Wall clock time and date at job start Mon Mar 30 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27643 * 125.76625 * 2 1 4 4 O 1.41378 * 113.16918 * 180.33360 * 3 2 1 5 5 C 1.44253 * 107.50664 * 342.62832 * 4 3 2 6 6 H 1.09003 * 111.01403 * 267.00474 * 5 4 3 7 7 C 1.50699 * 111.00824 * 143.17623 * 5 4 3 8 8 O 1.21278 * 120.00234 * 359.60014 * 7 5 4 9 9 N 1.34777 * 119.99900 * 179.60109 * 7 5 4 10 10 C 1.46502 * 120.00321 * 179.97438 * 9 7 5 11 11 H 1.09003 * 110.01502 * 326.39431 * 10 9 7 12 12 C 1.53879 * 110.02991 * 87.83123 * 10 9 7 13 13 C 1.54266 * 106.59627 * 119.29014 * 12 10 9 14 14 C 1.54886 * 104.19756 * 23.60959 * 13 12 10 15 15 H 1.08999 * 110.91766 * 80.44880 * 14 13 12 16 16 C 1.50706 * 110.75748 * 203.74723 * 14 13 12 17 17 H 1.07999 * 120.00196 * 113.32949 * 16 14 13 18 18 C 1.37879 * 119.99394 * 293.32817 * 16 14 13 19 19 N 1.31514 * 120.00338 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99426 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47555 * 90.00165 * 20 18 16 22 22 H 1.48503 * 109.46814 * 210.00053 * 20 18 16 23 23 H 1.48496 * 109.47318 * 329.99545 * 20 18 16 24 24 C 1.54267 * 110.03557 * 205.00089 * 10 9 7 25 25 C 1.51750 * 125.75306 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47239 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46891 * 119.97577 * 1 2 3 28 28 H 1.08997 * 109.46902 * 239.97331 * 1 2 3 29 29 H 0.97006 * 120.00227 * 359.97438 * 9 7 5 30 30 H 1.09004 * 110.03230 * 238.57102 * 12 10 9 31 31 H 1.09000 * 110.03084 * 359.95591 * 12 10 9 32 32 H 1.09010 * 110.48574 * 264.93399 * 13 12 10 33 33 H 1.08997 * 110.49193 * 142.28868 * 13 12 10 34 34 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 35 35 H 1.08997 * 110.48405 * 98.42686 * 24 10 9 36 36 H 1.08993 * 110.59703 * 335.83977 * 24 10 9 37 37 H 1.08994 * 110.80020 * 77.02522 * 25 2 1 38 38 H 1.08994 * 110.83945 * 313.49557 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 -0.0076 5 6 3.7719 -0.6500 0.3978 6 1 3.9331 -0.7266 1.4732 7 6 4.8834 -1.3272 -0.3618 8 8 5.5150 -0.7087 -1.1921 9 7 5.1757 -2.6202 -0.1184 10 6 6.2558 -3.2787 -0.8571 11 1 6.3107 -2.8816 -1.8708 12 6 7.5965 -3.0647 -0.1329 13 6 8.1242 -4.4654 0.2404 14 6 7.4329 -5.4136 -0.7704 15 1 7.9476 -5.4005 -1.7311 16 6 7.3616 -6.8164 -0.2242 17 1 6.4042 -7.2540 0.0171 18 6 8.5189 -7.5411 -0.0327 19 7 9.6847 -7.0084 -0.3270 20 14 8.4305 -9.2801 0.6437 21 1 8.3086 -10.2429 -0.4803 22 1 9.6646 -9.5742 1.4157 23 1 7.2484 -9.4057 1.5335 24 6 6.0156 -4.8020 -0.8986 25 6 2.3937 -1.2315 0.0006 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5135 -0.8903 28 1 -0.3633 -0.5142 0.8897 29 1 4.6708 -3.1148 0.5460 30 1 8.3029 -2.5639 -0.7950 31 1 7.4436 -2.4702 0.7678 32 1 7.8382 -4.7214 1.2607 33 1 9.2072 -4.5085 0.1247 34 1 10.4987 -7.5184 -0.1926 35 1 5.5598 -5.0906 -1.8457 36 1 5.3884 -5.1141 -0.0637 37 1 2.4342 -1.6797 -0.9921 38 1 2.0513 -1.9555 0.7398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854751913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:25 Heat of formation + Delta-G solvation = -53.315160 kcal Electronic energy + Delta-G solvation = -20008.940963 eV Core-core repulsion = 16851.810932 eV Total energy + Delta-G solvation = -3157.130031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79319 -40.34238 -38.61108 -35.41960 -34.87235 -33.98827 -32.00834 -29.96918 -29.30049 -28.73852 -26.13033 -25.17253 -22.06087 -21.37552 -20.87076 -20.69558 -18.69608 -18.51253 -17.51115 -17.25201 -16.69124 -16.57320 -16.15214 -15.67518 -15.45147 -14.67941 -14.48825 -14.30609 -14.03813 -13.73400 -13.69365 -13.47927 -13.14437 -13.02839 -12.80965 -12.71183 -12.56420 -12.41738 -12.12520 -11.69582 -11.67903 -11.42393 -11.16427 -11.04147 -10.82308 -10.46143 -10.44680 -10.12262 -8.09214 -6.19243 0.81425 1.35105 1.44832 1.45918 1.55123 1.57982 2.38304 2.46909 3.00054 3.22581 3.36854 3.55938 3.62911 3.85759 3.94479 4.01417 4.16557 4.43156 4.56869 4.67000 4.71499 4.73799 4.79658 4.84054 4.89533 4.99837 5.04278 5.16767 5.22378 5.31039 5.38843 5.60669 5.66566 5.91508 5.99412 6.30899 6.37873 6.49343 6.92615 7.12254 7.48978 9.00028 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.003658 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.178282 B = 7652.779962 C = 8171.700739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.106 3.894 3 N -0.339 5.339 4 O -0.224 6.224 5 C 0.021 3.979 6 H 0.138 0.862 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.151 3.849 11 H 0.068 0.932 12 C -0.127 4.127 13 C -0.092 4.092 14 C 0.039 3.961 15 H -0.001 1.001 16 C -0.525 4.525 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.954 3.046 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.261 1.261 24 C -0.104 4.104 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.419 0.581 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.418 7.684 4.597 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 N -0.085 5.085 4 O -0.238 6.238 5 C -0.041 4.041 6 H 0.155 0.845 7 C 0.300 3.700 8 O -0.454 6.454 9 N -0.346 5.346 10 C 0.046 3.954 11 H 0.087 0.913 12 C -0.165 4.165 13 C -0.131 4.131 14 C 0.020 3.980 15 H 0.017 0.983 16 C -0.564 4.564 17 H 0.082 0.918 18 C -0.190 4.190 19 N -0.563 5.563 20 Si 0.780 3.220 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.185 1.185 24 C -0.142 4.142 25 C -0.178 4.178 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.140 0.860 29 H 0.257 0.743 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.539 9.306 3.951 22.000 hybrid contribution 0.974 -1.811 0.372 2.090 sum -18.565 7.495 4.323 20.482 Atomic orbital electron populations 1.20731 0.81640 1.05437 1.06602 1.27120 0.99951 0.91233 0.90303 1.78001 0.88212 1.24958 1.17316 1.91374 1.17580 1.26124 1.88675 1.23724 0.95385 0.83936 1.01008 0.84491 1.20582 0.84331 0.82414 0.82660 1.90728 1.53307 1.65288 1.36048 1.45968 1.36109 1.10415 1.42157 1.21532 0.85831 0.93240 0.94793 0.91340 1.22536 0.96471 0.97868 0.99659 1.22124 0.98962 0.92837 0.99134 1.19545 0.91273 0.93374 0.93799 0.98253 1.21502 0.92834 0.99515 1.42501 0.91792 1.25813 0.95338 1.01874 0.95989 1.70107 0.98082 1.38580 1.49533 0.85613 0.77594 0.80323 0.78458 1.20468 1.21639 1.18497 1.22554 0.98881 0.90863 1.01870 1.23229 0.88019 0.99288 1.07252 0.90140 0.86982 0.85982 0.74340 0.93465 0.91749 0.93631 0.94890 0.93278 0.91800 0.89917 0.87344 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.49 71.24 0.75 0.31 16 2 C 0.11 1.59 7.45 46.92 0.35 1.94 16 3 N -0.34 -8.61 12.45 -40.56 -0.51 -9.11 16 4 O -0.22 -7.08 11.83 -20.28 -0.24 -7.32 16 5 C 0.02 0.47 4.25 30.45 0.13 0.60 16 6 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 7 C 0.52 15.17 7.13 87.66 0.63 15.79 16 8 O -0.58 -23.54 16.24 14.99 0.24 -23.30 16 9 N -0.69 -17.80 4.98 -439.09 -2.19 -19.99 16 10 C 0.15 5.10 3.25 45.72 0.15 5.25 16 11 H 0.07 2.56 7.57 -2.39 -0.02 2.54 16 12 C -0.13 -4.83 6.59 31.32 0.21 -4.63 16 13 C -0.09 -4.18 5.76 31.67 0.18 -4.00 16 14 C 0.04 1.85 2.73 -10.25 -0.03 1.82 16 15 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 16 C -0.53 -27.18 8.49 25.60 0.22 -26.96 16 17 H 0.06 3.13 7.77 -2.91 -0.02 3.11 16 18 C 0.01 0.45 5.36 84.66 0.45 0.90 16 19 N -0.92 -53.24 12.42 21.45 0.27 -52.97 16 20 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 C -0.10 -3.69 5.94 31.67 0.19 -3.50 16 25 C -0.14 -1.78 6.62 30.79 0.20 -1.58 16 26 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.11 0.18 8.14 -2.38 -0.02 0.17 16 28 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.42 7.46 8.36 -92.70 -0.78 6.68 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 32 H 0.04 2.05 8.04 -2.38 -0.02 2.03 16 33 H 0.03 1.69 7.64 -2.39 -0.02 1.67 16 34 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.60 7.63 -2.39 -0.02 2.59 16 37 H 0.11 1.49 7.90 -2.39 -0.02 1.47 16 38 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -76.50 319.11 3.31 -73.18 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.29 Total: 9.52 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 3.42 Total: -14.04 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.43 Total: -82.08 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: 0.00 Total: -30.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -76.50 3.31 -73.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854751913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.869 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds