Wall clock time and date at job start Mon Mar 30 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99932 * 2 1 4 4 H 1.09002 * 109.47510 * 324.99665 * 3 2 1 5 5 C 1.52998 * 109.47357 * 85.00031 * 3 2 1 6 6 C 1.50707 * 109.46783 * 204.99968 * 3 2 1 7 7 C 1.34666 * 125.98580 * 154.98522 * 6 3 2 8 8 N 1.36888 * 106.81628 * 180.02562 * 7 6 3 9 9 C 1.46494 * 126.39835 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47195 * 264.99885 * 9 8 7 11 11 O 1.21286 * 119.99832 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99952 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99824 * 180.02562 * 12 10 9 14 14 H 1.07992 * 119.99886 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99655 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99687 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47070 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46650 * 119.99829 * 17 15 13 20 20 H 1.48493 * 109.47195 * 239.99896 * 17 15 13 21 21 C 1.35039 * 107.20370 * 359.97438 * 8 7 6 22 22 C 1.50700 * 125.65013 * 180.02562 * 21 8 7 23 23 N 1.30504 * 108.70033 * 359.97438 * 21 8 7 24 24 H 1.08997 * 109.47612 * 299.99851 * 1 2 3 25 25 H 1.09004 * 109.47066 * 60.00014 * 1 2 3 26 26 H 1.08996 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.00902 * 110.99534 * 123.95595 * 2 1 3 28 28 H 1.08999 * 109.46880 * 299.99949 * 5 3 2 29 29 H 1.09002 * 109.47109 * 59.99389 * 5 3 2 30 30 H 1.08998 * 109.47661 * 179.97438 * 5 3 2 31 31 H 1.08000 * 126.59547 * 0.02562 * 7 6 3 32 32 H 1.09000 * 109.47374 * 25.00142 * 9 8 7 33 33 H 1.09003 * 109.47322 * 144.99675 * 9 8 7 34 34 H 0.96997 * 120.00209 * 0.02562 * 12 10 9 35 35 H 0.97007 * 119.99774 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.47482 * 269.99928 * 22 21 8 37 37 H 1.09004 * 109.46930 * 30.00328 * 22 21 8 38 38 H 1.09001 * 109.47088 * 149.99699 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8926 1.4370 6 6 3.3777 1.3788 -0.6005 7 6 3.9768 2.4285 -1.1943 8 7 5.2147 2.0033 -1.5951 9 6 6.2263 2.8041 -2.2889 10 6 6.1092 2.5834 -3.7751 11 8 5.2635 1.8316 -4.2117 12 7 6.9435 3.2222 -4.6190 13 6 6.8366 3.0219 -5.9711 14 1 6.0842 2.3518 -6.3598 15 6 7.6972 3.6801 -6.8412 16 7 8.6131 4.4950 -6.3680 17 14 7.5520 3.4066 -8.6833 18 1 6.4491 2.4503 -8.9563 19 1 7.2630 4.6994 -9.3544 20 1 8.8279 2.8530 -9.2036 21 6 5.3291 0.7079 -1.2315 22 6 6.5309 -0.1690 -1.4719 23 7 4.2270 0.3414 -0.6364 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8305 -0.5262 0.7814 28 1 1.0611 1.8872 1.8712 29 1 2.7165 1.2517 2.0265 30 1 2.4518 2.9100 1.4371 31 1 3.5607 3.4161 -1.3285 32 1 6.0708 3.8594 -2.0649 33 1 7.2194 2.5042 -1.9542 34 1 7.6196 3.8238 -4.2699 35 1 9.2136 4.9549 -6.9755 36 1 6.4289 -0.6692 -2.4350 37 1 7.4327 0.4432 -1.4741 38 1 6.6003 -0.9154 -0.6805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310272817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:18 Heat of formation + Delta-G solvation = 22.879722 kcal Electronic energy + Delta-G solvation = -20026.170187 eV Core-core repulsion = 16904.636965 eV Total energy + Delta-G solvation = -3121.533222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71570 -38.28129 -36.83389 -34.21472 -33.19436 -31.64364 -31.39073 -30.00966 -27.74905 -26.33078 -25.19066 -24.49928 -22.27661 -20.30768 -19.80122 -18.97221 -18.05433 -16.53361 -16.40654 -15.45783 -14.87982 -14.77736 -14.49356 -14.28826 -14.08202 -13.84199 -13.44202 -12.92334 -12.87949 -12.67377 -12.46804 -12.27865 -12.11727 -11.83491 -11.76272 -11.65770 -11.45258 -11.15918 -11.12645 -10.43616 -10.35891 -9.67785 -9.45536 -9.36659 -8.45047 -8.27980 -8.14176 -7.72265 -6.56375 -3.97908 2.45688 3.07017 3.18381 3.21022 3.28711 3.52435 3.64362 4.07637 4.37059 4.72590 4.77150 4.98964 5.09822 5.17702 5.22410 5.31969 5.36312 5.38191 5.44571 5.46621 5.64424 5.75886 5.84904 5.87412 5.88975 6.01960 6.08603 6.18776 6.29192 6.77033 7.05016 7.26815 7.42472 7.52529 7.62855 7.88851 8.41620 8.62243 9.01783 9.32946 9.82795 10.60563 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.003938 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.486908 B = 7107.932155 C = 7351.451036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.675 5.675 3 C 0.174 3.826 4 H 0.083 0.917 5 C -0.174 4.174 6 C 0.009 3.991 7 C -0.049 4.049 8 N -0.426 5.426 9 C 0.091 3.909 10 C 0.418 3.582 11 O -0.575 6.575 12 N -0.553 5.553 13 C -0.302 4.302 14 H 0.105 0.895 15 C 0.026 3.974 16 N -0.897 5.897 17 Si 0.931 3.069 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.216 3.784 22 C -0.065 4.065 23 N -0.475 5.475 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.345 0.655 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.393 0.607 35 H 0.273 0.727 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 -2.000 13.604 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.305 5.305 3 C 0.062 3.938 4 H 0.101 0.899 5 C -0.233 4.233 6 C -0.121 4.121 7 C -0.183 4.183 8 N -0.107 5.107 9 C -0.037 4.037 10 C 0.202 3.798 11 O -0.458 6.458 12 N -0.189 5.189 13 C -0.431 4.431 14 H 0.123 0.877 15 C -0.176 4.176 16 N -0.538 5.538 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.046 4.046 22 C -0.123 4.123 23 N -0.194 5.194 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.164 0.836 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.182 0.818 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.227 0.773 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.728 -3.167 12.749 14.759 hybrid contribution 0.416 1.630 -0.320 1.713 sum -6.313 -1.536 12.429 14.025 Atomic orbital electron populations 1.22227 0.88406 1.01588 0.99940 1.60219 1.06441 1.13203 1.50637 1.19644 0.90360 0.89775 0.93981 0.89887 1.22465 1.01249 1.02192 0.97434 1.20165 0.96413 0.90065 1.05497 1.22126 0.87264 1.01293 1.07586 1.44716 1.13266 1.10762 1.41949 1.21624 0.91976 0.96690 0.93369 1.19894 0.86220 0.86631 0.87018 1.90619 1.37635 1.40184 1.77401 1.41815 1.30477 1.39999 1.06613 1.19773 1.17051 1.25734 0.80572 0.87725 1.25296 0.95465 0.95903 1.00983 1.69609 1.19400 1.28378 1.36374 0.85770 0.78447 0.78352 0.81656 1.19103 1.20592 1.20548 1.23095 0.97676 0.83174 1.00645 1.20114 0.91157 0.97532 1.03506 1.70024 1.00167 1.28426 1.20778 0.96489 0.91880 0.91679 0.83634 0.92852 0.92228 0.91950 0.81807 0.87673 0.87686 0.77302 0.91668 0.90031 0.91356 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.50 60.06 0.63 0.93 16 2 N -0.68 -9.11 6.44 -115.25 -0.74 -9.85 16 3 C 0.17 2.35 3.04 -68.87 -0.21 2.14 16 4 H 0.08 1.08 7.80 -51.93 -0.40 0.67 16 5 C -0.17 -1.87 9.14 37.16 0.34 -1.53 16 6 C 0.01 0.15 6.05 -82.85 -0.50 -0.35 16 7 C -0.05 -0.83 11.48 -16.56 -0.19 -1.02 16 8 N -0.43 -7.61 2.24 -115.19 -0.26 -7.87 16 9 C 0.09 1.51 6.37 -5.20 -0.03 1.48 16 10 C 0.42 9.47 7.85 -10.99 -0.09 9.38 16 11 O -0.57 -15.66 16.00 5.55 0.09 -15.57 16 12 N -0.55 -13.25 5.29 -10.96 -0.06 -13.31 16 13 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 14 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 16 N -0.90 -23.37 13.05 55.50 0.72 -22.64 16 17 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.22 3.94 7.89 -155.42 -1.23 2.72 16 22 C -0.06 -0.97 10.19 36.01 0.37 -0.60 16 23 N -0.47 -8.90 11.05 -7.07 -0.08 -8.98 16 24 H 0.02 0.15 7.44 -51.93 -0.39 -0.24 16 25 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.35 4.40 8.56 -39.29 -0.34 4.06 16 28 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.11 1.46 7.21 -51.93 -0.37 1.08 16 34 H 0.39 8.82 7.90 -40.82 -0.32 8.50 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 0.88 7.17 -51.93 -0.37 0.51 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -33.04 326.57 -7.05 -40.09 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.47 Total: 12.33 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.15 Total: 5.44 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.41 Total: -62.66 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.04 -7.05 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310272817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.968 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds