Wall clock time and date at job start Mon Mar 30 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 C 1.50707 * 109.47013 * 119.99817 * 2 1 3 5 5 C 1.41372 * 126.80172 * 275.29380 * 4 2 1 6 6 C 1.35452 * 103.98573 * 180.09500 * 5 4 2 7 7 C 1.50706 * 126.77513 * 179.91280 * 6 5 4 8 8 N 1.46497 * 109.47174 * 89.70688 * 7 6 5 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 13 13 C 1.52998 * 109.47092 * 300.27576 * 11 9 8 14 14 C 1.50703 * 109.47148 * 180.28037 * 11 9 8 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00214 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99609 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00201 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46807 * 60.00091 * 18 16 14 20 20 H 1.48498 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47057 * 299.99983 * 18 16 14 22 22 O 1.34037 * 106.44595 * 359.64126 * 6 5 4 23 23 N 1.20922 * 111.56726 * 0.25037 * 22 6 5 24 24 H 1.08996 * 109.47058 * 300.00256 * 1 2 3 25 25 H 1.08997 * 109.46929 * 59.99929 * 1 2 3 26 26 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47577 * 239.99718 * 2 1 3 28 28 H 1.08998 * 109.47578 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46820 * 300.00160 * 3 2 1 30 30 H 1.09008 * 109.47098 * 59.99223 * 3 2 1 31 31 H 1.08001 * 128.01208 * 0.02562 * 5 4 2 32 32 H 1.08995 * 109.46956 * 329.70392 * 7 6 5 33 33 H 1.09001 * 109.46317 * 209.70839 * 7 6 5 34 34 H 0.97000 * 120.00580 * 0.02562 * 8 7 6 35 35 H 1.09006 * 109.47458 * 299.99989 * 13 11 9 36 36 H 1.09004 * 109.47239 * 60.00118 * 13 11 9 37 37 H 1.09005 * 109.47323 * 180.02562 * 13 11 9 38 38 H 0.97006 * 119.99301 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.2162 -0.1509 2.5157 6 6 2.6801 -1.1837 3.2592 7 6 3.0496 -1.1496 4.7199 8 7 1.8718 -1.4720 5.5292 9 6 1.9656 -1.5020 6.8733 10 8 3.0248 -1.2616 7.4129 11 6 0.7525 -1.8276 7.7062 12 1 0.3917 -2.8234 7.4489 13 6 -0.3466 -0.7998 7.4299 14 6 1.1209 -1.7886 9.1670 15 1 2.1323 -1.5521 9.4627 16 6 0.1667 -2.0548 10.1259 17 7 -1.0649 -2.3432 9.7657 18 14 0.6234 -2.0072 11.9366 19 1 1.1159 -0.6508 12.2873 20 1 -0.5719 -2.3279 12.7572 21 1 1.6896 -3.0056 12.2045 22 8 2.7399 -2.2436 2.4408 23 7 2.3776 -1.9622 1.3220 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0309 0.8652 2.8315 32 1 3.4082 -0.1540 4.9807 33 1 3.8346 -1.8808 4.9131 34 1 1.0247 -1.6647 5.0977 35 1 0.0141 0.1962 7.6872 36 1 -0.6131 -0.8279 6.3733 37 1 -1.2239 -1.0350 8.0326 38 1 -1.7363 -2.5302 10.4405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597242736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:26 Heat of formation + Delta-G solvation = 3.989489 kcal Electronic energy + Delta-G solvation = -19805.532716 eV Core-core repulsion = 16650.887601 eV Total energy + Delta-G solvation = -3154.645115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.03443 -38.88661 -36.74607 -34.93682 -33.75852 -32.46543 -31.70850 -30.33479 -27.54734 -26.51350 -25.14133 -24.24691 -22.55909 -22.00822 -19.94724 -19.45970 -17.62654 -17.42803 -16.33514 -16.07620 -15.26892 -15.04062 -14.81444 -14.55156 -14.36009 -13.91883 -13.58976 -13.11944 -12.96267 -12.68907 -12.49655 -12.20255 -11.84655 -11.65450 -11.60040 -11.48192 -11.02875 -11.01567 -10.76161 -10.70613 -10.27892 -10.16433 -9.98392 -9.71045 -9.00551 -8.66780 -8.61148 -8.34368 -6.03985 -4.07527 1.27186 2.08195 2.93764 3.36278 3.38856 3.44137 3.64072 3.86049 3.93524 4.24398 4.47259 4.68920 4.77902 4.87046 4.96032 5.15315 5.27722 5.29356 5.32810 5.48164 5.49335 5.58782 5.67752 5.70108 5.88914 5.91520 5.96311 6.17904 6.59481 6.80032 6.83750 6.92150 7.44913 7.73349 7.94849 8.09520 8.15164 8.37147 9.00896 9.13043 9.58040 11.03564 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036218 B = 0.003609 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.908548 B = 7756.926918 C = 8068.878079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.144 4.144 4 C 0.021 3.979 5 C -0.211 4.211 6 C -0.037 4.037 7 C 0.201 3.799 8 N -0.745 5.745 9 C 0.523 3.477 10 O -0.542 6.542 11 C 0.031 3.969 12 H 0.054 0.946 13 C -0.132 4.132 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 O 0.105 5.895 23 N -0.363 5.363 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.172 0.828 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.400 0.600 35 H 0.032 0.968 36 H 0.012 0.988 37 H 0.094 0.906 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 6.025 -18.678 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.202 4.202 4 C -0.138 4.138 5 C -0.233 4.233 6 C -0.101 4.101 7 C 0.076 3.924 8 N -0.401 5.401 9 C 0.313 3.687 10 O -0.417 6.417 11 C 0.010 3.990 12 H 0.072 0.928 13 C -0.190 4.190 14 C -0.541 4.541 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 O 0.038 5.962 23 N -0.066 5.066 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.190 0.810 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.234 0.766 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.112 0.888 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.281 5.119 -19.042 19.989 hybrid contribution -0.327 0.642 1.020 1.249 sum 2.954 5.761 -18.022 19.150 Atomic orbital electron populations 1.21829 0.93301 1.02507 1.02557 1.19509 0.96208 0.95385 0.92489 1.21839 1.01406 0.94340 1.02629 1.23579 1.02226 0.90637 0.97344 1.22446 1.06604 1.01853 0.92390 1.24594 1.02673 0.86898 0.95891 1.19532 0.90444 1.03384 0.79074 1.46385 1.11864 1.74818 1.07059 1.22067 0.92333 0.73984 0.80270 1.90547 1.31190 1.48304 1.71699 1.18885 0.88387 0.97118 0.94650 0.92810 1.21751 1.01993 0.97967 0.97328 1.21102 0.97176 1.47007 0.88835 0.90758 1.24952 0.94879 0.95018 0.99367 1.69866 1.02099 1.47947 1.33678 0.86493 0.77644 0.78721 0.84207 1.20181 1.21393 1.20160 1.84854 1.62446 1.34819 1.14131 1.73851 1.16034 1.17008 0.99709 0.91959 0.91609 0.92337 0.89601 0.92285 0.91626 0.91894 0.81007 0.88589 0.89613 0.76630 0.94930 0.96943 0.88786 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.79 16 2 C -0.02 -0.14 3.38 -91.77 -0.31 -0.46 16 3 C -0.14 -0.99 8.82 37.16 0.33 -0.66 16 4 C 0.02 0.24 6.21 -82.10 -0.51 -0.27 16 5 C -0.21 -2.34 10.28 -39.38 -0.40 -2.74 16 6 C -0.04 -0.46 6.86 -35.30 -0.24 -0.70 16 7 C 0.20 2.76 6.24 -5.19 -0.03 2.72 16 8 N -0.74 -12.36 5.44 -61.47 -0.33 -12.70 16 9 C 0.52 11.46 7.15 -10.98 -0.08 11.39 16 10 O -0.54 -13.55 15.46 5.55 0.09 -13.46 16 11 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 12 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.13 -2.96 8.86 37.16 0.33 -2.64 16 14 C -0.50 -14.06 8.37 -34.44 -0.29 -14.35 16 15 H 0.07 2.18 6.75 -52.49 -0.35 1.83 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -24.94 11.32 55.43 0.63 -24.32 16 18 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 O 0.10 1.46 11.20 17.19 0.19 1.65 16 23 N -0.36 -5.02 12.07 33.42 0.40 -4.61 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 7.50 -51.92 -0.39 0.03 16 31 H 0.17 1.55 7.67 -52.49 -0.40 1.15 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.40 6.00 7.87 -40.82 -0.32 5.68 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 37 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -30.91 322.77 -5.93 -36.83 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.54 Total: 1.61 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.21 Total: -6.47 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.70 Total: -41.63 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.28 Total: -11.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.91 -5.93 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597242736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.824 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds