Wall clock time and date at job start Mon Mar 30 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.54252 * 123.84019 * 3 2 1 5 5 C 1.50704 * 109.47104 * 300.00372 * 4 3 2 6 6 O 1.21275 * 120.00316 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99694 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99650 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46737 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46966 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99894 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00010 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00213 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99801 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47316 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47119 * 120.00060 * 14 12 10 17 17 H 1.48493 * 109.47123 * 240.00082 * 14 12 10 18 18 C 1.53174 * 109.54556 * 3.66705 * 3 2 1 19 19 C 1.53290 * 109.06075 * 297.02715 * 18 3 2 20 20 O 1.42901 * 109.46203 * 302.44341 * 19 18 3 21 21 C 1.42903 * 114.09356 * 61.15883 * 20 19 18 22 22 C 1.53091 * 109.41633 * 298.84001 * 21 20 19 23 23 H 1.09004 * 109.47122 * 59.99813 * 4 3 2 24 24 H 1.08994 * 109.47461 * 179.97438 * 4 3 2 25 25 H 0.96997 * 119.99974 * 0.02562 * 7 5 4 26 26 H 1.09000 * 109.47468 * 300.00024 * 8 7 5 27 27 H 1.09004 * 109.47181 * 60.00604 * 8 7 5 28 28 H 1.09004 * 109.47448 * 299.99951 * 9 8 7 29 29 H 1.09004 * 109.47466 * 60.00279 * 9 8 7 30 30 H 0.96999 * 120.00156 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.52621 * 57.01539 * 18 3 2 32 32 H 1.08991 * 109.52723 * 177.20597 * 18 3 2 33 33 H 1.09002 * 109.45261 * 182.44496 * 19 18 3 34 34 H 1.09003 * 109.46577 * 62.44930 * 19 18 3 35 35 H 1.09000 * 109.47917 * 178.85973 * 21 20 19 36 36 H 1.09000 * 109.49157 * 58.82974 * 21 20 19 37 37 H 1.08994 * 109.52621 * 297.70472 * 22 21 20 38 38 H 1.09002 * 109.57258 * 177.54376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1194 0.8038 -1.1976 5 6 2.6182 0.1776 -2.4734 6 8 1.9210 -0.8138 -2.4292 7 7 2.9447 0.7193 -3.6636 8 6 2.4579 0.1102 -4.9038 9 6 2.9693 0.9135 -6.1014 10 6 2.4680 0.2873 -7.3772 11 1 1.8465 -0.5951 -7.3378 12 6 2.8020 0.8415 -8.5947 13 7 3.5575 1.9168 -8.6427 14 14 2.1812 0.0649 -10.1762 15 1 1.3560 -1.1264 -9.8520 16 1 1.3564 1.0499 -10.9209 17 1 3.3371 -0.3460 -11.0129 18 6 3.1211 -1.4396 -0.0923 19 6 2.6685 -2.2130 1.1514 20 8 3.1524 -1.5545 2.3237 21 6 2.6676 -0.2200 2.4854 22 6 3.1201 0.6332 1.2976 23 1 2.7562 1.8293 -1.1292 24 1 4.2093 0.8040 -1.1963 25 1 3.5026 1.5119 -3.6989 26 1 2.8218 -0.9150 -4.9724 27 1 1.3679 0.1097 -4.9050 28 1 2.6058 1.9388 -6.0331 29 1 4.0593 0.9136 -6.1001 30 1 3.7928 2.3065 -9.4993 31 1 2.7161 -1.9141 -0.9862 32 1 4.2098 -1.4360 -0.1423 33 1 3.0668 -3.2269 1.1133 34 1 1.5794 -2.2511 1.1791 35 1 3.0652 0.2018 3.4084 36 1 1.5786 -0.2316 2.5306 37 1 4.2089 0.6788 1.2757 38 1 2.7153 1.6405 1.3963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118754553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:50 Heat of formation + Delta-G solvation = -74.954875 kcal Electronic energy + Delta-G solvation = -19998.102350 eV Core-core repulsion = 16840.033951 eV Total energy + Delta-G solvation = -3158.068399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70812 -38.95807 -36.53580 -35.04144 -34.44125 -32.92007 -31.43340 -30.34814 -28.77278 -25.25212 -24.00466 -23.84784 -22.00634 -21.06905 -20.21490 -17.41774 -16.80607 -16.44978 -16.28050 -16.08658 -15.51881 -15.04133 -14.82418 -14.66230 -14.36510 -13.90074 -13.83115 -13.37886 -13.00094 -12.55281 -12.39644 -12.32771 -12.17999 -11.97939 -11.83088 -11.59482 -11.24965 -11.09639 -10.95206 -10.66988 -10.65850 -10.37904 -9.92818 -9.76385 -9.46807 -9.19104 -8.61302 -8.41695 -6.13586 -4.16448 2.75473 2.81647 2.85669 3.25774 3.33376 3.37724 3.48290 3.59776 3.74948 4.34840 4.36185 4.44237 4.46052 4.65151 4.90717 5.03812 5.09253 5.15964 5.23782 5.25105 5.33172 5.41731 5.47227 5.54650 5.68793 5.80042 6.05175 6.26580 6.28227 6.67503 6.82141 6.91977 7.45876 7.55774 7.60698 7.84065 7.89427 8.22430 8.52157 8.89680 9.48822 10.98001 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044350 B = 0.003339 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.189034 B = 8383.946533 C = 8475.872161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.222 3.778 3 C 0.057 3.943 4 C -0.135 4.135 5 C 0.501 3.499 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.121 3.879 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.156 4.156 19 C 0.058 3.942 20 O -0.380 6.380 21 C 0.058 3.942 22 C -0.145 4.145 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.399 0.601 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -1.133 20.734 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.096 4.096 3 C 0.053 3.947 4 C -0.177 4.177 5 C 0.286 3.714 6 O -0.422 6.422 7 N -0.368 5.368 8 C -0.001 4.001 9 C -0.025 4.025 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.194 4.194 19 C -0.019 4.019 20 O -0.299 6.299 21 C -0.019 4.019 22 C -0.183 4.183 23 H 0.120 0.880 24 H 0.133 0.867 25 H 0.232 0.768 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.052 -1.814 20.734 20.914 hybrid contribution 0.212 0.328 -1.359 1.414 sum 2.265 -1.486 19.375 19.563 Atomic orbital electron populations 1.81155 1.12678 1.07933 1.08603 1.28630 0.94571 0.93522 0.92907 1.18033 0.82344 0.98339 0.95968 1.21838 1.03710 1.00720 0.91389 1.20431 0.80967 0.84681 0.85320 1.90638 1.38358 1.26013 1.87163 1.46331 1.52511 1.31439 1.06523 1.21741 0.98562 0.97521 0.82271 1.19330 0.96947 0.95474 0.90772 1.21085 1.31933 1.12565 0.90486 0.92225 1.24995 0.94979 0.94912 0.99385 1.69956 1.36686 1.20973 1.25651 0.86461 0.78687 0.79389 0.83070 1.19579 1.20919 1.20881 1.22626 1.02504 0.92870 1.01411 1.22694 0.98480 0.96580 0.84099 1.87937 1.71616 1.26662 1.43652 1.22596 0.98479 0.82862 0.97995 1.22339 1.03221 0.99992 0.92785 0.87985 0.86739 0.76758 0.92418 0.92619 0.95972 0.95870 0.92864 0.86775 0.89325 0.88095 0.93336 0.88113 0.93360 0.88502 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.11 18.54 42.15 0.78 -6.33 16 2 C 0.22 3.04 9.91 -20.76 -0.21 2.83 16 3 C 0.06 0.56 0.49 -157.11 -0.08 0.48 16 4 C -0.14 -1.25 4.75 -27.88 -0.13 -1.38 16 5 C 0.50 7.34 7.27 -10.98 -0.08 7.26 16 6 O -0.54 -9.90 12.52 5.56 0.07 -9.83 16 7 N -0.72 -11.34 5.56 -60.29 -0.33 -11.68 16 8 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 14 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.16 -1.57 4.58 -26.49 -0.12 -1.69 16 19 C 0.06 0.57 6.62 37.31 0.25 0.82 16 20 O -0.38 -3.78 10.77 -35.23 -0.38 -4.16 16 21 C 0.06 0.45 6.61 37.20 0.25 0.70 16 22 C -0.14 -0.97 4.90 -26.59 -0.13 -1.10 16 23 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.40 5.26 8.47 -40.82 -0.35 4.91 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.11 1.47 5.62 -51.93 -0.29 1.18 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.54 7.38 -51.93 -0.38 0.16 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.44 7.38 -51.93 -0.38 0.05 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -33.43 316.38 -5.81 -39.24 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.60 Total: -0.63 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.83 Total: -2.55 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 1.18 Total: -43.03 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.31 Total: -13.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.43 -5.81 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118754553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.720 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds