Wall clock time and date at job start Mon Mar 30 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 110.53316 * 2 1 4 4 N 1.47307 * 110.60344 * 237.00308 * 2 1 3 5 5 C 1.34531 * 106.61813 * 241.24914 * 4 2 1 6 6 O 1.21537 * 123.77044 * 180.20590 * 5 4 2 7 7 N 1.33794 * 112.45756 * 0.38391 * 5 4 2 8 8 C 1.46500 * 124.17662 * 179.86208 * 7 5 4 9 9 H 1.09002 * 110.01745 * 352.28942 * 8 7 5 10 10 C 1.54268 * 110.02879 * 113.67849 * 8 7 5 11 11 C 1.54888 * 104.31061 * 95.65833 * 10 8 7 12 12 C 1.55237 * 102.58934 * 37.92932 * 11 10 8 13 13 H 1.08994 * 110.46846 * 80.77719 * 12 11 10 14 14 C 1.50700 * 110.57860 * 203.33731 * 12 11 10 15 15 H 1.07999 * 119.99973 * 114.87628 * 14 12 11 16 16 C 1.37874 * 120.00457 * 294.87373 * 14 12 11 17 17 N 1.31517 * 119.99681 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00347 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46867 * 120.00297 * 18 16 14 21 21 H 1.48497 * 109.47358 * 239.99807 * 18 16 14 22 22 C 1.53870 * 110.07090 * 230.86654 * 8 7 5 23 23 C 1.34770 * 111.64147 * 359.59211 * 7 5 4 24 24 O 1.21234 * 127.15377 * 180.19515 * 23 7 5 25 25 H 1.08998 * 109.47296 * 297.17445 * 1 2 3 26 26 H 1.09003 * 109.46853 * 57.17710 * 1 2 3 27 27 H 1.09001 * 109.46802 * 177.17032 * 1 2 3 28 28 H 1.09000 * 109.46813 * 182.82705 * 3 2 1 29 29 H 1.08997 * 109.47086 * 302.82455 * 3 2 1 30 30 H 1.08998 * 109.47220 * 62.82947 * 3 2 1 31 31 H 0.96997 * 126.69357 * 61.50696 * 4 2 1 32 32 H 1.09002 * 110.48184 * 214.40178 * 10 8 7 33 33 H 1.08993 * 110.48866 * 336.91166 * 10 8 7 34 34 H 1.09007 * 110.75670 * 156.31953 * 11 10 8 35 35 H 1.09003 * 110.75678 * 279.69108 * 11 10 8 36 36 H 0.96999 * 119.99819 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.03610 * 359.97438 * 22 8 7 38 38 H 1.09004 * 110.02906 * 121.36260 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4329 0.0000 4 7 2.0484 -0.7509 -1.1564 5 6 2.7642 -1.7761 -0.6600 6 8 3.3372 -2.5965 -1.3497 7 7 2.7716 -1.7938 0.6778 8 6 3.4688 -2.7991 1.4837 9 1 3.8547 -3.5904 0.8410 10 6 4.6253 -2.1412 2.2644 11 6 4.0218 -1.8363 3.6579 12 6 3.1196 -3.0734 3.9140 13 1 3.7162 -3.9128 4.2709 14 6 2.0336 -2.7410 4.9045 15 1 0.9990 -2.7510 4.5950 16 6 2.3607 -2.4243 6.2059 17 7 3.6206 -2.4127 6.5830 18 14 1.0145 -2.0117 7.4335 19 1 -0.3084 -2.0958 6.7643 20 1 1.0605 -2.9767 8.5614 21 1 1.2215 -0.6353 7.9511 22 6 2.5115 -3.3917 2.5326 23 6 2.0633 -0.7691 1.1923 24 8 1.8885 -0.5158 2.3650 25 1 -0.3634 0.4693 0.9142 26 1 -0.3633 0.5571 -0.8636 27 1 -0.3633 -1.0264 -0.0507 28 1 3.1553 1.4130 -0.0507 29 1 1.6724 1.9685 -0.8636 30 1 1.7546 1.9377 0.9142 31 1 1.9050 -0.5442 -2.0932 32 1 5.4650 -2.8302 2.3548 33 1 4.9402 -1.2196 1.7751 34 1 4.8063 -1.7645 4.4114 35 1 3.4269 -0.9233 3.6299 36 1 3.8508 -2.1896 7.4985 37 1 1.5276 -2.9311 2.4427 38 1 2.4322 -4.4705 2.3984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927722051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:28 Heat of formation + Delta-G solvation = -50.678531 kcal Electronic energy + Delta-G solvation = -21665.953293 eV Core-core repulsion = 18508.937595 eV Total energy + Delta-G solvation = -3157.015698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.32337 -38.34168 -37.48458 -36.03326 -34.14416 -32.16100 -31.18921 -28.23596 -27.67326 -27.42436 -24.48138 -23.59876 -22.11531 -20.75634 -19.22246 -18.92571 -17.39436 -16.63263 -16.38635 -15.90274 -15.40202 -14.97858 -14.57323 -14.41532 -13.98823 -13.90704 -13.51344 -12.99880 -12.62729 -12.46677 -12.35012 -12.19855 -11.73766 -11.69375 -11.22866 -10.94426 -10.88576 -10.55969 -10.44982 -10.17061 -9.99283 -9.72274 -9.54391 -9.43782 -9.18962 -8.93457 -8.61895 -8.23430 -5.89190 -3.88654 1.99333 2.50341 3.28391 3.30018 3.36966 3.44466 3.48986 4.07341 4.49608 4.54739 4.69298 5.28716 5.31899 5.38339 5.40194 5.46580 5.49500 5.58402 5.62668 5.79486 5.85779 5.89460 5.92921 6.30626 6.48519 6.57914 6.69006 6.78135 6.85866 7.00738 7.33513 7.41520 7.42603 7.77702 7.86658 8.03966 8.15210 8.37595 8.58095 9.11167 9.73169 11.21111 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.006796 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.147073 B = 4118.949238 C = 4718.681820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.113 3.887 3 C -0.145 4.145 4 N -0.728 5.728 5 C 0.702 3.298 6 O -0.556 6.556 7 N -0.566 5.566 8 C 0.141 3.859 9 H 0.094 0.906 10 C -0.138 4.138 11 C -0.105 4.105 12 C 0.055 3.945 13 H 0.030 0.970 14 C -0.493 4.493 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.887 3.113 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.286 1.286 22 C -0.122 4.122 23 C 0.514 3.486 24 O -0.414 6.414 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.432 0.568 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.257 0.743 37 H 0.063 0.937 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 6.776 -14.594 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.022 3.978 3 C -0.203 4.203 4 N -0.392 5.392 5 C 0.403 3.597 6 O -0.432 6.432 7 N -0.312 5.312 8 C 0.041 3.959 9 H 0.112 0.888 10 C -0.176 4.176 11 C -0.143 4.143 12 C 0.037 3.963 13 H 0.048 0.952 14 C -0.532 4.532 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.160 4.160 23 C 0.298 3.702 24 O -0.279 6.279 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.276 0.724 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.274 6.426 -14.026 15.771 hybrid contribution -0.705 0.355 0.173 0.807 sum -3.978 6.780 -13.853 15.928 Atomic orbital electron populations 1.21970 0.90650 1.03659 1.04043 1.21534 0.96964 0.94219 0.85063 1.21968 1.01975 0.92291 1.04064 1.45681 1.55330 1.29448 1.08754 1.15974 0.79470 0.82003 0.82267 1.90958 1.49014 1.41764 1.61427 1.46684 1.49003 1.28631 1.06911 1.22229 0.93455 0.88271 0.91981 0.88764 1.22874 0.96336 0.99133 0.99297 1.22714 0.99154 1.01271 0.91170 1.19440 0.94176 0.93746 0.88949 0.95186 1.21091 0.92545 1.45514 0.94019 0.92921 1.24932 0.95134 0.95712 0.98237 1.69968 1.16112 1.49696 1.17525 0.86615 0.82570 0.77863 0.81395 1.19937 1.21309 1.21197 1.22654 0.98291 0.98525 0.96573 1.20659 0.78673 0.80886 0.89938 1.90948 1.53925 1.67577 1.15444 0.89701 0.90805 0.91453 0.91534 0.90784 0.89713 0.72424 0.91203 0.93314 0.91783 0.91025 0.93368 0.91885 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.98 37.16 0.33 -1.04 16 2 C 0.11 1.30 1.37 -132.09 -0.18 1.12 16 3 C -0.14 -1.34 8.99 37.16 0.33 -1.00 16 4 N -0.73 -8.24 5.91 -52.94 -0.31 -8.56 16 5 C 0.70 11.16 8.63 -88.01 -0.76 10.40 16 6 O -0.56 -10.41 17.27 5.33 0.09 -10.32 16 7 N -0.57 -9.75 2.47 -112.39 -0.28 -10.03 16 8 C 0.14 2.68 3.50 -66.81 -0.23 2.44 16 9 H 0.09 1.71 7.52 -51.93 -0.39 1.32 16 10 C -0.14 -2.70 6.29 -25.07 -0.16 -2.86 16 11 C -0.11 -2.50 5.22 -24.55 -0.13 -2.63 16 12 C 0.06 1.40 2.72 -89.93 -0.24 1.15 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.49 -13.80 8.47 -34.44 -0.29 -14.10 16 15 H 0.05 1.49 7.54 -52.49 -0.40 1.09 16 16 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 17 N -0.89 -26.16 12.30 55.43 0.68 -25.48 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C -0.12 -2.60 5.51 -25.62 -0.14 -2.74 16 23 C 0.51 8.57 6.00 -10.55 -0.06 8.50 16 24 O -0.41 -8.44 13.71 5.60 0.08 -8.36 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.43 3.56 8.96 -40.82 -0.37 3.19 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.06 1.65 7.57 -51.92 -0.39 1.26 16 35 H 0.07 1.81 5.47 -51.93 -0.28 1.53 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 1.40 6.29 -51.93 -0.33 1.07 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -32.51 306.54 -7.28 -39.79 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.51 Total: 0.54 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.63 Total: 0.87 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.09 Total: -44.07 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.17 Total: -18.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.51 -7.28 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927722051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.887 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds