Wall clock time and date at job start Mon Mar 30 2020 04:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48505 * 109.46901 * 269.99799 * 3 2 1 5 5 H 1.48490 * 109.47378 * 30.00033 * 3 2 1 6 6 H 1.48502 * 109.46915 * 150.00285 * 3 2 1 7 7 C 1.37875 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99507 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99772 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99667 * 180.02562 * 11 10 9 14 14 C 1.48215 * 122.76251 * 359.97438 * 13 11 10 15 15 C 1.52645 * 111.29035 * 127.20272 * 14 13 11 16 16 C 1.53894 * 112.05915 * 47.45936 * 15 14 13 17 17 C 1.50650 * 106.92466 * 304.26595 * 16 15 14 18 18 H 1.08995 * 108.25465 * 309.63765 * 17 16 15 19 19 C 1.48739 * 120.99422 * 183.39498 * 17 16 15 20 20 O 1.21277 * 126.18819 * 31.35667 * 19 17 16 21 21 N 1.36408 * 107.63077 * 211.39787 * 19 17 16 22 22 C 1.48351 * 110.65997 * 6.02302 * 21 19 17 23 23 C 1.45539 * 122.75788 * 180.02562 * 13 11 10 24 24 H 1.09000 * 110.88404 * 121.37476 * 23 13 11 25 25 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.00117 * 9 7 2 27 27 H 1.08996 * 109.47276 * 299.99754 * 9 7 2 28 28 H 1.09002 * 109.46748 * 59.99788 * 10 9 7 29 29 H 1.08996 * 109.47408 * 300.00418 * 10 9 7 30 30 H 1.09002 * 109.10713 * 247.65451 * 14 13 11 31 31 H 1.08997 * 109.10441 * 6.75943 * 14 13 11 32 32 H 1.09003 * 108.97779 * 168.05579 * 15 14 13 33 33 H 1.08996 * 108.98278 * 286.77203 * 15 14 13 34 34 H 1.08996 * 109.97893 * 184.90482 * 16 15 14 35 35 H 1.09003 * 110.03572 * 63.65353 * 16 15 14 36 36 H 0.97000 * 124.66619 * 186.06193 * 21 19 17 37 37 H 1.09010 * 110.63903 * 261.82944 * 22 21 19 38 38 H 1.08994 * 110.77771 * 138.84318 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1656 -6.1344 0.0018 14 6 3.6460 -6.2058 0.0014 15 6 4.1586 -7.0906 1.1347 16 6 3.4045 -8.4302 1.2083 17 6 1.9396 -8.1024 1.3356 18 1 1.8204 -7.3793 2.1425 19 6 0.9262 -9.1776 1.5065 20 8 1.0955 -10.2382 2.0698 21 7 -0.2278 -8.7556 0.9143 22 6 -0.0124 -7.4708 0.2045 23 6 1.4994 -7.4284 0.0019 24 1 1.7933 -8.0168 -0.8673 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 3.9832 -6.6148 -0.9511 31 1 4.0516 -5.2013 0.1217 32 1 5.2185 -7.2902 0.9769 33 1 4.0358 -6.5624 2.0801 34 1 3.7360 -8.9968 2.0784 35 1 3.5791 -9.0074 0.3003 36 1 -1.0731 -9.2299 0.9526 37 1 -0.3416 -6.6326 0.8187 38 1 -0.5286 -7.4682 -0.7555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001614757818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:26 Heat of formation + Delta-G solvation = -92.444643 kcal Electronic energy + Delta-G solvation = -20674.796082 eV Core-core repulsion = 17515.969269 eV Total energy + Delta-G solvation = -3158.826813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35811 -40.33203 -38.28546 -36.75409 -35.53296 -33.96634 -32.94046 -31.44194 -28.67875 -27.41940 -26.19462 -24.39494 -22.81262 -22.52660 -20.77151 -19.86476 -18.59075 -18.36404 -17.53162 -17.24821 -16.89828 -16.50349 -16.37294 -15.80262 -15.49148 -14.89450 -14.85621 -14.52316 -14.23580 -14.04750 -13.94874 -13.74812 -13.38419 -13.17527 -12.79924 -12.47033 -12.40003 -12.17578 -11.88174 -11.87384 -11.70873 -11.52020 -11.25384 -11.13282 -10.55382 -10.53205 -10.07207 -9.58155 -8.15362 -6.28452 1.33410 1.44742 1.46570 1.57303 1.69338 1.82253 2.27872 2.45327 3.06493 3.18441 3.38008 3.61085 3.90872 3.97804 4.01871 4.16905 4.25793 4.42547 4.50531 4.56582 4.61126 4.71169 4.79274 4.86439 4.92402 5.05161 5.15081 5.19573 5.38310 5.52158 5.58123 5.61225 5.68445 5.87956 5.89353 6.21185 6.39967 6.90630 7.10192 7.26597 7.41941 8.97024 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.004313 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.253524 B = 6490.643193 C = 7060.070881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.519 3.481 12 O -0.573 6.573 13 N -0.604 5.604 14 C 0.101 3.899 15 C -0.127 4.127 16 C -0.090 4.090 17 C -0.147 4.147 18 H 0.096 0.904 19 C 0.534 3.466 20 O -0.563 6.563 21 N -0.733 5.733 22 C 0.108 3.892 23 C 0.130 3.870 24 H 0.118 0.882 25 H 0.261 0.739 26 H -0.016 1.016 27 H -0.018 1.018 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.417 0.583 37 H 0.080 0.920 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 -16.388 -0.889 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.155 4.155 11 C 0.310 3.690 12 O -0.452 6.452 13 N -0.338 5.338 14 C -0.020 4.020 15 C -0.165 4.165 16 C -0.128 4.128 17 C -0.169 4.169 18 H 0.114 0.886 19 C 0.321 3.679 20 O -0.441 6.441 21 N -0.391 5.391 22 C -0.015 4.015 23 C 0.025 3.975 24 H 0.136 0.864 25 H 0.070 0.930 26 H 0.003 0.997 27 H 0.001 0.999 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.257 0.743 37 H 0.098 0.902 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.425 -16.709 -0.609 19.194 hybrid contribution -0.930 0.860 0.169 1.278 sum 8.495 -15.849 -0.440 17.988 Atomic orbital electron populations 1.70172 1.08239 1.27668 1.51681 1.26075 0.95644 1.03746 0.94782 0.85387 0.78751 0.78055 0.78461 1.19788 1.21487 1.17890 1.21723 0.94001 0.91652 1.50452 0.90617 1.18689 0.93701 0.92306 0.94783 1.21631 0.99313 0.89985 1.04563 1.21277 0.87672 0.85968 0.74061 1.90612 1.15980 1.87422 1.51150 1.48140 1.08541 1.03332 1.73798 1.22158 0.76156 1.02916 1.00759 1.21936 1.01617 0.94198 0.98741 1.21049 0.89612 0.98235 1.03883 1.21917 0.97792 0.97262 0.99974 0.88617 1.20524 0.85089 0.86003 0.76268 1.90702 1.82604 1.25703 1.45134 1.47165 1.12592 1.24902 1.54402 1.22224 0.95553 0.84912 0.98823 1.21917 0.92947 0.85177 0.97465 0.86424 0.92983 0.99708 0.99936 0.88092 0.87725 0.88596 0.88183 0.86874 0.91939 0.90576 0.89653 0.74318 0.90217 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 8 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 9 C 0.04 2.26 4.26 29.85 0.13 2.38 16 10 C -0.12 -4.22 4.08 29.85 0.12 -4.09 16 11 C 0.52 17.83 7.73 87.66 0.68 18.51 16 12 O -0.57 -24.45 12.99 -3.03 -0.04 -24.49 16 13 N -0.60 -14.28 2.87 -791.73 -2.27 -16.55 16 14 C 0.10 1.50 6.32 85.93 0.54 2.05 16 15 C -0.13 -1.54 5.87 30.78 0.18 -1.36 16 16 C -0.09 -1.36 5.86 30.13 0.18 -1.18 16 17 C -0.15 -3.11 2.13 -11.94 -0.03 -3.14 16 18 H 0.10 2.31 7.97 -2.39 -0.02 2.29 16 19 C 0.53 13.63 8.24 86.79 0.72 14.34 16 20 O -0.56 -18.06 18.02 -3.02 -0.05 -18.12 16 21 N -0.73 -16.34 6.42 -459.56 -2.95 -19.29 16 22 C 0.11 2.64 6.23 85.89 0.53 3.18 16 23 C 0.13 2.78 3.31 46.00 0.15 2.93 16 24 H 0.12 2.00 8.09 -2.39 -0.02 1.98 16 25 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 26 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 27 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 28 H 0.10 3.26 7.79 -2.39 -0.02 3.24 16 29 H 0.10 3.32 8.03 -2.39 -0.02 3.30 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.46 6.26 -2.39 -0.01 1.44 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.07 8.07 -2.39 -0.02 1.05 16 36 H 0.42 7.85 8.96 -92.71 -0.83 7.02 16 37 H 0.08 2.51 5.98 -2.38 -0.01 2.50 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.70 307.16 1.13 -74.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.24 Total: 12.02 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 3.90 Total: 4.53 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.94 Total: -93.62 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.09 Total: -42.60 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -75.70 1.13 -74.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614757818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.873 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds