Wall clock time and date at job start Mon Mar 30 2020 04:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48505 * 109.46901 * 269.99799 * 3 2 1 5 5 H 1.48490 * 109.47378 * 30.00033 * 3 2 1 6 6 H 1.48502 * 109.46915 * 150.00285 * 3 2 1 7 7 C 1.37875 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99507 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99772 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99667 * 180.02562 * 11 10 9 14 14 C 1.48215 * 122.76251 * 359.97438 * 13 11 10 15 15 C 1.52645 * 111.29035 * 127.20272 * 14 13 11 16 16 C 1.53894 * 112.05915 * 47.45936 * 15 14 13 17 17 C 1.50650 * 106.92466 * 304.26595 * 16 15 14 18 18 H 1.08995 * 108.25465 * 309.63765 * 17 16 15 19 19 C 1.48739 * 120.99422 * 183.39498 * 17 16 15 20 20 O 1.21277 * 126.18819 * 31.35667 * 19 17 16 21 21 N 1.36408 * 107.63077 * 211.39787 * 19 17 16 22 22 C 1.48351 * 110.65997 * 6.02302 * 21 19 17 23 23 C 1.45539 * 122.75788 * 180.02562 * 13 11 10 24 24 H 1.09000 * 110.88404 * 121.37476 * 23 13 11 25 25 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.00117 * 9 7 2 27 27 H 1.08996 * 109.47276 * 299.99754 * 9 7 2 28 28 H 1.09002 * 109.46748 * 59.99788 * 10 9 7 29 29 H 1.08996 * 109.47408 * 300.00418 * 10 9 7 30 30 H 1.09002 * 109.10713 * 247.65451 * 14 13 11 31 31 H 1.08997 * 109.10441 * 6.75943 * 14 13 11 32 32 H 1.09003 * 108.97779 * 168.05579 * 15 14 13 33 33 H 1.08996 * 108.98278 * 286.77203 * 15 14 13 34 34 H 1.08996 * 109.97893 * 184.90482 * 16 15 14 35 35 H 1.09003 * 110.03572 * 63.65353 * 16 15 14 36 36 H 0.97000 * 124.66619 * 186.06193 * 21 19 17 37 37 H 1.09010 * 110.63903 * 261.82944 * 22 21 19 38 38 H 1.08994 * 110.77771 * 138.84318 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1656 -6.1344 0.0018 14 6 3.6460 -6.2058 0.0014 15 6 4.1586 -7.0906 1.1347 16 6 3.4045 -8.4302 1.2083 17 6 1.9396 -8.1024 1.3356 18 1 1.8204 -7.3793 2.1425 19 6 0.9262 -9.1776 1.5065 20 8 1.0955 -10.2382 2.0698 21 7 -0.2278 -8.7556 0.9143 22 6 -0.0124 -7.4708 0.2045 23 6 1.4994 -7.4284 0.0019 24 1 1.7933 -8.0168 -0.8673 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 3.9832 -6.6148 -0.9511 31 1 4.0516 -5.2013 0.1217 32 1 5.2185 -7.2902 0.9769 33 1 4.0358 -6.5624 2.0801 34 1 3.7360 -8.9968 2.0784 35 1 3.5791 -9.0074 0.3003 36 1 -1.0731 -9.2299 0.9526 37 1 -0.3416 -6.6326 0.8187 38 1 -0.5286 -7.4682 -0.7555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001614757818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:26 Heat of formation + Delta-G solvation = -68.050393 kcal Electronic energy + Delta-G solvation = -20673.738268 eV Core-core repulsion = 17515.969269 eV Total energy + Delta-G solvation = -3157.768999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32912 -39.08317 -37.13745 -35.75230 -33.54772 -32.92289 -31.25633 -30.38901 -27.46251 -25.82324 -25.18039 -22.95040 -21.99211 -20.96414 -19.84975 -18.56099 -17.32773 -16.80869 -16.50935 -15.84614 -15.73306 -15.34048 -14.66939 -14.54442 -14.35362 -13.81120 -13.70841 -13.53167 -12.97855 -12.91134 -12.56342 -12.25653 -12.20600 -11.55700 -11.48492 -11.12882 -11.01671 -10.97385 -10.91607 -10.62759 -10.05803 -10.03282 -9.68754 -9.36795 -9.15151 -8.86642 -8.53706 -8.36188 -6.00893 -4.05451 2.39691 2.86268 3.02018 3.26845 3.30212 3.36905 3.38980 4.03336 4.31258 4.43390 4.52855 4.73146 4.81390 4.95850 4.99394 5.18916 5.32740 5.34502 5.35696 5.56161 5.60500 5.66422 5.75030 5.84244 5.88874 6.03816 6.11938 6.15560 6.53526 6.60942 6.80984 6.84073 7.57822 7.68665 7.79110 8.00956 8.11026 8.31985 8.57052 9.02578 9.58570 11.09978 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.004313 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.253524 B = 6490.643193 C = 7060.070881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.521 3.479 12 O -0.528 6.528 13 N -0.615 5.615 14 C 0.110 3.890 15 C -0.135 4.135 16 C -0.092 4.092 17 C -0.155 4.155 18 H 0.109 0.891 19 C 0.536 3.464 20 O -0.529 6.529 21 N -0.744 5.744 22 C 0.106 3.894 23 C 0.131 3.869 24 H 0.091 0.909 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.110 0.890 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -15.930 -0.272 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.167 4.167 11 C 0.312 3.688 12 O -0.403 6.403 13 N -0.352 5.352 14 C -0.012 4.012 15 C -0.173 4.173 16 C -0.130 4.130 17 C -0.177 4.177 18 H 0.127 0.873 19 C 0.323 3.677 20 O -0.405 6.405 21 N -0.402 5.402 22 C -0.017 4.017 23 C 0.026 3.974 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.248 0.752 37 H 0.128 0.872 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.280 -16.217 0.016 17.390 hybrid contribution 0.079 0.779 -0.033 0.784 sum 6.359 -15.437 -0.017 16.696 Atomic orbital electron populations 1.69994 1.06060 1.26638 1.50099 1.25014 0.94814 0.99227 0.95233 0.86598 0.79789 0.83516 0.78089 1.20660 1.21219 1.19872 1.21199 0.92912 0.90974 1.51544 0.92617 1.18911 0.93144 0.89340 0.98633 1.21901 1.00796 0.91584 1.02464 1.21616 0.88345 0.85022 0.73816 1.90609 1.14214 1.86664 1.48832 1.48248 1.06828 1.04317 1.75795 1.21773 0.78897 1.01885 0.98665 1.21963 1.00163 0.95452 0.99744 1.20984 0.91590 0.97327 1.03098 1.21921 0.96442 0.98527 1.00805 0.87297 1.20234 0.84413 0.86201 0.76871 1.90719 1.81969 1.24251 1.43596 1.47213 1.12397 1.25468 1.55152 1.22378 0.94441 0.85766 0.99144 1.21741 0.93693 0.85752 0.96261 0.89104 0.92923 0.95782 0.95810 0.90149 0.90087 0.91366 0.88633 0.89998 0.91133 0.90550 0.91182 0.75240 0.87227 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.13 -2.38 4.08 -27.88 -0.11 -2.50 16 11 C 0.52 8.99 7.73 -10.98 -0.08 8.91 16 12 O -0.53 -10.82 12.99 5.56 0.07 -10.74 16 13 N -0.62 -7.88 2.87 -164.18 -0.47 -8.35 16 14 C 0.11 1.04 6.32 -3.28 -0.02 1.02 16 15 C -0.13 -1.08 5.87 -26.45 -0.16 -1.23 16 16 C -0.09 -0.84 5.86 -27.44 -0.16 -1.00 16 17 C -0.15 -1.76 2.13 -92.39 -0.20 -1.95 16 18 H 0.11 1.35 7.97 -51.93 -0.41 0.94 16 19 C 0.54 7.06 8.24 -11.18 -0.09 6.97 16 20 O -0.53 -8.64 18.02 5.56 0.10 -8.54 16 21 N -0.74 -8.45 6.42 -59.48 -0.38 -8.83 16 22 C 0.11 1.30 6.23 -3.23 -0.02 1.28 16 23 C 0.13 1.52 3.31 -67.17 -0.22 1.30 16 24 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.08 1.37 7.79 -51.93 -0.40 0.97 16 29 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.89 6.26 -51.93 -0.33 0.57 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.41 3.91 8.96 -40.82 -0.37 3.54 16 37 H 0.11 1.65 5.98 -51.92 -0.31 1.34 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -33.33 307.16 -7.50 -40.84 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.57 Total: 0.41 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.60 Total: 0.47 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.12 Total: -43.14 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.33 -7.50 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614757818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds