Wall clock time and date at job start Mon Mar 30 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99932 * 2 1 4 4 H 1.09002 * 109.47510 * 324.99665 * 3 2 1 5 5 C 1.52998 * 109.47357 * 85.00031 * 3 2 1 6 6 C 1.50707 * 109.46783 * 204.99968 * 3 2 1 7 7 C 1.34666 * 125.98580 * 154.98522 * 6 3 2 8 8 N 1.36888 * 106.81628 * 180.02562 * 7 6 3 9 9 C 1.46494 * 126.39835 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47195 * 264.99885 * 9 8 7 11 11 O 1.21286 * 119.99832 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99952 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99824 * 180.02562 * 12 10 9 14 14 H 1.07992 * 119.99886 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99655 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99687 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47070 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46650 * 119.99829 * 17 15 13 20 20 H 1.48493 * 109.47195 * 239.99896 * 17 15 13 21 21 C 1.35039 * 107.20370 * 359.97438 * 8 7 6 22 22 C 1.50700 * 125.65013 * 180.02562 * 21 8 7 23 23 N 1.30504 * 108.70033 * 359.97438 * 21 8 7 24 24 H 1.08997 * 109.47612 * 299.99851 * 1 2 3 25 25 H 1.09004 * 109.47066 * 60.00014 * 1 2 3 26 26 H 1.08996 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.00902 * 110.99534 * 123.95595 * 2 1 3 28 28 H 1.08999 * 109.46880 * 299.99949 * 5 3 2 29 29 H 1.09002 * 109.47109 * 59.99389 * 5 3 2 30 30 H 1.08998 * 109.47661 * 179.97438 * 5 3 2 31 31 H 1.08000 * 126.59547 * 0.02562 * 7 6 3 32 32 H 1.09000 * 109.47374 * 25.00142 * 9 8 7 33 33 H 1.09003 * 109.47322 * 144.99675 * 9 8 7 34 34 H 0.96997 * 120.00209 * 0.02562 * 12 10 9 35 35 H 0.97007 * 119.99774 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.47482 * 269.99928 * 22 21 8 37 37 H 1.09004 * 109.46930 * 30.00328 * 22 21 8 38 38 H 1.09001 * 109.47088 * 149.99699 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8926 1.4370 6 6 3.3777 1.3788 -0.6005 7 6 3.9768 2.4285 -1.1943 8 7 5.2147 2.0033 -1.5951 9 6 6.2263 2.8041 -2.2889 10 6 6.1092 2.5834 -3.7751 11 8 5.2635 1.8316 -4.2117 12 7 6.9435 3.2222 -4.6190 13 6 6.8366 3.0219 -5.9711 14 1 6.0842 2.3518 -6.3598 15 6 7.6972 3.6801 -6.8412 16 7 8.6131 4.4950 -6.3680 17 14 7.5520 3.4066 -8.6833 18 1 6.4491 2.4503 -8.9563 19 1 7.2630 4.6994 -9.3544 20 1 8.8279 2.8530 -9.2036 21 6 5.3291 0.7079 -1.2315 22 6 6.5309 -0.1690 -1.4719 23 7 4.2270 0.3414 -0.6364 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8305 -0.5262 0.7814 28 1 1.0611 1.8872 1.8712 29 1 2.7165 1.2517 2.0265 30 1 2.4518 2.9100 1.4371 31 1 3.5607 3.4161 -1.3285 32 1 6.0708 3.8594 -2.0649 33 1 7.2194 2.5042 -1.9542 34 1 7.6196 3.8238 -4.2699 35 1 9.2136 4.9549 -6.9755 36 1 6.4289 -0.6692 -2.4350 37 1 7.4327 0.4432 -1.4741 38 1 6.6003 -0.9154 -0.6805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310272817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:17 Heat of formation + Delta-G solvation = -0.876107 kcal Electronic energy + Delta-G solvation = -20027.200317 eV Core-core repulsion = 16904.636965 eV Total energy + Delta-G solvation = -3122.563352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.02239 -40.10396 -37.86644 -36.12528 -34.62310 -33.34586 -32.81646 -31.02089 -29.24559 -27.53348 -26.58508 -25.86242 -23.38289 -21.92134 -21.05729 -20.51465 -19.88335 -18.15779 -17.76336 -16.69852 -16.58962 -16.02435 -15.86359 -15.68016 -15.64669 -15.17040 -14.69532 -14.39289 -14.16894 -13.88554 -13.59428 -13.37481 -13.33960 -13.23391 -13.10767 -12.91909 -12.87460 -12.47891 -12.37580 -12.15519 -12.12075 -11.59760 -10.94364 -10.78530 -10.14553 -10.10121 -9.25834 -8.98855 -8.53563 -6.02716 1.10971 1.32281 1.41084 1.54004 1.88982 1.90974 2.23043 2.28068 3.10211 3.12150 3.39467 3.57753 3.90558 3.93646 4.11358 4.15104 4.28570 4.30105 4.38488 4.49382 4.59169 4.64791 4.71821 4.80267 4.94839 4.98610 5.06081 5.09995 5.25951 5.36072 5.48418 5.85483 5.90920 6.23155 6.33244 6.51058 6.57610 7.04567 7.30877 7.42720 7.98075 8.62923 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.003938 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.486908 B = 7107.932155 C = 7351.451036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.699 5.699 3 C 0.172 3.828 4 H 0.086 0.914 5 C -0.161 4.161 6 C -0.002 4.002 7 C -0.065 4.065 8 N -0.434 5.434 9 C 0.102 3.898 10 C 0.420 3.580 11 O -0.626 6.626 12 N -0.557 5.557 13 C -0.335 4.335 14 H 0.075 0.925 15 C -0.004 4.004 16 N -0.912 5.912 17 Si 0.989 3.011 18 H -0.277 1.277 19 H -0.269 1.269 20 H -0.268 1.268 21 C 0.195 3.805 22 C -0.063 4.063 23 N -0.498 5.498 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.346 0.654 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.187 0.813 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.401 0.599 35 H 0.280 0.720 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -1.166 14.466 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.329 5.329 3 C 0.061 3.939 4 H 0.104 0.896 5 C -0.220 4.220 6 C -0.132 4.132 7 C -0.198 4.198 8 N -0.115 5.115 9 C -0.025 4.025 10 C 0.207 3.793 11 O -0.513 6.513 12 N -0.194 5.194 13 C -0.465 4.465 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.552 5.552 17 Si 0.813 3.187 18 H -0.202 1.202 19 H -0.194 1.194 20 H -0.193 1.193 21 C -0.067 4.067 22 C -0.121 4.121 23 N -0.218 5.218 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.570 -2.308 13.637 15.312 hybrid contribution 0.321 1.336 -0.562 1.484 sum -6.249 -0.972 13.075 14.524 Atomic orbital electron populations 1.22237 0.86706 1.02374 1.00535 1.60174 1.08208 1.13399 1.51144 1.19734 0.88627 0.90116 0.95445 0.89600 1.22328 1.02273 1.02050 0.95383 1.20827 0.97569 0.89637 1.05211 1.22647 0.87190 1.02465 1.07529 1.44862 1.13776 1.10887 1.42020 1.21655 0.93590 0.98716 0.88506 1.20884 0.84387 0.84654 0.89404 1.90592 1.39475 1.42061 1.79131 1.41807 1.31115 1.40524 1.05982 1.19629 1.17629 1.26773 0.82455 0.90700 1.25969 0.94782 0.95260 1.04507 1.69645 1.19453 1.28331 1.37741 0.84923 0.78336 0.78342 0.77077 1.20222 1.19438 1.19345 1.23705 0.98471 0.83813 1.00723 1.20194 0.90975 0.97871 1.03043 1.70027 1.00828 1.29348 1.21587 0.94530 0.92476 0.90866 0.83496 0.90911 0.93024 0.91354 0.79611 0.84225 0.84315 0.76405 0.91010 0.91984 0.89297 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.50 127.69 1.34 1.94 16 2 N -0.70 -18.29 6.44 -518.54 -3.34 -21.63 16 3 C 0.17 4.47 3.04 44.17 0.13 4.60 16 4 H 0.09 2.14 7.80 -2.39 -0.02 2.12 16 5 C -0.16 -3.17 9.14 71.98 0.66 -2.51 16 6 C 0.00 -0.08 6.05 41.39 0.25 0.17 16 7 C -0.07 -2.15 11.48 83.08 0.95 -1.20 16 8 N -0.43 -14.99 2.24 -518.35 -1.16 -16.15 16 9 C 0.10 3.19 6.37 85.63 0.55 3.74 16 10 C 0.42 18.96 7.85 87.66 0.69 19.65 16 11 O -0.63 -34.85 16.00 -3.05 -0.05 -34.90 16 12 N -0.56 -26.74 5.29 -306.99 -1.62 -28.37 16 13 C -0.34 -18.37 9.68 84.04 0.81 -17.56 16 14 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 15 C 0.00 -0.21 5.50 84.93 0.47 0.26 16 16 N -0.91 -46.62 13.05 21.66 0.28 -46.34 16 17 Si 0.99 41.68 29.55 68.60 2.03 43.71 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 C 0.20 7.00 7.89 138.13 1.09 8.09 16 22 C -0.06 -1.82 10.19 71.24 0.73 -1.10 16 23 N -0.50 -18.56 11.05 -176.28 -1.95 -20.51 16 24 H 0.04 0.57 7.44 -2.39 -0.02 0.55 16 25 H 0.06 1.17 8.06 -2.38 -0.02 1.16 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.35 8.61 8.56 -89.69 -0.77 7.84 16 28 H 0.07 1.14 7.45 -2.39 -0.02 1.12 16 29 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.19 5.01 8.06 -2.91 -0.02 4.98 16 32 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.14 3.44 7.21 -2.39 -0.02 3.42 16 34 H 0.40 17.71 7.90 -92.71 -0.73 16.98 16 35 H 0.28 13.39 8.31 -92.70 -0.77 12.62 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 2.15 7.17 -2.39 -0.02 2.13 16 38 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -72.16 326.57 1.44 -70.72 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.42 Total: 37.38 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 7.67 Total: 16.09 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -7.79 Total: -132.99 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.05 Total: -34.90 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -72.16 1.44 -70.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310272817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.840 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds