Wall clock time and date at job start Mon Mar 30 2020 05:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47221 * 2 1 4 4 C 1.39873 * 125.89933 * 125.00156 * 3 2 1 5 5 C 1.35316 * 107.91987 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.12346 * 179.97438 * 5 4 3 7 7 C 1.50710 * 109.46965 * 85.00763 * 6 5 4 8 8 O 1.20821 * 119.99714 * 359.97438 * 7 6 5 9 9 O 1.34226 * 119.99914 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99690 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47191 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99993 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99652 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00007 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99436 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47095 * 120.00529 * 16 14 12 19 19 H 1.48501 * 109.46932 * 240.00183 * 16 14 12 20 20 N 1.34943 * 107.74531 * 0.02562 * 5 4 3 21 21 C 1.46500 * 126.03414 * 180.25880 * 20 5 4 22 22 N 1.30832 * 125.89900 * 304.97342 * 3 2 1 23 23 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47112 * 299.99963 * 1 2 3 25 25 H 1.08994 * 109.47046 * 59.99487 * 1 2 3 26 26 H 1.08998 * 109.47387 * 239.99588 * 2 1 3 27 27 H 1.09005 * 109.46916 * 119.99758 * 2 1 3 28 28 H 1.07997 * 126.03616 * 359.95235 * 4 3 2 29 29 H 1.09001 * 109.47071 * 204.99657 * 6 5 4 30 30 H 1.09003 * 109.47719 * 325.00496 * 6 5 4 31 31 H 1.08997 * 109.47328 * 299.99355 * 10 9 7 32 32 H 1.08997 * 109.47275 * 59.99720 * 10 9 7 33 33 H 1.09003 * 109.47254 * 300.00037 * 11 10 9 34 34 H 1.08998 * 109.47426 * 59.99811 * 11 10 9 35 35 H 0.97002 * 119.99184 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47763 * 269.71272 * 21 20 5 37 37 H 1.09004 * 109.47211 * 29.71722 * 21 20 5 38 38 H 1.09012 * 109.46942 * 149.71408 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9185 1.9774 0.9281 5 6 3.1221 3.2706 0.5856 6 6 4.0066 4.2526 1.3096 7 6 5.4250 4.1055 0.8219 8 8 5.6903 3.2868 -0.0262 9 8 6.3936 4.8832 1.3304 10 6 7.7363 4.6861 0.8141 11 6 8.6965 5.6551 1.5069 12 6 10.0902 5.4501 0.9714 13 1 10.2728 4.7036 0.2126 14 6 11.1320 6.2163 1.4497 15 7 10.9095 7.1256 2.3734 16 14 12.8594 5.9626 0.7855 17 1 12.8430 4.8878 -0.2390 18 1 13.3436 7.2246 0.1705 19 1 13.7648 5.5742 1.8966 20 7 2.3903 3.5234 -0.5196 21 6 2.3199 4.8012 -1.2328 22 7 1.7153 2.3466 -0.8684 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.3615 1.4655 1.7696 29 1 3.6589 5.2671 1.1146 30 1 3.9684 4.0550 2.3809 31 1 8.0527 3.6610 1.0064 32 1 7.7438 4.8733 -0.2597 33 1 8.3800 6.6802 1.3142 34 1 8.6891 5.4684 2.5807 35 1 11.6426 7.6643 2.7100 36 1 1.5073 5.4015 -0.8236 37 1 3.2622 5.3360 -1.1141 38 1 2.1377 4.6167 -2.2916 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923812854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:37 Heat of formation + Delta-G solvation = -51.517881 kcal Electronic energy + Delta-G solvation = -19402.714231 eV Core-core repulsion = 16245.662136 eV Total energy + Delta-G solvation = -3157.052095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.45774 -41.28611 -37.78311 -35.79731 -35.45981 -33.47018 -32.64656 -32.23856 -29.06076 -27.55920 -26.92073 -24.37946 -23.44126 -22.43419 -21.28659 -20.00423 -19.07289 -18.19908 -17.88406 -17.62223 -17.11427 -16.54673 -16.17945 -15.52774 -15.39148 -15.02385 -14.66354 -14.50072 -14.35412 -14.23199 -13.65065 -13.37058 -13.31819 -13.05222 -13.00954 -12.82161 -12.61056 -12.58365 -12.29728 -12.09972 -11.89929 -11.55567 -11.50104 -11.42962 -11.36498 -10.62392 -10.12974 -9.49595 -8.28229 -6.40944 0.66423 1.13206 1.40727 1.40842 1.50362 1.55002 1.66576 2.00785 2.40144 3.06477 3.28416 3.53578 3.79255 3.89944 4.12863 4.21371 4.23898 4.25538 4.35679 4.41636 4.44892 4.58855 4.60720 4.69041 4.74629 4.83568 5.02908 5.10150 5.25245 5.26048 5.36692 5.46787 5.52602 5.72725 5.74017 6.02230 6.06128 6.68454 6.71139 6.73815 7.28917 8.84438 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.003050 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.544259 B = 9177.716042 C = 9400.486768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C 0.064 3.936 4 C -0.268 4.268 5 C 0.087 3.913 6 C -0.042 4.042 7 C 0.457 3.543 8 O -0.539 6.539 9 O -0.359 6.359 10 C 0.092 3.908 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.062 0.938 14 C 0.007 3.993 15 N -0.925 5.925 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.275 1.275 20 N -0.374 5.374 21 C 0.089 3.911 22 N -0.319 5.319 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.163 0.837 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.268 0.732 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 -7.910 -2.221 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 C -0.101 4.101 4 C -0.297 4.297 5 C -0.041 4.041 6 C -0.080 4.080 7 C 0.301 3.699 8 O -0.429 6.429 9 O -0.276 6.276 10 C 0.019 3.981 11 C -0.006 4.006 12 C -0.588 4.588 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.564 5.564 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.200 1.200 20 N -0.156 5.156 21 C -0.051 4.051 22 N -0.142 5.142 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.177 0.823 29 H 0.165 0.835 30 H 0.181 0.819 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.838 -7.568 -3.506 22.445 hybrid contribution 1.666 -0.024 0.283 1.690 sum -19.171 -7.592 -3.223 20.870 Atomic orbital electron populations 1.21649 0.93600 1.02742 1.01605 1.20108 0.96908 0.87060 1.04136 1.22771 0.96883 0.97376 0.93113 1.21442 1.07819 0.93991 1.06422 1.20518 0.96401 0.96488 0.90651 1.19999 0.83411 1.01175 1.03448 1.24106 0.89180 0.77556 0.79041 1.90679 1.84288 1.35808 1.32150 1.86503 1.19354 1.58699 1.63030 1.23140 0.76776 1.00345 0.97845 1.18986 0.92137 0.93847 0.95680 1.21399 0.93184 1.20804 1.23406 0.91948 1.25926 1.03867 0.94384 0.94989 1.70088 1.33880 1.23009 1.29464 0.85305 0.78307 0.78413 0.78462 1.18820 1.20029 1.20007 1.48666 1.35264 1.10555 1.21147 1.22156 1.04680 0.79873 0.98436 1.77185 1.21177 0.91991 1.23893 0.90181 0.92880 0.93573 0.90236 0.88217 0.82321 0.83489 0.81938 0.92386 0.92440 0.97255 0.97263 0.92299 0.87944 0.89025 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.87 71.98 0.71 -1.41 16 2 C -0.04 -0.78 6.51 29.85 0.19 -0.58 16 3 C 0.06 1.62 6.49 43.10 0.28 1.90 16 4 C -0.27 -6.75 10.64 21.99 0.23 -6.52 16 5 C 0.09 2.17 5.43 41.41 0.22 2.39 16 6 C -0.04 -0.86 5.91 29.10 0.17 -0.69 16 7 C 0.46 14.58 7.95 71.24 0.57 15.15 16 8 O -0.54 -21.11 15.78 21.98 0.35 -20.76 16 9 O -0.36 -13.40 10.22 -51.38 -0.53 -13.93 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 C 0.03 1.61 5.35 29.85 0.16 1.77 16 12 C -0.55 -30.86 9.11 25.60 0.23 -30.63 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 14 C 0.01 0.42 5.46 84.66 0.46 0.88 16 15 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 16 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 N -0.37 -9.44 4.01 -356.02 -1.43 -10.86 16 21 C 0.09 1.51 11.07 127.77 1.41 2.93 16 22 N -0.32 -9.00 12.54 -47.39 -0.59 -9.59 16 23 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.41 8.12 -2.38 -0.02 1.39 16 28 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 29 H 0.15 2.09 7.50 -2.39 -0.02 2.07 16 30 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 32 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.43 7.54 -2.39 -0.02 1.41 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -73.27 332.71 6.18 -67.08 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.04 Total: 7.47 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.04 Total: -10.38 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.74 Total: -74.75 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.18 Total: -34.69 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -73.27 6.18 -67.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923812854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.563 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds