Wall clock time and date at job start Mon Mar 30 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 5 5 N 1.46500 * 109.47043 * 202.87111 * 3 2 1 6 6 C 1.34779 * 119.99793 * 274.99879 * 5 3 2 7 7 O 1.21578 * 120.00118 * 0.02562 * 6 5 3 8 8 N 1.34778 * 119.99594 * 179.97438 * 6 5 3 9 9 C 1.46498 * 119.99664 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47177 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99569 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00166 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99787 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00119 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46990 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47353 * 119.99840 * 14 12 10 17 17 H 1.48504 * 109.47006 * 239.99985 * 14 12 10 18 18 C 1.52997 * 109.47306 * 322.87033 * 3 2 1 19 19 C 1.53176 * 109.54575 * 179.82276 * 18 3 2 20 20 C 1.53107 * 109.16033 * 183.24183 * 19 18 3 21 21 O 1.42905 * 109.48635 * 57.47257 * 20 19 18 22 22 C 1.42909 * 114.09708 * 298.89171 * 21 20 19 23 23 C 1.53090 * 109.41349 * 61.15697 * 22 21 20 24 24 H 4.18743 * 15.03955 * 0.02562 * 4 2 1 25 25 H 0.97004 * 120.00223 * 94.99969 * 5 3 2 26 26 H 0.96995 * 120.00471 * 0.02562 * 8 6 5 27 27 H 1.09004 * 109.47300 * 300.00396 * 9 8 6 28 28 H 1.09000 * 109.47257 * 60.00791 * 9 8 6 29 29 H 0.97009 * 119.99860 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.54454 * 300.00252 * 18 3 2 31 31 H 1.08996 * 109.52436 * 303.05748 * 19 18 3 32 32 H 1.09004 * 109.52332 * 63.24916 * 19 18 3 33 33 H 1.09001 * 109.40193 * 297.49701 * 20 19 18 34 34 H 1.08990 * 109.48391 * 177.50140 * 20 19 18 35 35 H 1.08998 * 109.47898 * 301.17199 * 22 21 20 36 36 H 1.08999 * 109.47695 * 181.13799 * 22 21 20 37 37 H 1.09003 * 109.51999 * 182.48119 * 23 22 21 38 38 H 1.08999 * 109.52123 * 62.29880 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1267 -1.0197 5 7 3.1337 1.2735 0.5368 6 6 3.2620 2.3421 -0.2745 7 8 2.9724 2.2499 -1.4517 8 7 3.7102 3.5132 0.2196 9 6 3.8501 4.6746 -0.6624 10 6 4.3660 5.8480 0.1302 11 1 4.5688 5.7395 1.1854 12 6 4.5779 7.0602 -0.4916 13 7 4.3304 7.1924 -1.7764 14 14 5.2180 8.5145 0.4907 15 1 5.4155 8.1079 1.9053 16 1 6.5122 8.9664 -0.0802 17 1 4.2345 9.6254 0.4282 18 6 3.1565 -1.1491 0.8707 19 6 4.6883 -1.1527 0.8683 20 6 5.1893 -2.3536 1.6752 21 8 4.6578 -3.5575 1.1179 22 6 3.2307 -3.6296 1.1385 23 6 2.6511 -2.4813 0.3083 24 1 -1.0500 0.0005 -0.0001 25 1 3.3644 1.3472 1.4762 26 1 3.9408 3.5870 1.1588 27 1 4.5520 4.4405 -1.4629 28 1 2.8797 4.9241 -1.0914 29 1 4.4799 8.0452 -2.2140 30 1 2.7938 -1.0230 1.8908 31 1 5.0508 -1.2276 -0.1569 32 1 5.0554 -0.2306 1.3191 33 1 4.8616 -2.2566 2.7102 34 1 6.2781 -2.3865 1.6399 35 1 2.8775 -3.5493 2.1666 36 1 2.9088 -4.5817 0.7167 37 1 1.5626 -2.5085 0.3589 38 1 2.9712 -2.5838 -0.7286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854027924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:12 Heat of formation + Delta-G solvation = -35.607919 kcal Electronic energy + Delta-G solvation = -19888.149768 eV Core-core repulsion = 16731.787581 eV Total energy + Delta-G solvation = -3156.362187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08359 -38.98858 -36.34793 -34.10718 -32.95421 -32.51780 -32.04636 -31.19062 -27.98667 -26.53031 -23.85288 -23.50844 -22.38662 -20.65795 -20.03710 -18.35998 -18.08658 -16.57283 -16.23295 -15.99585 -15.86664 -15.25116 -14.92759 -14.71752 -14.35962 -13.99698 -13.62887 -13.28176 -13.11358 -12.81934 -12.54266 -11.97031 -11.82100 -11.57220 -11.43680 -10.94609 -10.91980 -10.88068 -10.58183 -10.49005 -10.30663 -10.16142 -9.72550 -9.41182 -9.35001 -8.97403 -8.72101 -7.79381 -6.15326 -4.21890 2.64145 2.90951 3.24038 3.30851 3.33888 3.57006 3.67263 3.86996 4.26562 4.32685 4.52629 4.54828 4.71391 4.78912 4.97346 5.10195 5.14972 5.20353 5.20904 5.40865 5.43834 5.45854 5.62067 5.70308 5.82852 5.91193 6.03871 6.12375 6.75287 6.95258 7.08777 7.50191 7.54254 7.57130 7.70335 7.89235 8.03315 8.76035 8.92325 9.31546 9.47355 10.94963 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.003712 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.317038 B = 7541.018102 C = 8128.749949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C 0.280 3.720 4 H 0.108 0.892 5 N -0.748 5.748 6 C 0.694 3.306 7 O -0.596 6.596 8 N -0.728 5.728 9 C 0.266 3.734 10 C -0.541 4.541 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.088 4.088 19 C -0.151 4.151 20 C 0.062 3.938 21 O -0.384 6.384 22 C 0.063 3.937 23 C -0.149 4.149 24 H 0.215 0.785 25 H 0.393 0.607 26 H 0.386 0.614 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.265 0.735 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -19.688 9.245 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.188 4.188 3 C 0.174 3.826 4 H 0.125 0.875 5 N -0.404 5.404 6 C 0.394 3.606 7 O -0.474 6.474 8 N -0.379 5.379 9 C 0.145 3.855 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.108 4.108 19 C -0.189 4.189 20 C -0.015 4.015 21 O -0.303 6.303 22 C -0.014 4.014 23 C -0.187 4.187 24 H 0.232 0.768 25 H 0.227 0.773 26 H 0.218 0.782 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.415 -19.700 7.885 21.356 hybrid contribution 0.004 1.333 1.386 1.923 sum -2.411 -18.367 9.270 20.714 Atomic orbital electron populations 1.24874 0.95847 0.99842 1.01240 1.23600 0.94816 1.00386 0.99961 1.17529 0.82913 0.82731 0.99424 0.87451 1.45186 1.72773 1.10179 1.12299 1.16155 0.78858 0.80540 0.85069 1.90882 1.57477 1.83867 1.15224 1.45715 1.68538 1.10263 1.13431 1.18997 0.97254 0.79960 0.89247 1.21259 1.45700 0.95164 0.95843 0.91900 1.24950 0.95271 0.98840 0.95001 1.69994 1.47428 1.25474 1.09359 0.86356 0.78543 0.82021 0.79938 1.19672 1.20793 1.20827 1.21395 0.95883 0.93772 0.99707 1.22250 0.94580 0.99326 1.02695 1.22595 0.99083 0.84065 0.95751 1.87940 1.20369 1.39035 1.82949 1.22562 0.81070 0.98737 0.99006 1.22204 1.01483 0.93879 1.01134 0.76836 0.77342 0.78160 0.95679 0.95761 0.92513 0.90289 0.90364 0.90099 0.93212 0.88659 0.93230 0.88786 0.90330 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 19.25 29.55 0.57 -2.02 16 2 C -0.19 -2.68 11.65 -37.13 -0.43 -3.11 16 3 C 0.28 3.81 2.02 -70.72 -0.14 3.66 16 4 H 0.11 1.68 7.58 -51.93 -0.39 1.29 16 5 N -0.75 -11.18 4.41 -61.45 -0.27 -11.45 16 6 C 0.69 14.43 8.51 -86.91 -0.74 13.69 16 7 O -0.60 -15.13 16.01 5.30 0.08 -15.04 16 8 N -0.73 -15.63 5.55 -66.41 -0.37 -15.99 16 9 C 0.27 7.19 5.43 -5.19 -0.03 7.16 16 10 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 11 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 14 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.09 -0.86 1.88 -90.44 -0.17 -1.04 16 19 C -0.15 -1.42 5.22 -26.59 -0.14 -1.56 16 20 C 0.06 0.52 6.84 37.21 0.25 0.78 16 21 O -0.38 -3.91 10.77 -35.23 -0.38 -4.29 16 22 C 0.06 0.51 6.84 37.20 0.25 0.77 16 23 C -0.15 -1.33 5.11 -26.59 -0.14 -1.46 16 24 H 0.21 1.99 7.80 -54.09 -0.42 1.57 16 25 H 0.39 4.62 8.43 -40.82 -0.34 4.28 16 26 H 0.39 7.03 8.33 -40.82 -0.34 6.69 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.74 7.58 -51.93 -0.39 0.34 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -34.16 324.63 -7.07 -41.23 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.61 Total: 6.87 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.13 Total: 3.43 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.10 Total: -52.97 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.29 Total: -19.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.16 -7.07 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.623 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds