Wall clock time and date at job start Mon Mar 30 2020 05:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47221 * 2 1 4 4 C 1.39873 * 125.89933 * 125.00156 * 3 2 1 5 5 C 1.35316 * 107.91987 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.12346 * 179.97438 * 5 4 3 7 7 C 1.50710 * 109.46965 * 85.00763 * 6 5 4 8 8 O 1.20821 * 119.99714 * 359.97438 * 7 6 5 9 9 O 1.34226 * 119.99914 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99690 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47191 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99993 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99652 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00007 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99436 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47095 * 120.00529 * 16 14 12 19 19 H 1.48501 * 109.46932 * 240.00183 * 16 14 12 20 20 N 1.34943 * 107.74531 * 0.02562 * 5 4 3 21 21 C 1.46500 * 126.03414 * 180.25880 * 20 5 4 22 22 N 1.30832 * 125.89900 * 304.97342 * 3 2 1 23 23 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47112 * 299.99963 * 1 2 3 25 25 H 1.08994 * 109.47046 * 59.99487 * 1 2 3 26 26 H 1.08998 * 109.47387 * 239.99588 * 2 1 3 27 27 H 1.09005 * 109.46916 * 119.99758 * 2 1 3 28 28 H 1.07997 * 126.03616 * 359.95235 * 4 3 2 29 29 H 1.09001 * 109.47071 * 204.99657 * 6 5 4 30 30 H 1.09003 * 109.47719 * 325.00496 * 6 5 4 31 31 H 1.08997 * 109.47328 * 299.99355 * 10 9 7 32 32 H 1.08997 * 109.47275 * 59.99720 * 10 9 7 33 33 H 1.09003 * 109.47254 * 300.00037 * 11 10 9 34 34 H 1.08998 * 109.47426 * 59.99811 * 11 10 9 35 35 H 0.97002 * 119.99184 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47763 * 269.71272 * 21 20 5 37 37 H 1.09004 * 109.47211 * 29.71722 * 21 20 5 38 38 H 1.09012 * 109.46942 * 149.71408 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9185 1.9774 0.9281 5 6 3.1221 3.2706 0.5856 6 6 4.0066 4.2526 1.3096 7 6 5.4250 4.1055 0.8219 8 8 5.6903 3.2868 -0.0262 9 8 6.3936 4.8832 1.3304 10 6 7.7363 4.6861 0.8141 11 6 8.6965 5.6551 1.5069 12 6 10.0902 5.4501 0.9714 13 1 10.2728 4.7036 0.2126 14 6 11.1320 6.2163 1.4497 15 7 10.9095 7.1256 2.3734 16 14 12.8594 5.9626 0.7855 17 1 12.8430 4.8878 -0.2390 18 1 13.3436 7.2246 0.1705 19 1 13.7648 5.5742 1.8966 20 7 2.3903 3.5234 -0.5196 21 6 2.3199 4.8012 -1.2328 22 7 1.7153 2.3466 -0.8684 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.3615 1.4655 1.7696 29 1 3.6589 5.2671 1.1146 30 1 3.9684 4.0550 2.3809 31 1 8.0527 3.6610 1.0064 32 1 7.7438 4.8733 -0.2597 33 1 8.3800 6.6802 1.3142 34 1 8.6891 5.4684 2.5807 35 1 11.6426 7.6643 2.7100 36 1 1.5073 5.4015 -0.8236 37 1 3.2622 5.3360 -1.1141 38 1 2.1377 4.6167 -2.2916 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923812854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:37 Heat of formation + Delta-G solvation = -31.200506 kcal Electronic energy + Delta-G solvation = -19401.833203 eV Core-core repulsion = 16245.662136 eV Total energy + Delta-G solvation = -3156.171068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47542 -39.87036 -36.24885 -34.95031 -33.40226 -32.40834 -31.86609 -30.32136 -27.95235 -26.74838 -24.99404 -23.62024 -21.80821 -20.80319 -20.26719 -19.05654 -17.53824 -16.83359 -16.28941 -16.17244 -15.81322 -15.23246 -14.60300 -14.51531 -14.46893 -13.98283 -13.64935 -13.36748 -12.88502 -12.65024 -12.58023 -12.38968 -12.30291 -12.03602 -11.58145 -11.34897 -11.26884 -11.08447 -10.80876 -10.72592 -10.53071 -10.31293 -9.70875 -9.69566 -9.33526 -9.15140 -8.54556 -8.48421 -6.14278 -4.18630 1.67641 2.38244 2.46619 2.66256 3.24554 3.25132 3.33237 3.38954 4.24359 4.35451 4.36626 4.68989 4.90122 4.94922 4.98921 5.13879 5.18364 5.20694 5.22589 5.30264 5.34653 5.61677 5.63479 5.71902 5.88600 6.02404 6.02879 6.04232 6.11296 6.58245 6.62347 6.86292 6.94712 7.51307 7.57229 7.66682 7.82503 8.11118 8.20767 8.87146 9.46120 10.97253 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.003050 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.544259 B = 9177.716042 C = 9400.486768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.074 3.926 4 C -0.250 4.250 5 C 0.099 3.901 6 C -0.055 4.055 7 C 0.455 3.545 8 O -0.505 6.505 9 O -0.356 6.356 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.366 5.366 21 C 0.098 3.902 22 N -0.290 5.290 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.025 -7.546 -2.249 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.279 4.279 5 C -0.028 4.028 6 C -0.094 4.094 7 C 0.296 3.704 8 O -0.393 6.393 9 O -0.272 6.272 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.148 5.148 21 C -0.043 4.043 22 N -0.113 5.113 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.133 0.867 30 H 0.150 0.850 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.487 -7.206 -3.528 22.002 hybrid contribution 1.649 -0.136 0.292 1.680 sum -18.839 -7.343 -3.236 20.476 Atomic orbital electron populations 1.21704 0.94537 1.01615 1.02413 1.19956 0.96115 0.88714 1.03272 1.22214 0.97131 0.96229 0.93564 1.21086 1.07520 0.93558 1.05732 1.20247 0.96175 0.96029 0.90381 1.19855 0.87663 0.99667 1.02214 1.23154 0.88166 0.79017 0.80056 1.90686 1.83688 1.34443 1.30507 1.86514 1.20112 1.57813 1.62788 1.23669 0.75572 1.01831 0.98558 1.19182 0.91461 0.93975 0.96660 1.21015 0.91879 1.20500 1.23072 0.92212 1.24985 0.99408 0.94881 0.94885 1.69980 1.32296 1.22190 1.28356 0.86415 0.83831 0.78166 0.78913 1.19585 1.20815 1.20779 1.48325 1.35550 1.09941 1.21029 1.21871 1.03330 0.80817 0.98289 1.77238 1.19961 0.91152 1.22920 0.92299 0.92707 0.92193 0.90298 0.89961 0.83556 0.86748 0.85043 0.92195 0.92356 0.95353 0.95274 0.92730 0.90542 0.89604 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.87 37.16 0.37 -0.83 16 2 C -0.04 -0.40 6.51 -27.88 -0.18 -0.58 16 3 C 0.07 0.97 6.49 -82.41 -0.53 0.44 16 4 C -0.25 -3.30 10.64 -40.01 -0.43 -3.73 16 5 C 0.10 1.31 5.43 -82.27 -0.45 0.86 16 6 C -0.05 -0.63 5.91 -29.03 -0.17 -0.80 16 7 C 0.45 7.55 7.95 36.01 0.29 7.84 16 8 O -0.50 -10.03 15.78 -18.75 -0.30 -10.33 16 9 O -0.36 -6.77 10.22 -39.25 -0.40 -7.17 16 10 C 0.08 1.66 5.40 37.16 0.20 1.86 16 11 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 12 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 N -0.37 -4.84 4.01 -63.88 -0.26 -5.10 16 21 C 0.10 0.91 11.07 59.85 0.66 1.58 16 22 N -0.29 -4.16 12.54 33.67 0.42 -3.74 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.11 1.01 7.50 -51.93 -0.39 0.62 16 30 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.74 7.54 -51.93 -0.39 0.35 16 38 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -33.91 332.71 -6.42 -40.33 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.82 Total: -3.61 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.80 Total: -6.27 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.90 Total: -34.19 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.70 Total: -17.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.91 -6.42 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923812854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.128 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds