Wall clock time and date at job start Mon Mar 30 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 119.99690 * 2 1 4 4 H 1.08007 * 120.00006 * 202.60360 * 3 2 1 5 5 C 1.38815 * 120.00401 * 22.60592 * 3 2 1 6 6 N 1.31620 * 119.99874 * 11.97435 * 5 3 2 7 7 Si 1.86804 * 120.00146 * 191.97930 * 5 3 2 8 8 H 1.48497 * 109.47075 * 89.99969 * 7 5 3 9 9 H 1.48495 * 109.46706 * 209.99648 * 7 5 3 10 10 H 1.48498 * 109.47088 * 329.99884 * 7 5 3 11 11 C 1.46496 * 120.00197 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.57624 * 179.84480 * 11 2 1 13 13 C 1.53119 * 109.52309 * 299.99842 * 11 2 1 14 14 C 1.53033 * 109.28196 * 177.55846 * 13 11 2 15 15 N 1.46852 * 109.52296 * 300.82272 * 14 13 11 16 16 C 1.46904 * 110.99849 * 185.83692 * 15 14 13 17 17 C 1.46852 * 111.19664 * 61.74125 * 15 14 13 18 18 H 1.08993 * 109.46188 * 58.27456 * 17 15 14 19 19 C 1.52997 * 109.45896 * 178.25430 * 17 15 14 20 20 F 1.39899 * 109.47611 * 54.65594 * 19 17 15 21 21 F 1.39899 * 109.47144 * 174.66114 * 19 17 15 22 22 F 1.39904 * 109.46909 * 294.65389 * 19 17 15 23 23 C 1.53033 * 109.51245 * 298.26240 * 17 15 14 24 24 H 1.09001 * 109.47288 * 273.87441 * 1 2 3 25 25 H 1.09004 * 109.47405 * 33.87873 * 1 2 3 26 26 H 1.08996 * 109.47033 * 153.87625 * 1 2 3 27 27 H 0.96992 * 120.00136 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.50297 * 57.61860 * 13 11 2 29 29 H 1.08998 * 109.53794 * 297.52090 * 13 11 2 30 30 H 1.08994 * 109.46811 * 180.80531 * 14 13 11 31 31 H 1.09006 * 109.45111 * 60.82886 * 14 13 11 32 32 H 1.09007 * 109.47076 * 287.98854 * 16 15 14 33 33 H 1.08996 * 109.47163 * 47.98572 * 16 15 14 34 34 H 1.09003 * 109.46832 * 167.98770 * 16 15 14 35 35 H 1.09000 * 109.50512 * 179.11981 * 23 17 15 36 36 H 1.08999 * 109.50196 * 299.23494 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1674 1.2219 -0.3595 5 6 1.5355 2.3419 0.4621 6 7 0.3945 2.2656 1.1138 7 14 2.3284 4.0059 0.1588 8 1 1.8406 4.5592 -1.1300 9 1 1.9708 4.9330 1.2624 10 1 3.8039 3.8484 0.1031 11 6 2.1975 -1.2687 -0.0006 12 1 3.2695 -1.0714 -0.0033 13 6 1.8285 -2.0732 1.2489 14 6 2.5495 -3.4225 1.2123 15 7 2.1569 -4.1561 0.0023 16 6 2.7218 -5.5122 0.0023 17 6 2.5438 -3.4248 -1.2110 18 1 3.6213 -3.2607 -1.2080 19 6 2.1560 -4.2427 -2.4445 20 9 0.7943 -4.5578 -2.3860 21 9 2.4126 -3.4954 -3.5990 22 9 2.9069 -5.4227 -2.4764 23 6 1.8225 -2.0756 -1.2464 24 1 -0.3634 0.0694 1.0253 25 1 -0.3634 0.8532 -0.5729 26 1 -0.3633 -0.9227 -0.4525 27 1 -0.0344 3.0732 1.4370 28 1 0.7511 -2.2368 1.2713 29 1 2.1315 -1.5227 2.1395 30 1 2.2778 -4.0036 2.0935 31 1 3.6271 -3.2581 1.2038 32 1 3.7957 -5.4585 -0.1772 33 1 2.5380 -5.9824 0.9683 34 1 2.2510 -6.1018 -0.7844 35 1 2.1217 -1.5263 -2.1391 36 1 0.7450 -2.2393 -1.2633 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:27 Heat of formation + Delta-G solvation = -121.033902 kcal Electronic energy + Delta-G solvation = -22003.364423 eV Core-core repulsion = 18301.441146 eV Total energy + Delta-G solvation = -3701.923276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.03487 -47.59413 -47.37493 -39.04185 -35.66543 -32.53820 -31.54078 -30.03208 -26.64006 -25.97400 -25.30309 -23.27820 -22.35574 -21.05507 -19.19867 -18.33061 -18.01368 -17.37351 -16.64084 -15.24694 -15.08620 -14.88265 -14.56325 -14.46473 -14.13079 -13.89527 -13.75229 -13.64706 -13.54314 -13.27816 -13.14135 -12.54186 -12.14719 -12.08977 -11.70367 -11.48268 -11.07371 -11.02883 -10.83597 -10.69735 -10.35159 -10.22221 -10.08779 -9.83101 -9.61953 -8.55768 -8.43188 -6.77041 -5.72482 -3.18949 2.81628 3.38033 3.44315 3.45402 3.59215 3.91082 4.13956 4.46654 4.52802 5.00373 5.08589 5.14451 5.29918 5.41674 5.47397 5.55110 5.66490 5.83261 5.85730 5.88639 6.07715 6.16955 6.35910 6.50640 6.71395 6.88332 6.89659 7.02620 7.06418 7.42770 7.75001 7.82025 8.39593 9.23625 9.86485 10.35752 11.32288 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.005646 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.953580 B = 4958.012255 C = 5302.338500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.184 3.816 12 H 0.061 0.939 13 C -0.132 4.132 14 C 0.064 3.936 15 N -0.530 5.530 16 C 0.006 3.994 17 C 0.049 3.951 18 H 0.080 0.920 19 C 0.456 3.544 20 F -0.172 7.172 21 F -0.181 7.181 22 F -0.189 7.189 23 C -0.131 4.131 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.001 0.999 27 H 0.252 0.748 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -14.265 -3.303 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.075 3.925 12 H 0.079 0.921 13 C -0.172 4.172 14 C -0.064 4.064 15 N -0.255 5.255 16 C -0.142 4.142 17 C -0.062 4.062 18 H 0.097 0.903 19 C 0.402 3.598 20 F -0.153 7.153 21 F -0.162 7.162 22 F -0.171 7.171 23 C -0.171 4.171 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.624 -14.141 -3.243 14.954 hybrid contribution 1.160 0.788 -0.316 1.438 sum 4.784 -13.353 -3.560 14.624 Atomic orbital electron populations 1.20774 0.82476 0.95698 0.99237 1.43904 1.01912 0.99939 1.85691 1.19235 0.98098 0.85449 1.35873 0.91423 1.25014 0.97770 0.98466 0.98284 1.70072 1.18429 1.27104 1.39528 0.86253 0.78743 0.84139 0.77375 1.21491 1.21759 1.20545 1.20219 0.95843 0.86177 0.90216 0.92081 1.22236 1.01173 0.92991 1.00793 1.22188 0.97781 0.95827 0.90594 1.61923 1.59888 1.02463 1.01268 1.22827 0.97729 0.90192 1.03469 1.22838 1.00960 0.95039 0.87376 0.90251 1.20619 0.75199 0.78243 0.85781 1.93186 1.32416 1.93204 1.96518 1.93176 1.93922 1.76398 1.52724 1.93117 1.76808 1.50466 1.96697 1.22322 1.01490 0.90850 1.02408 0.95329 0.93855 0.98081 0.93742 0.91248 0.90991 0.90479 0.94707 0.95084 0.91027 0.90410 0.90407 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 7.97 59.85 0.48 4.44 16 2 N -0.59 -14.46 2.82 -173.36 -0.49 -14.95 16 3 C -0.26 -6.92 9.60 -15.06 -0.14 -7.07 16 4 H 0.07 1.78 7.82 -52.48 -0.41 1.37 16 5 C 0.00 0.08 5.11 -17.43 -0.09 0.00 16 6 N -0.91 -26.16 10.64 55.49 0.59 -25.57 16 7 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.18 3.60 2.66 -67.82 -0.18 3.42 16 12 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 13 C -0.13 -2.30 5.41 -26.65 -0.14 -2.45 16 14 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 15 N -0.53 -7.35 4.58 -234.92 -1.08 -8.43 16 16 C 0.01 0.07 8.30 60.07 0.50 0.56 16 17 C 0.05 0.70 1.95 -67.72 -0.13 0.57 16 18 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.46 6.44 2.44 37.16 0.09 6.53 16 20 F -0.17 -2.62 16.82 2.25 0.04 -2.58 16 21 F -0.18 -2.65 16.61 2.25 0.04 -2.61 16 22 F -0.19 -2.47 14.03 2.25 0.03 -2.43 16 23 C -0.13 -2.25 4.42 -26.66 -0.12 -2.36 16 24 H 0.03 0.75 7.43 -51.93 -0.39 0.37 16 25 H 0.04 1.15 7.20 -51.93 -0.37 0.77 16 26 H 0.00 0.02 6.38 -51.93 -0.33 -0.31 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.30 7.60 -51.93 -0.39 0.90 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 0.95 7.99 -51.93 -0.42 0.53 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.33 8.02 -51.93 -0.42 -0.08 16 33 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.08 0.91 5.99 -51.93 -0.31 0.60 16 35 H 0.08 1.37 7.71 -51.93 -0.40 0.97 16 36 H 0.08 1.49 6.36 -51.93 -0.33 1.16 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -28.38 290.72 -6.27 -34.65 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.99 Total: -3.59 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.24 Total: 4.50 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.97 Total: -48.95 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.11 Total: -7.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.38 -6.27 -34.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.383 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds