Wall clock time and date at job start Mon Mar 30 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 110.53316 * 2 1 4 4 N 1.47307 * 110.60344 * 237.00308 * 2 1 3 5 5 C 1.34531 * 106.61813 * 241.24914 * 4 2 1 6 6 O 1.21537 * 123.77044 * 180.20590 * 5 4 2 7 7 N 1.33794 * 112.45756 * 0.38391 * 5 4 2 8 8 C 1.46500 * 124.17662 * 179.86208 * 7 5 4 9 9 H 1.09002 * 110.01745 * 352.28942 * 8 7 5 10 10 C 1.54268 * 110.02879 * 113.67849 * 8 7 5 11 11 C 1.54888 * 104.31061 * 95.65833 * 10 8 7 12 12 C 1.55237 * 102.58934 * 37.92932 * 11 10 8 13 13 H 1.08994 * 110.46846 * 80.77719 * 12 11 10 14 14 C 1.50700 * 110.57860 * 203.33731 * 12 11 10 15 15 H 1.07999 * 119.99973 * 114.87628 * 14 12 11 16 16 C 1.37874 * 120.00457 * 294.87373 * 14 12 11 17 17 N 1.31517 * 119.99681 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00347 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46867 * 120.00297 * 18 16 14 21 21 H 1.48497 * 109.47358 * 239.99807 * 18 16 14 22 22 C 1.53870 * 110.07090 * 230.86654 * 8 7 5 23 23 C 1.34770 * 111.64147 * 359.59211 * 7 5 4 24 24 O 1.21234 * 127.15377 * 180.19515 * 23 7 5 25 25 H 1.08998 * 109.47296 * 297.17445 * 1 2 3 26 26 H 1.09003 * 109.46853 * 57.17710 * 1 2 3 27 27 H 1.09001 * 109.46802 * 177.17032 * 1 2 3 28 28 H 1.09000 * 109.46813 * 182.82705 * 3 2 1 29 29 H 1.08997 * 109.47086 * 302.82455 * 3 2 1 30 30 H 1.08998 * 109.47220 * 62.82947 * 3 2 1 31 31 H 0.96997 * 126.69357 * 61.50696 * 4 2 1 32 32 H 1.09002 * 110.48184 * 214.40178 * 10 8 7 33 33 H 1.08993 * 110.48866 * 336.91166 * 10 8 7 34 34 H 1.09007 * 110.75670 * 156.31953 * 11 10 8 35 35 H 1.09003 * 110.75678 * 279.69108 * 11 10 8 36 36 H 0.96999 * 119.99819 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.03610 * 359.97438 * 22 8 7 38 38 H 1.09004 * 110.02906 * 121.36260 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4329 0.0000 4 7 2.0484 -0.7509 -1.1564 5 6 2.7642 -1.7761 -0.6600 6 8 3.3372 -2.5965 -1.3497 7 7 2.7716 -1.7938 0.6778 8 6 3.4688 -2.7991 1.4837 9 1 3.8547 -3.5904 0.8410 10 6 4.6253 -2.1412 2.2644 11 6 4.0218 -1.8363 3.6579 12 6 3.1196 -3.0734 3.9140 13 1 3.7162 -3.9128 4.2709 14 6 2.0336 -2.7410 4.9045 15 1 0.9990 -2.7510 4.5950 16 6 2.3607 -2.4243 6.2059 17 7 3.6206 -2.4127 6.5830 18 14 1.0145 -2.0117 7.4335 19 1 -0.3084 -2.0958 6.7643 20 1 1.0605 -2.9767 8.5614 21 1 1.2215 -0.6353 7.9511 22 6 2.5115 -3.3917 2.5326 23 6 2.0633 -0.7691 1.1923 24 8 1.8885 -0.5158 2.3650 25 1 -0.3634 0.4693 0.9142 26 1 -0.3633 0.5571 -0.8636 27 1 -0.3633 -1.0264 -0.0507 28 1 3.1553 1.4130 -0.0507 29 1 1.6724 1.9685 -0.8636 30 1 1.7546 1.9377 0.9142 31 1 1.9050 -0.5442 -2.0932 32 1 5.4650 -2.8302 2.3548 33 1 4.9402 -1.2196 1.7751 34 1 4.8063 -1.7645 4.4114 35 1 3.4269 -0.9233 3.6299 36 1 3.8508 -2.1896 7.4985 37 1 1.5276 -2.9311 2.4427 38 1 2.4322 -4.4705 2.3984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927722051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:28 Heat of formation + Delta-G solvation = -72.810964 kcal Electronic energy + Delta-G solvation = -21666.913027 eV Core-core repulsion = 18508.937595 eV Total energy + Delta-G solvation = -3157.975432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.56862 -39.72844 -38.98944 -37.38391 -35.67204 -34.07958 -32.26178 -30.10193 -29.15715 -28.40206 -26.23733 -25.10944 -23.43541 -21.93883 -21.15189 -20.37901 -18.66024 -18.48972 -17.71263 -17.34643 -16.58595 -16.55893 -16.39362 -15.82057 -15.42110 -15.26494 -14.90645 -14.47273 -13.92869 -13.65264 -13.50142 -13.22924 -13.09708 -12.97666 -12.87155 -12.73894 -12.52083 -12.36668 -12.28657 -11.81343 -11.62968 -11.49185 -11.17094 -10.98751 -10.72321 -10.60582 -10.44416 -10.29219 -8.07441 -6.13245 0.73477 1.28692 1.38924 1.40422 1.51838 2.01478 2.22159 2.46155 2.96413 3.23662 3.57987 3.81369 3.83362 3.89664 4.04484 4.36287 4.43132 4.62189 4.64241 4.68973 4.76767 4.79708 4.85549 4.90136 5.03403 5.05216 5.12180 5.15458 5.21259 5.37797 5.52284 5.67748 5.86103 5.94916 6.03345 6.17675 6.43591 6.64717 6.92972 7.17729 7.51274 9.02284 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.006796 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.147073 B = 4118.949238 C = 4718.681820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.125 3.875 3 C -0.141 4.141 4 N -0.699 5.699 5 C 0.700 3.300 6 O -0.585 6.585 7 N -0.575 5.575 8 C 0.148 3.852 9 H 0.108 0.892 10 C -0.126 4.126 11 C -0.095 4.095 12 C 0.048 3.952 13 H 0.003 0.997 14 C -0.507 4.507 15 H 0.043 0.957 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.948 3.052 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.282 1.282 22 C -0.111 4.111 23 C 0.503 3.497 24 O -0.461 6.461 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.451 0.549 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.054 0.946 36 H 0.258 0.742 37 H 0.050 0.950 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 8.033 -16.652 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 C -0.199 4.199 4 N -0.364 5.364 5 C 0.401 3.599 6 O -0.463 6.463 7 N -0.320 5.320 8 C 0.046 3.954 9 H 0.126 0.874 10 C -0.165 4.165 11 C -0.133 4.133 12 C 0.030 3.970 13 H 0.022 0.978 14 C -0.545 4.545 15 H 0.061 0.939 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.208 1.208 22 C -0.150 4.150 23 C 0.290 3.710 24 O -0.329 6.329 25 H 0.099 0.901 26 H 0.133 0.867 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.299 0.701 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.466 7.713 -16.136 18.434 hybrid contribution -0.352 -0.038 0.807 0.881 sum -4.819 7.675 -15.329 17.808 Atomic orbital electron populations 1.22019 0.88500 1.03724 1.05747 1.21619 0.98253 0.94456 0.82166 1.22017 1.01582 0.90534 1.05777 1.45532 1.53516 1.27661 1.09723 1.16019 0.79758 0.82615 0.81498 1.90944 1.50476 1.43145 1.61735 1.46730 1.49098 1.28538 1.07669 1.21955 0.92559 0.89115 0.91785 0.87450 1.22750 0.96870 1.00159 0.96671 1.22429 0.97901 0.99929 0.93026 1.19392 0.93743 0.93309 0.90600 0.97844 1.21362 0.92759 1.45371 0.95041 0.93872 1.25676 0.97251 0.95765 1.00055 1.70086 1.17732 1.50486 1.17908 0.85656 0.80033 0.77702 0.79176 1.19440 1.20515 1.20843 1.22446 0.97909 0.99391 0.95222 1.21605 0.77823 0.80788 0.90811 1.90923 1.55525 1.68681 1.17738 0.90123 0.86718 0.92521 0.92322 0.86774 0.90049 0.70115 0.89824 0.92036 0.94691 0.92720 0.93319 0.93091 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.98 71.98 0.65 -1.59 16 2 C 0.13 2.54 1.37 2.99 0.00 2.54 16 3 C -0.14 -2.13 8.99 71.98 0.65 -1.48 16 4 N -0.70 -13.58 5.91 -439.81 -2.60 -16.18 16 5 C 0.70 20.87 8.63 179.44 1.55 22.41 16 6 O -0.59 -20.85 17.27 -3.83 -0.07 -20.92 16 7 N -0.57 -19.23 2.47 -746.75 -1.85 -21.07 16 8 C 0.15 5.53 3.50 45.71 0.16 5.69 16 9 H 0.11 3.78 7.52 -2.39 -0.02 3.76 16 10 C -0.13 -4.93 6.29 31.67 0.20 -4.73 16 11 C -0.09 -4.67 5.22 32.01 0.17 -4.50 16 12 C 0.05 2.51 2.72 -10.35 -0.03 2.48 16 13 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 14 C -0.51 -29.23 8.47 25.60 0.22 -29.02 16 15 H 0.04 2.51 7.54 -2.91 -0.02 2.48 16 16 C 0.01 0.60 5.35 84.65 0.45 1.05 16 17 N -0.92 -55.50 12.30 21.45 0.26 -55.24 16 18 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 C -0.11 -4.81 5.51 31.31 0.17 -4.64 16 23 C 0.50 16.38 6.00 87.94 0.53 16.91 16 24 O -0.46 -19.07 13.71 -2.89 -0.04 -19.11 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.45 5.52 8.96 -92.71 -0.83 4.69 16 32 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 34 H 0.03 1.87 7.57 -2.38 -0.02 1.86 16 35 H 0.05 2.88 5.47 -2.39 -0.01 2.86 16 36 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.05 2.31 6.29 -2.39 -0.02 2.29 16 38 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -72.98 306.54 2.69 -70.28 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.24 Total: 9.33 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.71 Total: 5.13 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -4.18 Total: -92.49 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.11 Total: -40.03 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -72.98 2.69 -70.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927722051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.527 kcal (2) G-P(sol) polarization free energy of solvation -72.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds