Wall clock time and date at job start Mon Mar 30 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27643 * 125.76625 * 2 1 4 4 O 1.41378 * 113.16918 * 180.33360 * 3 2 1 5 5 C 1.44253 * 107.50664 * 342.62832 * 4 3 2 6 6 H 1.09003 * 111.01403 * 267.00474 * 5 4 3 7 7 C 1.50699 * 111.00824 * 143.17623 * 5 4 3 8 8 O 1.21278 * 120.00234 * 359.60014 * 7 5 4 9 9 N 1.34777 * 119.99900 * 179.60109 * 7 5 4 10 10 C 1.46502 * 120.00321 * 179.97438 * 9 7 5 11 11 H 1.09003 * 110.01502 * 326.39431 * 10 9 7 12 12 C 1.53879 * 110.02991 * 87.83123 * 10 9 7 13 13 C 1.54266 * 106.59627 * 119.29014 * 12 10 9 14 14 C 1.54886 * 104.19756 * 23.60959 * 13 12 10 15 15 H 1.08999 * 110.91766 * 80.44880 * 14 13 12 16 16 C 1.50706 * 110.75748 * 203.74723 * 14 13 12 17 17 H 1.07999 * 120.00196 * 113.32949 * 16 14 13 18 18 C 1.37879 * 119.99394 * 293.32817 * 16 14 13 19 19 N 1.31514 * 120.00338 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99426 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47555 * 90.00165 * 20 18 16 22 22 H 1.48503 * 109.46814 * 210.00053 * 20 18 16 23 23 H 1.48496 * 109.47318 * 329.99545 * 20 18 16 24 24 C 1.54267 * 110.03557 * 205.00089 * 10 9 7 25 25 C 1.51750 * 125.75306 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47239 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46891 * 119.97577 * 1 2 3 28 28 H 1.08997 * 109.46902 * 239.97331 * 1 2 3 29 29 H 0.97006 * 120.00227 * 359.97438 * 9 7 5 30 30 H 1.09004 * 110.03230 * 238.57102 * 12 10 9 31 31 H 1.09000 * 110.03084 * 359.95591 * 12 10 9 32 32 H 1.09010 * 110.48574 * 264.93399 * 13 12 10 33 33 H 1.08997 * 110.49193 * 142.28868 * 13 12 10 34 34 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 35 35 H 1.08997 * 110.48405 * 98.42686 * 24 10 9 36 36 H 1.08993 * 110.59703 * 335.83977 * 24 10 9 37 37 H 1.08994 * 110.80020 * 77.02522 * 25 2 1 38 38 H 1.08994 * 110.83945 * 313.49557 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 -0.0076 5 6 3.7719 -0.6500 0.3978 6 1 3.9331 -0.7266 1.4732 7 6 4.8834 -1.3272 -0.3618 8 8 5.5150 -0.7087 -1.1921 9 7 5.1757 -2.6202 -0.1184 10 6 6.2558 -3.2787 -0.8571 11 1 6.3107 -2.8816 -1.8708 12 6 7.5965 -3.0647 -0.1329 13 6 8.1242 -4.4654 0.2404 14 6 7.4329 -5.4136 -0.7704 15 1 7.9476 -5.4005 -1.7311 16 6 7.3616 -6.8164 -0.2242 17 1 6.4042 -7.2540 0.0171 18 6 8.5189 -7.5411 -0.0327 19 7 9.6847 -7.0084 -0.3270 20 14 8.4305 -9.2801 0.6437 21 1 8.3086 -10.2429 -0.4803 22 1 9.6646 -9.5742 1.4157 23 1 7.2484 -9.4057 1.5335 24 6 6.0156 -4.8020 -0.8986 25 6 2.3937 -1.2315 0.0006 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5135 -0.8903 28 1 -0.3633 -0.5142 0.8897 29 1 4.6708 -3.1148 0.5460 30 1 8.3029 -2.5639 -0.7950 31 1 7.4436 -2.4702 0.7678 32 1 7.8382 -4.7214 1.2607 33 1 9.2072 -4.5085 0.1247 34 1 10.4987 -7.5184 -0.1926 35 1 5.5598 -5.0906 -1.8457 36 1 5.3884 -5.1141 -0.0637 37 1 2.4342 -1.6797 -0.9921 38 1 2.0513 -1.9555 0.7398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854751913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:25 Heat of formation + Delta-G solvation = -31.009893 kcal Electronic energy + Delta-G solvation = -20007.973734 eV Core-core repulsion = 16851.810932 eV Total energy + Delta-G solvation = -3156.162802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81983 -39.14525 -37.05181 -34.16817 -33.78760 -32.25228 -30.99583 -28.77443 -28.22092 -27.20481 -24.75065 -23.69101 -20.86932 -20.13579 -19.64029 -19.17164 -17.61783 -16.81100 -16.50293 -16.06373 -15.56959 -14.93588 -14.69597 -14.28351 -14.27298 -13.80593 -13.51082 -13.12607 -12.89393 -12.70988 -12.54283 -12.39238 -11.98264 -11.83993 -11.19704 -11.09169 -10.99386 -10.95339 -10.63008 -10.36402 -10.07588 -9.96225 -9.61539 -9.48386 -9.25966 -8.88224 -8.74491 -8.41561 -6.05414 -4.09064 1.49176 2.43433 2.64154 3.26927 3.34349 3.35422 3.37804 3.71622 4.16669 4.24286 4.39541 4.48849 4.74784 4.96466 5.01724 5.06092 5.24148 5.26452 5.31618 5.48078 5.58826 5.71866 5.73937 6.21007 6.25612 6.51861 6.57610 6.66675 6.80017 6.84127 7.08774 7.19129 7.25255 7.61425 7.64505 7.81166 7.97018 8.26475 8.37461 8.93435 9.55370 11.04196 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.003658 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.178282 B = 7652.779962 C = 8171.700739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.082 3.918 3 N -0.291 5.291 4 O -0.170 6.170 5 C 0.023 3.977 6 H 0.112 0.888 7 C 0.514 3.486 8 O -0.519 6.519 9 N -0.711 5.711 10 C 0.138 3.862 11 H 0.082 0.918 12 C -0.135 4.135 13 C -0.103 4.103 14 C 0.052 3.948 15 H 0.036 0.964 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.120 4.120 25 C -0.144 4.144 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 8.798 3.156 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 N -0.033 5.033 4 O -0.187 6.187 5 C -0.040 4.040 6 H 0.129 0.871 7 C 0.297 3.703 8 O -0.394 6.394 9 N -0.363 5.363 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.174 4.174 13 C -0.141 4.141 14 C 0.033 3.967 15 H 0.054 0.946 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.159 4.159 25 C -0.184 4.184 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.233 0.767 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.108 10.446 2.481 19.359 hybrid contribution -0.021 -2.139 0.850 2.302 sum -16.129 8.307 3.331 18.446 Atomic orbital electron populations 1.20449 0.85032 1.04738 1.04198 1.26301 0.98265 0.91927 0.94618 1.77941 0.89308 1.23205 1.12821 1.91418 1.15112 1.24392 1.87802 1.23598 0.94925 0.84932 1.00508 0.87089 1.19938 0.84234 0.82673 0.83491 1.90750 1.51152 1.64019 1.33458 1.46272 1.37105 1.10595 1.42341 1.21951 0.85657 0.93671 0.95218 0.89993 1.22651 0.95701 0.99911 0.99129 1.22346 1.01105 0.91010 0.99630 1.19559 0.88250 0.93389 0.95497 0.94580 1.21078 0.92619 0.98409 1.43292 0.92643 1.24987 0.95565 0.97925 0.95427 1.69956 0.97475 1.37083 1.48052 0.86636 0.77452 0.85067 0.79060 1.20716 1.21287 1.19973 1.22766 1.01796 0.90838 1.00458 1.23098 0.90542 0.98903 1.05815 0.89849 0.89084 0.89129 0.76736 0.92392 0.93120 0.93403 0.91491 0.92987 0.92730 0.92040 0.87376 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.49 36.01 0.38 -0.02 16 2 C 0.08 0.74 7.45 -78.54 -0.59 0.15 16 3 N -0.29 -3.83 12.45 35.66 0.44 -3.39 16 4 O -0.17 -2.68 11.83 -30.20 -0.36 -3.04 16 5 C 0.02 0.28 4.25 -26.95 -0.11 0.16 16 6 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.51 7.87 7.13 -10.99 -0.08 7.80 16 8 O -0.52 -10.46 16.24 -13.28 -0.22 -10.68 16 9 N -0.71 -9.96 4.98 -52.72 -0.26 -10.22 16 10 C 0.14 2.41 3.25 -66.81 -0.22 2.19 16 11 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 12 C -0.14 -2.58 6.59 -25.61 -0.17 -2.75 16 13 C -0.10 -2.29 5.76 -25.07 -0.14 -2.43 16 14 C 0.05 1.22 2.73 -89.77 -0.24 0.97 16 15 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 16 C -0.52 -13.45 8.49 -34.44 -0.29 -13.75 16 17 H 0.06 1.41 7.77 -52.49 -0.41 1.00 16 18 C 0.06 1.69 5.36 -17.82 -0.10 1.60 16 19 N -0.89 -24.95 12.42 55.43 0.69 -24.27 16 20 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 C -0.12 -2.25 5.94 -25.07 -0.15 -2.39 16 25 C -0.14 -1.20 6.62 -26.43 -0.18 -1.38 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.40 4.35 8.36 -40.82 -0.34 4.00 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 32 H 0.05 1.08 8.04 -51.92 -0.42 0.66 16 33 H 0.07 1.65 7.64 -51.93 -0.40 1.25 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.07 7.63 -51.93 -0.40 0.68 16 37 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -33.10 319.11 -7.49 -40.59 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.69 Total: 0.46 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.89 Total: -9.84 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.87 Total: -37.88 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.57 Total: -13.72 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.10 -7.49 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854751913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.579 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds