Wall clock time and date at job start Mon Mar 30 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 119.99690 * 2 1 4 4 H 1.08007 * 120.00006 * 202.60360 * 3 2 1 5 5 C 1.38815 * 120.00401 * 22.60592 * 3 2 1 6 6 N 1.31620 * 119.99874 * 11.97435 * 5 3 2 7 7 Si 1.86804 * 120.00146 * 191.97930 * 5 3 2 8 8 H 1.48497 * 109.47075 * 89.99969 * 7 5 3 9 9 H 1.48495 * 109.46706 * 209.99648 * 7 5 3 10 10 H 1.48498 * 109.47088 * 329.99884 * 7 5 3 11 11 C 1.46496 * 120.00197 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.57624 * 179.84480 * 11 2 1 13 13 C 1.53119 * 109.52309 * 299.99842 * 11 2 1 14 14 C 1.53033 * 109.28196 * 177.55846 * 13 11 2 15 15 N 1.46852 * 109.52296 * 300.82272 * 14 13 11 16 16 C 1.46904 * 110.99849 * 185.83692 * 15 14 13 17 17 C 1.46852 * 111.19664 * 61.74125 * 15 14 13 18 18 H 1.08993 * 109.46188 * 58.27456 * 17 15 14 19 19 C 1.52997 * 109.45896 * 178.25430 * 17 15 14 20 20 F 1.39899 * 109.47611 * 54.65594 * 19 17 15 21 21 F 1.39899 * 109.47144 * 174.66114 * 19 17 15 22 22 F 1.39904 * 109.46909 * 294.65389 * 19 17 15 23 23 C 1.53033 * 109.51245 * 298.26240 * 17 15 14 24 24 H 1.09001 * 109.47288 * 273.87441 * 1 2 3 25 25 H 1.09004 * 109.47405 * 33.87873 * 1 2 3 26 26 H 1.08996 * 109.47033 * 153.87625 * 1 2 3 27 27 H 0.96992 * 120.00136 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.50297 * 57.61860 * 13 11 2 29 29 H 1.08998 * 109.53794 * 297.52090 * 13 11 2 30 30 H 1.08994 * 109.46811 * 180.80531 * 14 13 11 31 31 H 1.09006 * 109.45111 * 60.82886 * 14 13 11 32 32 H 1.09007 * 109.47076 * 287.98854 * 16 15 14 33 33 H 1.08996 * 109.47163 * 47.98572 * 16 15 14 34 34 H 1.09003 * 109.46832 * 167.98770 * 16 15 14 35 35 H 1.09000 * 109.50512 * 179.11981 * 23 17 15 36 36 H 1.08999 * 109.50196 * 299.23494 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1674 1.2219 -0.3595 5 6 1.5355 2.3419 0.4621 6 7 0.3945 2.2656 1.1138 7 14 2.3284 4.0059 0.1588 8 1 1.8406 4.5592 -1.1300 9 1 1.9708 4.9330 1.2624 10 1 3.8039 3.8484 0.1031 11 6 2.1975 -1.2687 -0.0006 12 1 3.2695 -1.0714 -0.0033 13 6 1.8285 -2.0732 1.2489 14 6 2.5495 -3.4225 1.2123 15 7 2.1569 -4.1561 0.0023 16 6 2.7218 -5.5122 0.0023 17 6 2.5438 -3.4248 -1.2110 18 1 3.6213 -3.2607 -1.2080 19 6 2.1560 -4.2427 -2.4445 20 9 0.7943 -4.5578 -2.3860 21 9 2.4126 -3.4954 -3.5990 22 9 2.9069 -5.4227 -2.4764 23 6 1.8225 -2.0756 -1.2464 24 1 -0.3634 0.0694 1.0253 25 1 -0.3634 0.8532 -0.5729 26 1 -0.3633 -0.9227 -0.4525 27 1 -0.0344 3.0732 1.4370 28 1 0.7511 -2.2368 1.2713 29 1 2.1315 -1.5227 2.1395 30 1 2.2778 -4.0036 2.0935 31 1 3.6271 -3.2581 1.2038 32 1 3.7957 -5.4585 -0.1772 33 1 2.5380 -5.9824 0.9683 34 1 2.2510 -6.1018 -0.7844 35 1 2.1217 -1.5263 -2.1391 36 1 0.7450 -2.2393 -1.2633 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:27 Heat of formation + Delta-G solvation = -138.364514 kcal Electronic energy + Delta-G solvation = -22004.115934 eV Core-core repulsion = 18301.441146 eV Total energy + Delta-G solvation = -3702.674788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.15922 -48.69684 -48.53179 -40.33538 -37.34662 -34.24736 -32.78166 -31.78310 -28.07172 -27.87351 -26.49270 -24.85372 -23.65675 -22.45716 -20.60125 -19.46934 -19.21952 -18.90359 -18.33165 -16.85375 -16.44159 -16.15305 -15.75371 -15.67729 -15.44427 -15.26641 -14.97981 -14.91057 -14.78857 -14.69433 -14.65131 -14.08711 -13.78483 -13.31694 -12.96792 -12.88490 -12.80380 -12.51135 -12.41840 -12.40021 -12.11474 -12.02549 -11.71254 -11.52512 -11.23322 -10.61929 -9.48357 -8.77633 -7.80879 -5.29049 1.47504 1.49198 1.57266 1.67824 2.49995 2.50830 2.77767 2.98647 3.33209 3.36958 3.60845 3.91449 3.97482 4.05976 4.22175 4.37944 4.48029 4.52154 4.59809 4.66343 4.80514 4.89041 4.98987 5.02485 5.11425 5.25511 5.44310 5.49337 5.65811 5.74165 5.82524 5.94450 6.34727 7.16884 7.88866 8.33508 9.22614 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.005646 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.953580 B = 4958.012255 C = 5302.338500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.610 5.610 3 C -0.263 4.263 4 H 0.073 0.927 5 C -0.052 4.052 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.288 1.288 9 H -0.296 1.296 10 H -0.267 1.267 11 C 0.179 3.821 12 H 0.061 0.939 13 C -0.123 4.123 14 C 0.074 3.926 15 N -0.543 5.543 16 C 0.007 3.993 17 C 0.054 3.946 18 H 0.097 0.903 19 C 0.462 3.538 20 F -0.179 7.179 21 F -0.185 7.185 22 F -0.179 7.179 23 C -0.119 4.119 24 H 0.003 0.997 25 H 0.013 0.987 26 H 0.025 0.975 27 H 0.247 0.753 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -15.776 -3.554 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.331 5.331 3 C -0.393 4.393 4 H 0.091 0.909 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.223 1.223 10 H -0.192 1.192 11 C 0.072 3.928 12 H 0.080 0.920 13 C -0.163 4.163 14 C -0.053 4.053 15 N -0.269 5.269 16 C -0.140 4.140 17 C -0.057 4.057 18 H 0.114 0.886 19 C 0.407 3.593 20 F -0.161 7.161 21 F -0.166 7.166 22 F -0.160 7.160 23 C -0.159 4.159 24 H 0.021 0.979 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.194 -15.698 -3.507 16.903 hybrid contribution 0.696 1.177 -0.260 1.392 sum 5.890 -14.522 -3.767 16.117 Atomic orbital electron populations 1.20432 0.83024 0.95517 0.97293 1.44118 1.01922 1.01185 1.85913 1.19596 0.98318 0.86643 1.34767 0.90939 1.25763 0.98518 1.01755 0.98705 1.70237 1.19889 1.27433 1.41006 0.85260 0.78498 0.79964 0.76685 1.21550 1.22276 1.19165 1.20428 0.95315 0.84845 0.92234 0.92046 1.22031 1.00597 0.94882 0.98749 1.22077 0.97934 0.93784 0.91537 1.61877 1.60745 1.03500 1.00734 1.22870 0.98233 0.88387 1.04542 1.22698 1.01367 0.93538 0.88056 0.88564 1.20482 0.74921 0.78463 0.85444 1.93176 1.33105 1.93269 1.96529 1.93174 1.93907 1.76572 1.52953 1.93139 1.76473 1.49793 1.96644 1.22052 1.00896 0.92283 1.00657 0.97909 0.96771 0.95623 0.94359 0.92839 0.92665 0.88268 0.93294 0.93918 0.89218 0.90673 0.91120 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 7.97 127.77 1.02 10.14 16 2 N -0.61 -29.97 2.82 -702.39 -1.98 -31.95 16 3 C -0.26 -14.24 9.60 84.03 0.81 -13.43 16 4 H 0.07 3.77 7.82 -2.91 -0.02 3.75 16 5 C -0.05 -2.92 5.11 84.86 0.43 -2.49 16 6 N -0.94 -55.60 10.64 21.65 0.23 -55.37 16 7 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 8 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 9 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 C 0.18 6.86 2.66 45.06 0.12 6.98 16 12 H 0.06 2.34 7.87 -2.39 -0.02 2.32 16 13 C -0.12 -4.17 5.41 30.64 0.17 -4.01 16 14 C 0.07 1.83 5.46 86.32 0.47 2.30 16 15 N -0.54 -13.45 4.58 -897.16 -4.11 -17.56 16 16 C 0.01 0.13 8.30 127.69 1.06 1.19 16 17 C 0.05 1.43 1.95 44.93 0.09 1.52 16 18 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 19 C 0.46 11.98 2.44 71.98 0.18 12.15 16 20 F -0.18 -5.15 16.82 44.97 0.76 -4.39 16 21 F -0.18 -5.07 16.61 44.97 0.75 -4.32 16 22 F -0.18 -4.14 14.03 44.97 0.63 -3.51 16 23 C -0.12 -3.96 4.42 30.64 0.14 -3.82 16 24 H 0.00 0.14 7.43 -2.39 -0.02 0.13 16 25 H 0.01 0.75 7.20 -2.39 -0.02 0.73 16 26 H 0.03 1.12 6.38 -2.39 -0.02 1.11 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.05 1.98 7.60 -2.39 -0.02 1.96 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.10 2.07 7.99 -2.39 -0.02 2.05 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.04 0.73 8.02 -2.38 -0.02 0.71 16 33 H 0.09 1.41 7.95 -2.39 -0.02 1.39 16 34 H 0.07 1.50 5.99 -2.39 -0.01 1.48 16 35 H 0.07 2.43 7.71 -2.39 -0.02 2.41 16 36 H 0.07 2.42 6.36 -2.39 -0.02 2.40 16 Total: -1.00 -60.97 290.72 3.85 -57.11 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.08 Total: 2.56 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.47 Total: 10.53 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -5.86 Total: -104.88 kcal Atomic # 9 Polarization: -14.35 SS G_CDS: 2.13 Total: -12.22 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -60.97 3.85 -57.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.253 kcal (2) G-P(sol) polarization free energy of solvation -60.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds