Wall clock time and date at job start Mon Mar 30 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 5 5 N 1.46500 * 109.47043 * 202.87111 * 3 2 1 6 6 C 1.34779 * 119.99793 * 274.99879 * 5 3 2 7 7 O 1.21578 * 120.00118 * 0.02562 * 6 5 3 8 8 N 1.34778 * 119.99594 * 179.97438 * 6 5 3 9 9 C 1.46498 * 119.99664 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47177 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99569 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00166 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99787 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00119 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46990 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47353 * 119.99840 * 14 12 10 17 17 H 1.48504 * 109.47006 * 239.99985 * 14 12 10 18 18 C 1.52997 * 109.47306 * 322.87033 * 3 2 1 19 19 C 1.53176 * 109.54575 * 179.82276 * 18 3 2 20 20 C 1.53107 * 109.16033 * 183.24183 * 19 18 3 21 21 O 1.42905 * 109.48635 * 57.47257 * 20 19 18 22 22 C 1.42909 * 114.09708 * 298.89171 * 21 20 19 23 23 C 1.53090 * 109.41349 * 61.15697 * 22 21 20 24 24 H 4.18743 * 15.03955 * 0.02562 * 4 2 1 25 25 H 0.97004 * 120.00223 * 94.99969 * 5 3 2 26 26 H 0.96995 * 120.00471 * 0.02562 * 8 6 5 27 27 H 1.09004 * 109.47300 * 300.00396 * 9 8 6 28 28 H 1.09000 * 109.47257 * 60.00791 * 9 8 6 29 29 H 0.97009 * 119.99860 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.54454 * 300.00252 * 18 3 2 31 31 H 1.08996 * 109.52436 * 303.05748 * 19 18 3 32 32 H 1.09004 * 109.52332 * 63.24916 * 19 18 3 33 33 H 1.09001 * 109.40193 * 297.49701 * 20 19 18 34 34 H 1.08990 * 109.48391 * 177.50140 * 20 19 18 35 35 H 1.08998 * 109.47898 * 301.17199 * 22 21 20 36 36 H 1.08999 * 109.47695 * 181.13799 * 22 21 20 37 37 H 1.09003 * 109.51999 * 182.48119 * 23 22 21 38 38 H 1.08999 * 109.52123 * 62.29880 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1267 -1.0197 5 7 3.1337 1.2735 0.5368 6 6 3.2620 2.3421 -0.2745 7 8 2.9724 2.2499 -1.4517 8 7 3.7102 3.5132 0.2196 9 6 3.8501 4.6746 -0.6624 10 6 4.3660 5.8480 0.1302 11 1 4.5688 5.7395 1.1854 12 6 4.5779 7.0602 -0.4916 13 7 4.3304 7.1924 -1.7764 14 14 5.2180 8.5145 0.4907 15 1 5.4155 8.1079 1.9053 16 1 6.5122 8.9664 -0.0802 17 1 4.2345 9.6254 0.4282 18 6 3.1565 -1.1491 0.8707 19 6 4.6883 -1.1527 0.8683 20 6 5.1893 -2.3536 1.6752 21 8 4.6578 -3.5575 1.1179 22 6 3.2307 -3.6296 1.1385 23 6 2.6511 -2.4813 0.3083 24 1 -1.0500 0.0005 -0.0001 25 1 3.3644 1.3472 1.4762 26 1 3.9408 3.5870 1.1588 27 1 4.5520 4.4405 -1.4629 28 1 2.8797 4.9241 -1.0914 29 1 4.4799 8.0452 -2.2140 30 1 2.7938 -1.0230 1.8908 31 1 5.0508 -1.2276 -0.1569 32 1 5.0554 -0.2306 1.3191 33 1 4.8616 -2.2566 2.7102 34 1 6.2781 -2.3865 1.6399 35 1 2.8775 -3.5493 2.1666 36 1 2.9088 -4.5817 0.7167 37 1 1.5626 -2.5085 0.3589 38 1 2.9712 -2.5838 -0.7286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854027924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:11 Heat of formation + Delta-G solvation = -61.007386 kcal Electronic energy + Delta-G solvation = -19889.251172 eV Core-core repulsion = 16731.787581 eV Total energy + Delta-G solvation = -3157.463591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28983 -40.19701 -37.51339 -36.07767 -34.55025 -33.81959 -33.39823 -31.92953 -29.60593 -28.02713 -24.88206 -24.58521 -23.92483 -22.06053 -21.17035 -19.82267 -19.37745 -18.09185 -17.56590 -16.98617 -16.90164 -16.66275 -16.42693 -15.78434 -15.58028 -15.49876 -15.01201 -14.48989 -14.30971 -14.08244 -13.93143 -13.72939 -13.24691 -12.87137 -12.75347 -12.28213 -12.24083 -12.21118 -11.67452 -11.62184 -11.44954 -11.36087 -11.16841 -11.09521 -10.82099 -10.52974 -10.42479 -9.69824 -8.28472 -6.44990 1.39105 1.45491 1.45636 1.59190 1.84650 2.16837 2.25227 2.41808 3.01418 3.06717 3.29979 3.49338 3.70471 3.77468 3.94522 4.08720 4.31306 4.33650 4.45787 4.59418 4.71644 4.80535 4.83035 4.88129 5.04929 5.08146 5.14983 5.16170 5.26082 5.31456 5.45145 5.48356 5.65322 5.84370 6.21071 6.30678 6.65068 6.66913 7.23540 7.28145 7.68335 8.84175 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.003712 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.317038 B = 7541.018102 C = 8128.749949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.230 4.230 3 C 0.279 3.721 4 H 0.078 0.922 5 N -0.722 5.722 6 C 0.694 3.306 7 O -0.646 6.646 8 N -0.720 5.720 9 C 0.285 3.715 10 C -0.553 4.553 11 H 0.085 0.915 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.987 3.013 15 H -0.252 1.252 16 H -0.279 1.279 17 H -0.280 1.280 18 C -0.077 4.077 19 C -0.150 4.150 20 C 0.063 3.937 21 O -0.405 6.405 22 C 0.063 3.937 23 C -0.145 4.145 24 H 0.247 0.753 25 H 0.413 0.587 26 H 0.406 0.594 27 H -0.014 1.014 28 H -0.017 1.017 29 H 0.269 0.731 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 -20.145 12.260 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.232 4.232 3 C 0.174 3.826 4 H 0.096 0.904 5 N -0.379 5.379 6 C 0.394 3.606 7 O -0.528 6.528 8 N -0.374 5.374 9 C 0.162 3.838 10 C -0.591 4.591 11 H 0.103 0.897 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.810 3.190 15 H -0.175 1.175 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.096 4.096 19 C -0.188 4.188 20 C -0.014 4.014 21 O -0.324 6.324 22 C -0.013 4.013 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.250 0.750 26 H 0.241 0.759 27 H 0.004 0.996 28 H 0.001 0.999 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.480 -20.221 10.983 23.145 hybrid contribution -0.056 1.386 0.393 1.442 sum -2.536 -18.835 11.375 22.149 Atomic orbital electron populations 1.25746 0.96771 0.97994 0.99438 1.23869 0.95492 1.02134 1.01676 1.17653 0.83219 0.82854 0.98884 0.90387 1.44897 1.71280 1.09080 1.12603 1.16304 0.78255 0.81263 0.84819 1.90848 1.59415 1.84778 1.17804 1.45281 1.69006 1.09386 1.13719 1.18421 0.93970 0.82112 0.89306 1.21626 1.45482 0.95188 0.96808 0.89705 1.26080 0.95175 1.02377 0.96032 1.70157 1.48637 1.26582 1.11630 0.85079 0.77603 0.77344 0.78966 1.17545 1.20430 1.20538 1.21352 0.95979 0.92468 0.99757 1.22247 0.94312 1.00332 1.01893 1.22674 0.99586 0.82863 0.96259 1.87920 1.21499 1.39672 1.83302 1.22681 0.80118 0.98737 0.99797 1.22178 1.01835 0.93781 1.00564 0.73623 0.74998 0.75902 0.99571 0.99879 0.92251 0.88316 0.92395 0.89667 0.91299 0.87926 0.91540 0.87546 0.89770 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 19.25 74.32 1.43 -2.97 16 2 C -0.23 -6.47 11.65 31.12 0.36 -6.10 16 3 C 0.28 7.59 2.02 43.18 0.09 7.68 16 4 H 0.08 2.59 7.58 -2.39 -0.02 2.58 16 5 N -0.72 -21.29 4.41 -466.58 -2.06 -23.35 16 6 C 0.69 29.49 8.51 179.05 1.52 31.02 16 7 O -0.65 -34.40 16.01 -3.96 -0.06 -34.46 16 8 N -0.72 -31.33 5.55 -482.29 -2.68 -34.01 16 9 C 0.29 16.00 5.43 85.63 0.46 16.47 16 10 C -0.55 -30.24 9.28 25.60 0.24 -30.01 16 11 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 12 C 0.00 0.16 5.46 84.65 0.46 0.62 16 13 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 14 Si 0.99 42.32 29.54 68.60 2.03 44.34 16 15 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 C -0.08 -1.40 1.88 -10.68 -0.02 -1.42 16 19 C -0.15 -2.68 5.22 30.69 0.16 -2.52 16 20 C 0.06 0.94 6.84 72.02 0.49 1.43 16 21 O -0.40 -7.55 10.77 -148.98 -1.60 -9.15 16 22 C 0.06 0.89 6.84 72.01 0.49 1.38 16 23 C -0.15 -2.43 5.11 30.68 0.16 -2.27 16 24 H 0.25 3.86 7.80 -4.42 -0.03 3.83 16 25 H 0.41 8.95 8.43 -92.71 -0.78 8.17 16 26 H 0.41 14.32 8.33 -92.71 -0.77 13.55 16 27 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 28 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.42 7.58 -2.39 -0.02 1.40 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.31 7.36 -2.39 -0.02 1.30 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -76.92 324.63 1.27 -75.65 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.49 Total: 24.00 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.85 Total: 13.31 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.45 Total: -113.69 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.67 Total: -43.61 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -76.92 1.27 -75.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.646 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds