Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47256 * 269.99683 * 3 2 1 5 5 H 1.48499 * 109.47012 * 29.99635 * 3 2 1 6 6 H 1.48504 * 109.47177 * 149.99818 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46961 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00261 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99662 * 179.97438 * 11 10 9 14 14 C 1.48215 * 122.75986 * 0.02562 * 13 11 10 15 15 C 1.52645 * 111.29035 * 232.85589 * 14 13 11 16 16 C 1.53994 * 112.00404 * 312.46658 * 15 14 13 17 17 C 1.50659 * 106.90278 * 55.80041 * 16 15 14 18 18 H 1.08998 * 108.25500 * 50.32330 * 17 16 15 19 19 C 1.48742 * 120.99386 * 176.57055 * 17 16 15 20 20 O 1.21281 * 126.18278 * 328.62130 * 19 17 16 21 21 N 1.36400 * 107.62657 * 148.59920 * 19 17 16 22 22 C 1.48356 * 110.66296 * 353.97757 * 21 19 17 23 23 C 1.45532 * 122.75799 * 179.97438 * 13 11 10 24 24 H 1.08998 * 110.88502 * 238.62199 * 23 13 11 25 25 H 0.97008 * 119.99872 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47461 * 59.99552 * 9 7 2 27 27 H 1.09001 * 109.46849 * 299.99313 * 9 7 2 28 28 H 1.09000 * 109.46621 * 59.99950 * 10 9 7 29 29 H 1.08996 * 109.47282 * 299.99958 * 10 9 7 30 30 H 1.09002 * 109.10713 * 353.30767 * 14 13 11 31 31 H 1.08997 * 109.10441 * 112.41259 * 14 13 11 32 32 H 1.09006 * 108.97812 * 73.17852 * 15 14 13 33 33 H 1.09000 * 108.97948 * 191.87680 * 15 14 13 34 34 H 1.09004 * 110.00726 * 296.44472 * 16 15 14 35 35 H 1.09001 * 110.03360 * 175.17012 * 16 15 14 36 36 H 0.97003 * 124.65978 * 173.97474 * 21 19 17 37 37 H 1.09002 * 110.63857 * 221.22207 * 22 21 19 38 38 H 1.08999 * 110.77660 * 98.24084 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9671 0.0011 13 7 2.1654 -6.1344 0.0008 14 6 3.6458 -6.2058 0.0002 15 6 4.1577 -7.0901 -1.1338 16 6 3.4035 -8.4309 -1.2053 17 6 1.9384 -8.1031 -1.3319 18 1 1.8187 -7.3805 -2.1390 19 6 0.9249 -9.1785 -1.5015 20 8 1.0938 -10.2392 -2.0647 21 7 -0.2287 -8.7560 -0.9087 22 6 -0.0127 -7.4709 -0.1998 23 6 1.4992 -7.4283 0.0019 24 1 1.7937 -8.0163 0.8711 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.8717 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 4.0514 -5.2012 -0.1198 31 1 3.9836 -6.6154 0.9522 32 1 4.0334 -6.5617 -2.0791 33 1 5.2179 -7.2889 -0.9774 34 1 3.5788 -9.0063 -0.2963 35 1 3.7340 -8.9993 -2.0747 36 1 -1.0738 -9.2307 -0.9458 37 1 -0.5282 -7.4705 0.7606 38 1 -0.3427 -6.6315 -0.8118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001614757819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = -68.013211 kcal Electronic energy + Delta-G solvation = -20673.616210 eV Core-core repulsion = 17515.848823 eV Total energy + Delta-G solvation = -3157.767386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32780 -39.08282 -37.13514 -35.75070 -33.54877 -32.91857 -31.25723 -30.38917 -27.46324 -25.82234 -25.17775 -22.95010 -21.99382 -20.96400 -19.84946 -18.56178 -17.32718 -16.80874 -16.51003 -15.84556 -15.73292 -15.33905 -14.66826 -14.54344 -14.35336 -13.80990 -13.70844 -13.53116 -12.97772 -12.91114 -12.56373 -12.25690 -12.20623 -11.55554 -11.48470 -11.13200 -11.01356 -10.97154 -10.91996 -10.62767 -10.05797 -10.03252 -9.68752 -9.36819 -9.15222 -8.86520 -8.53711 -8.36292 -6.00901 -4.05452 2.39729 2.86291 3.01952 3.26839 3.30238 3.36909 3.38948 4.03305 4.31197 4.43382 4.52890 4.73201 4.81386 4.95772 4.99464 5.18878 5.32732 5.34527 5.35589 5.56109 5.60465 5.66446 5.75004 5.84159 5.88929 6.03769 6.11929 6.15590 6.53577 6.60996 6.80961 6.84036 7.57789 7.68636 7.79095 8.00905 8.11058 8.31998 8.57020 9.02558 9.58563 11.09962 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.004313 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.198943 B = 6490.617553 C = 7060.079400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.521 3.479 12 O -0.528 6.528 13 N -0.615 5.615 14 C 0.110 3.890 15 C -0.135 4.135 16 C -0.092 4.092 17 C -0.155 4.155 18 H 0.109 0.891 19 C 0.536 3.464 20 O -0.529 6.529 21 N -0.744 5.744 22 C 0.106 3.894 23 C 0.131 3.869 24 H 0.091 0.909 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.087 0.913 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -15.926 0.285 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.167 4.167 11 C 0.312 3.688 12 O -0.403 6.403 13 N -0.352 5.352 14 C -0.012 4.012 15 C -0.173 4.173 16 C -0.130 4.130 17 C -0.177 4.177 18 H 0.127 0.873 19 C 0.323 3.677 20 O -0.405 6.405 21 N -0.402 5.402 22 C -0.017 4.017 23 C 0.026 3.974 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.278 -16.213 0.007 17.386 hybrid contribution 0.079 0.779 0.012 0.783 sum 6.357 -15.434 0.020 16.692 Atomic orbital electron populations 1.69990 1.06065 1.26635 1.50089 1.25011 0.94811 0.99224 0.95231 0.86601 0.79792 0.83522 0.78095 1.20664 1.21215 1.19866 1.21199 0.92912 0.90974 1.51556 0.92616 1.18911 0.93144 0.89340 0.98633 1.21902 1.00796 0.91581 1.02464 1.21620 0.88345 0.85022 0.73811 1.90608 1.14215 1.86659 1.48840 1.48247 1.06830 1.04319 1.75790 1.21773 0.78899 1.01889 0.98666 1.21981 1.00161 0.95440 0.99736 1.21005 0.91586 0.97315 1.03096 1.21926 0.96444 0.98523 1.00805 0.87296 1.20234 0.84416 0.86206 0.76868 1.90720 1.81967 1.24248 1.43609 1.47214 1.12425 1.25407 1.55177 1.22384 0.94440 0.85782 0.99140 1.21741 0.93694 0.85750 0.96263 0.89107 0.92922 0.95833 0.95761 0.90091 0.90142 0.88632 0.91367 0.91130 0.89998 0.91183 0.90544 0.75239 0.89505 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.13 -2.38 4.08 -27.88 -0.11 -2.50 16 11 C 0.52 8.99 7.73 -10.98 -0.08 8.90 16 12 O -0.53 -10.82 12.99 5.56 0.07 -10.74 16 13 N -0.62 -7.88 2.87 -164.18 -0.47 -8.35 16 14 C 0.11 1.04 6.32 -3.28 -0.02 1.01 16 15 C -0.13 -1.08 5.88 -26.39 -0.16 -1.23 16 16 C -0.09 -0.84 5.87 -27.38 -0.16 -1.00 16 17 C -0.15 -1.76 2.13 -92.38 -0.20 -1.95 16 18 H 0.11 1.35 7.97 -51.93 -0.41 0.94 16 19 C 0.54 7.06 8.24 -11.18 -0.09 6.97 16 20 O -0.53 -8.64 18.02 5.56 0.10 -8.54 16 21 N -0.74 -8.45 6.42 -59.48 -0.38 -8.83 16 22 C 0.11 1.30 6.23 -3.23 -0.02 1.28 16 23 C 0.13 1.52 3.31 -67.17 -0.22 1.30 16 24 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 29 H 0.08 1.37 7.79 -51.93 -0.40 0.97 16 30 H 0.10 0.89 6.26 -51.93 -0.33 0.57 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.41 3.91 8.96 -40.82 -0.37 3.54 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.11 1.66 5.97 -51.93 -0.31 1.35 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -33.33 307.15 -7.50 -40.83 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.57 Total: 0.42 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.60 Total: 0.47 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.12 Total: -43.13 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.33 -7.50 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614757819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.184 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds