839 22 6 12.0098 -7.3636 1.0800 23 1 -0.4851 0.8400 0.0004 24 1 3.8751 -0.6804 0.8888 25 1 3.8745 -0.6799 -0.8912 26 1 3.6579 -3.1497 -0.8925 27 1 3.6586 -3.1509 0.8875 28 1 5.9148 -2.1232 0.8881 29 1 5.9149 -2.1218 -0.8918 30 1 7.3962 -6.1873 -0.8972 31 1 7.3953 -6.1906 0.8828 32 1 9.7030 -5.2822 0.8848 33 1 9.7031 -5.2791 -0.8952 34 1 9.3576 -7.7350 -0.8986 35 1 9.3574 -7.7373 0.8814 36 1 11.7069 -7.3409 -2.1417 37 1 14.1789 -7.4671 -1.2672 38 1 11.6768 -7.3483 2.1073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848867386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:40 Heat of formation + Delta-G solvation = -64.513349 kcal Electronic energy + Delta-G solvation = -18642.516964 eV Core-core repulsion = 15484.901343 eV Total energy + Delta-G solvation = -3157.615621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.92563 -41.53611 -38.06093 -36.23730 -36.12923 -34.19442 -32.59468 -30.51042 -30.28418 -27.36968 -25.70087 -23.25417 -22.49288 -22.26230 -21.74527 -21.35467 -18.95158 -18.78424 -18.14634 -17.90254 -17.11309 -16.38157 -16.24185 -16.08344 -15.54369 -14.99057 -14.83675 -14.78063 -14.39002 -14.00955 -13.94759 -13.83381 -13.62161 -13.25466 -12.80273 -12.55718 -12.52625 -12.34839 -11.89751 -11.76858 -11.59188 -11.49332 -11.44614 -11.29990 -10.94354 -10.74601 -10.61017 -9.44650 -8.27298 -6.32904 1.10559 1.18638 1.40103 1.42794 1.54358 1.55116 2.00590 2.23750 2.39352 3.08067 3.62410 3.64675 3.80449 3.90384 3.98079 4.05091 4.13623 4.17303 4.19058 4.33044 4.42902 4.59674 4.66178 4.70968 4.85250 4.86637 4.92179 4.98026 5.02146 5.34704 5.36747 5.53843 5.57657 5.68034 5.83278 6.28256 6.30065 6.74688 6.75975 7.15256 7.31543 8.89917 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.054221 B = 0.002343 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.285312 B =11949.120971 C =12253.729571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.538 4.538 8 H 0.023 0.977 9 C -0.011 4.011 10 C -0.085 4.085 11 C -0.107 4.107 12 C 0.469 3.531 13 O -0.541 6.541 14 O -0.359 6.359 15 C 0.062 3.938 16 C -0.122 4.122 17 C 0.110 3.890 18 N -0.457 5.457 19 C -0.051 4.051 20 C -0.061 4.061 21 N -0.542 5.542 22 C 0.175 3.825 23 H 0.266 0.734 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.200 0.800 37 H 0.178 0.822 38 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.706 -12.864 -1.175 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.199 4.199 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.576 4.576 8 H 0.041 0.959 9 C -0.048 4.048 10 C -0.123 4.123 11 C -0.145 4.145 12 C 0.314 3.686 13 O -0.431 6.431 14 O -0.276 6.276 15 C -0.013 4.013 16 C -0.160 4.160 17 C -0.012 4.012 18 N -0.140 5.140 19 C -0.184 4.184 20 C -0.208 4.208 21 N -0.261 5.261 22 C -0.108 4.108 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.217 0.783 37 H 0.195 0.805 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 25.898 -13.111 -0.665 29.035 hybrid contribution -1.216 0.413 -0.556 1.400 sum 24.681 -12.698 -1.222 27.783 Atomic orbital electron populations 1.70093 1.08630 1.28255 1.52658 1.26170 0.95729 1.04062 0.93980 0.85532 0.79717 0.77269 0.79345 1.19002 1.21411 1.15817 1.21529 0.92578 0.92896 1.50639 0.95874 1.19550 0.93559 0.94117 0.97622 1.21154 0.92351 0.97722 1.01106 1.21554 0.95977 0.89118 1.07802 1.24196 0.80110 0.93360 0.70922 1.90665 1.57510 1.48055 1.46842 1.86491 1.25419 1.31698 1.83964 1.23048 0.95405 0.79196 1.03604 1.21770 0.92382 0.96970 1.04920 1.21874 0.75550 0.96421 1.07365 1.45687 1.08141 1.53389 1.06750 1.23208 0.90967 1.10200 0.94044 1.22678 0.97899 1.09096 0.91103 1.70259 1.21163 1.21254 1.13383 1.25563 0.85315 1.04803 0.95075 0.92536 0.94926 0.95070 0.93687 0.93693 0.85495 0.85455 0.90508 0.90350 0.90049 0.90247 0.86797 0.86296 0.78316 0.80512 0.75527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.52 13.96 21.45 0.30 -60.23 16 2 C 0.00 -0.19 5.47 84.65 0.46 0.27 16 3 Si 0.96 42.94 27.47 68.60 1.88 44.82 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 7 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 8 H 0.02 1.50 7.99 -2.91 -0.02 1.48 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.09 -3.27 4.44 30.60 0.14 -3.13 16 11 C -0.11 -2.85 5.81 29.85 0.17 -2.67 16 12 C 0.47 12.81 7.96 71.24 0.57 13.38 16 13 O -0.54 -18.56 15.73 21.98 0.35 -18.21 16 14 O -0.36 -7.67 10.22 -51.47 -0.53 -8.20 16 15 C 0.06 0.90 5.47 71.98 0.39 1.29 16 16 C -0.12 -1.14 5.92 30.59 0.18 -0.96 16 17 C 0.11 0.64 6.15 86.38 0.53 1.17 16 18 N -0.46 -5.18 2.75 -529.07 -1.46 -6.64 16 19 C -0.05 -0.63 11.58 83.08 0.96 0.33 16 20 C -0.06 -1.04 11.87 83.52 0.99 -0.05 16 21 N -0.54 -11.32 11.25 -200.31 -2.25 -13.57 16 22 C 0.17 2.55 12.56 180.27 2.26 4.81 16 23 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 25 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 26 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 27 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 28 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.13 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.08 1.09 8.13 -2.39 -0.02 1.08 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -78.89 329.62 6.30 -72.59 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 0.97 Total: 6.35 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 7.03 Total: -16.93 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -3.41 Total: -80.43 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.18 Total: -26.41 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -78.89 6.30 -72.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848867386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.080 kcal (2) G-P(sol) polarization free energy of solvation -78.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds