Wall clock time and date at job start Mon Mar 30 2020 04:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.54252 * 123.84019 * 3 2 1 5 5 C 1.50704 * 109.47104 * 300.00372 * 4 3 2 6 6 O 1.21275 * 120.00316 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99694 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99650 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46737 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46966 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99894 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00010 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00213 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99801 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47316 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47119 * 120.00060 * 14 12 10 17 17 H 1.48493 * 109.47123 * 240.00082 * 14 12 10 18 18 C 1.53174 * 109.54556 * 3.66705 * 3 2 1 19 19 C 1.53290 * 109.06075 * 297.02715 * 18 3 2 20 20 O 1.42901 * 109.46203 * 302.44341 * 19 18 3 21 21 C 1.42903 * 114.09356 * 61.15883 * 20 19 18 22 22 C 1.53091 * 109.41633 * 298.84001 * 21 20 19 23 23 H 1.09004 * 109.47122 * 59.99813 * 4 3 2 24 24 H 1.08994 * 109.47461 * 179.97438 * 4 3 2 25 25 H 0.96997 * 119.99974 * 0.02562 * 7 5 4 26 26 H 1.09000 * 109.47468 * 300.00024 * 8 7 5 27 27 H 1.09004 * 109.47181 * 60.00604 * 8 7 5 28 28 H 1.09004 * 109.47448 * 299.99951 * 9 8 7 29 29 H 1.09004 * 109.47466 * 60.00279 * 9 8 7 30 30 H 0.96999 * 120.00156 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.52621 * 57.01539 * 18 3 2 32 32 H 1.08991 * 109.52723 * 177.20597 * 18 3 2 33 33 H 1.09002 * 109.45261 * 182.44496 * 19 18 3 34 34 H 1.09003 * 109.46577 * 62.44930 * 19 18 3 35 35 H 1.09000 * 109.47917 * 178.85973 * 21 20 19 36 36 H 1.09000 * 109.49157 * 58.82974 * 21 20 19 37 37 H 1.08994 * 109.52621 * 297.70472 * 22 21 20 38 38 H 1.09002 * 109.57258 * 177.54376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1194 0.8038 -1.1976 5 6 2.6182 0.1776 -2.4734 6 8 1.9210 -0.8138 -2.4292 7 7 2.9447 0.7193 -3.6636 8 6 2.4579 0.1102 -4.9038 9 6 2.9693 0.9135 -6.1014 10 6 2.4680 0.2873 -7.3772 11 1 1.8465 -0.5951 -7.3378 12 6 2.8020 0.8415 -8.5947 13 7 3.5575 1.9168 -8.6427 14 14 2.1812 0.0649 -10.1762 15 1 1.3560 -1.1264 -9.8520 16 1 1.3564 1.0499 -10.9209 17 1 3.3371 -0.3460 -11.0129 18 6 3.1211 -1.4396 -0.0923 19 6 2.6685 -2.2130 1.1514 20 8 3.1524 -1.5545 2.3237 21 6 2.6676 -0.2200 2.4854 22 6 3.1201 0.6332 1.2976 23 1 2.7562 1.8293 -1.1292 24 1 4.2093 0.8040 -1.1963 25 1 3.5026 1.5119 -3.6989 26 1 2.8218 -0.9150 -4.9724 27 1 1.3679 0.1097 -4.9050 28 1 2.6058 1.9388 -6.0331 29 1 4.0593 0.9136 -6.1001 30 1 3.7928 2.3065 -9.4993 31 1 2.7161 -1.9141 -0.9862 32 1 4.2098 -1.4360 -0.1423 33 1 3.0668 -3.2269 1.1133 34 1 1.5794 -2.2511 1.1791 35 1 3.0652 0.2018 3.4084 36 1 1.5786 -0.2316 2.5306 37 1 4.2089 0.6788 1.2757 38 1 2.7153 1.6405 1.3963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118754553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:49 Heat of formation + Delta-G solvation = -99.317917 kcal Electronic energy + Delta-G solvation = -19999.158811 eV Core-core repulsion = 16840.033951 eV Total energy + Delta-G solvation = -3159.124860 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61914 -40.01165 -37.55971 -36.58144 -35.41461 -34.82141 -32.09985 -31.88806 -29.90770 -26.85977 -25.08527 -24.62817 -22.89725 -22.74928 -21.43288 -18.61986 -18.28537 -17.64147 -17.19464 -16.93971 -16.68360 -16.48441 -16.14480 -15.68570 -15.56249 -15.11096 -14.79901 -14.65668 -14.34095 -14.10054 -13.46970 -13.24926 -13.12069 -13.07068 -12.97721 -12.81892 -12.69586 -12.52638 -12.31457 -12.17158 -11.74731 -11.63020 -11.42746 -11.36661 -10.75949 -10.61592 -10.40970 -9.95528 -8.25628 -6.35496 1.39110 1.40755 1.53156 1.68409 1.74318 1.81081 2.26816 2.44987 2.84400 2.95974 3.09247 3.53824 3.64553 3.74490 3.99477 4.07100 4.24453 4.44523 4.46360 4.48503 4.55193 4.64781 4.74628 4.78025 4.82875 4.86527 4.91323 5.08827 5.17706 5.20606 5.36047 5.52655 5.59127 5.79186 6.16285 6.22493 6.58582 6.67482 6.78003 7.33837 7.34849 8.86146 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044350 B = 0.003339 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.189034 B = 8383.946533 C = 8475.872161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.240 3.760 3 C 0.053 3.947 4 C -0.124 4.124 5 C 0.495 3.505 6 O -0.582 6.582 7 N -0.716 5.716 8 C 0.142 3.858 9 C 0.023 3.977 10 C -0.548 4.548 11 H 0.054 0.946 12 C 0.009 3.991 13 N -0.924 5.924 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.274 1.274 18 C -0.153 4.153 19 C 0.060 3.940 20 O -0.388 6.388 21 C 0.049 3.951 22 C -0.135 4.135 23 H 0.129 0.871 24 H 0.162 0.838 25 H 0.414 0.586 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.007 0.993 29 H 0.014 0.986 30 H 0.266 0.734 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.023 0.977 35 H 0.128 0.872 36 H 0.027 0.973 37 H 0.130 0.870 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -0.359 21.717 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.077 4.077 3 C 0.049 3.951 4 C -0.164 4.164 5 C 0.283 3.717 6 O -0.463 6.463 7 N -0.367 5.367 8 C 0.018 3.982 9 C -0.015 4.015 10 C -0.586 4.586 11 H 0.073 0.927 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.200 1.200 18 C -0.191 4.191 19 C -0.017 4.017 20 O -0.307 6.307 21 C -0.027 4.027 22 C -0.173 4.173 23 H 0.147 0.853 24 H 0.179 0.821 25 H 0.250 0.750 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.026 0.974 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.042 0.958 35 H 0.146 0.854 36 H 0.046 0.954 37 H 0.148 0.852 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.931 -1.020 21.744 22.120 hybrid contribution -0.368 0.062 -1.611 1.654 sum 3.563 -0.958 20.133 20.468 Atomic orbital electron populations 1.81152 1.14882 1.10076 1.10889 1.29561 0.95573 0.91621 0.90921 1.18446 0.79676 0.98778 0.98201 1.21957 1.06346 1.01019 0.87103 1.21456 0.79869 0.84004 0.86364 1.90651 1.39964 1.27930 1.87788 1.46130 1.53029 1.32038 1.05523 1.21136 0.97076 0.96641 0.83369 1.19131 0.96093 0.94851 0.91390 1.21504 1.32133 1.12747 0.92252 0.92731 1.25820 0.95094 0.95380 1.02691 1.70043 1.37570 1.22044 1.26702 0.85448 0.78349 0.78568 0.79000 1.19271 1.20320 1.19975 1.22572 1.03949 0.92784 0.99791 1.22640 0.97064 0.97485 0.84475 1.87931 1.71505 1.27829 1.43399 1.22824 0.97556 0.82344 1.00013 1.22397 1.05128 1.00129 0.89667 0.85337 0.82060 0.75003 0.93439 0.94701 0.97442 0.96766 0.92503 0.89951 0.86500 0.86984 0.95821 0.85417 0.95434 0.85165 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.90 18.54 20.01 0.37 -16.53 16 2 C 0.24 6.48 9.91 89.44 0.89 7.37 16 3 C 0.05 0.90 0.49 -53.87 -0.03 0.87 16 4 C -0.12 -1.81 4.75 29.85 0.14 -1.67 16 5 C 0.49 13.79 7.27 87.66 0.64 14.43 16 6 O -0.58 -21.39 12.52 -3.01 -0.04 -21.43 16 7 N -0.72 -21.86 5.56 -463.05 -2.57 -24.43 16 8 C 0.14 5.88 5.61 86.38 0.48 6.37 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C -0.55 -30.41 9.11 25.60 0.23 -30.18 16 11 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 12 C 0.01 0.51 5.46 84.66 0.46 0.97 16 13 N -0.92 -53.33 13.29 21.45 0.28 -53.04 16 14 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 C -0.15 -2.79 4.58 30.75 0.14 -2.65 16 19 C 0.06 1.14 6.62 72.08 0.48 1.62 16 20 O -0.39 -6.90 10.77 -148.98 -1.60 -8.50 16 21 C 0.05 0.64 6.61 72.01 0.48 1.12 16 22 C -0.14 -1.23 4.90 30.68 0.15 -1.08 16 23 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.41 10.11 8.47 -92.71 -0.79 9.32 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.08 2.11 5.62 -2.39 -0.01 2.10 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.02 0.55 7.38 -2.39 -0.02 0.53 16 35 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 0.47 7.38 -2.39 -0.02 0.46 16 37 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -75.83 316.38 2.96 -72.87 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.28 Total: 7.14 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 4.21 Total: -1.57 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -1.92 Total: -94.00 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.64 Total: -29.93 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.83 2.96 -72.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118754553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.449 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds