Wall clock time and date at job start Mon Mar 30 2020 04:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 C 1.50707 * 109.47013 * 119.99817 * 2 1 3 5 5 C 1.41372 * 126.80172 * 275.29380 * 4 2 1 6 6 C 1.35452 * 103.98573 * 180.09500 * 5 4 2 7 7 C 1.50706 * 126.77513 * 179.91280 * 6 5 4 8 8 N 1.46497 * 109.47174 * 89.70688 * 7 6 5 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 13 13 C 1.52998 * 109.47092 * 300.27576 * 11 9 8 14 14 C 1.50703 * 109.47148 * 180.28037 * 11 9 8 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00214 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99609 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00201 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46807 * 60.00091 * 18 16 14 20 20 H 1.48498 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47057 * 299.99983 * 18 16 14 22 22 O 1.34037 * 106.44595 * 359.64126 * 6 5 4 23 23 N 1.20922 * 111.56726 * 0.25037 * 22 6 5 24 24 H 1.08996 * 109.47058 * 300.00256 * 1 2 3 25 25 H 1.08997 * 109.46929 * 59.99929 * 1 2 3 26 26 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47577 * 239.99718 * 2 1 3 28 28 H 1.08998 * 109.47578 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46820 * 300.00160 * 3 2 1 30 30 H 1.09008 * 109.47098 * 59.99223 * 3 2 1 31 31 H 1.08001 * 128.01208 * 0.02562 * 5 4 2 32 32 H 1.08995 * 109.46956 * 329.70392 * 7 6 5 33 33 H 1.09001 * 109.46317 * 209.70839 * 7 6 5 34 34 H 0.97000 * 120.00580 * 0.02562 * 8 7 6 35 35 H 1.09006 * 109.47458 * 299.99989 * 13 11 9 36 36 H 1.09004 * 109.47239 * 60.00118 * 13 11 9 37 37 H 1.09005 * 109.47323 * 180.02562 * 13 11 9 38 38 H 0.97006 * 119.99301 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.2162 -0.1509 2.5157 6 6 2.6801 -1.1837 3.2592 7 6 3.0496 -1.1496 4.7199 8 7 1.8718 -1.4720 5.5292 9 6 1.9656 -1.5020 6.8733 10 8 3.0248 -1.2616 7.4129 11 6 0.7525 -1.8276 7.7062 12 1 0.3917 -2.8234 7.4489 13 6 -0.3466 -0.7998 7.4299 14 6 1.1209 -1.7886 9.1670 15 1 2.1323 -1.5521 9.4627 16 6 0.1667 -2.0548 10.1259 17 7 -1.0649 -2.3432 9.7657 18 14 0.6234 -2.0072 11.9366 19 1 1.1159 -0.6508 12.2873 20 1 -0.5719 -2.3279 12.7572 21 1 1.6896 -3.0056 12.2045 22 8 2.7399 -2.2436 2.4408 23 7 2.3776 -1.9622 1.3220 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0309 0.8652 2.8315 32 1 3.4082 -0.1540 4.9807 33 1 3.8346 -1.8808 4.9131 34 1 1.0247 -1.6647 5.0977 35 1 0.0141 0.1962 7.6872 36 1 -0.6131 -0.8279 6.3733 37 1 -1.2239 -1.0350 8.0326 38 1 -1.7363 -2.5302 10.4405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597242736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:24 Heat of formation + Delta-G solvation = -15.505581 kcal Electronic energy + Delta-G solvation = -19806.378086 eV Core-core repulsion = 16650.887601 eV Total energy + Delta-G solvation = -3155.490485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -46.00258 -40.57866 -37.48637 -36.34006 -35.73976 -33.46843 -32.96947 -32.07670 -28.17878 -27.73685 -27.13845 -25.08668 -24.25084 -22.98712 -21.25934 -20.68069 -18.69458 -18.61208 -18.22713 -17.52504 -16.81294 -16.41574 -16.22184 -15.83487 -15.30063 -14.87263 -14.69813 -14.58263 -14.34943 -14.09590 -13.52388 -13.36338 -13.01940 -12.94585 -12.70821 -12.57886 -12.54782 -12.39900 -12.23603 -12.17447 -11.99171 -11.75193 -11.04669 -11.02868 -10.86020 -10.52510 -10.22304 -10.09060 -8.13145 -6.23672 0.26804 1.18598 1.44007 1.45161 1.53630 1.88257 1.94352 2.40664 2.60087 3.07702 3.16865 3.32591 3.91382 4.02772 4.11422 4.17085 4.25459 4.34822 4.52665 4.63769 4.65893 4.77788 4.79451 4.91169 4.96587 4.96883 5.01278 5.04133 5.17256 5.32141 5.37301 5.41835 5.51562 5.76486 5.95331 6.22260 6.65774 6.86012 7.19280 7.39555 7.49700 8.92416 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036218 B = 0.003609 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.908548 B = 7756.926918 C = 8068.878079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.023 3.977 5 C -0.197 4.197 6 C -0.044 4.044 7 C 0.205 3.795 8 N -0.725 5.725 9 C 0.529 3.471 10 O -0.578 6.578 11 C 0.023 3.977 12 H 0.040 0.960 13 C -0.119 4.119 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.277 1.277 22 O 0.085 5.915 23 N -0.388 5.388 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.410 0.590 35 H 0.027 0.973 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 7.345 -19.857 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.199 4.199 4 C -0.135 4.135 5 C -0.218 4.218 6 C -0.108 4.108 7 C 0.081 3.919 8 N -0.380 5.380 9 C 0.318 3.682 10 O -0.457 6.457 11 C 0.002 3.998 12 H 0.058 0.942 13 C -0.177 4.177 14 C -0.568 4.568 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.200 1.200 20 H -0.202 1.202 21 H -0.202 1.202 22 O 0.020 5.980 23 N -0.094 5.094 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.214 0.786 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.906 6.431 -20.255 21.450 hybrid contribution -0.228 0.229 1.271 1.311 sum 2.678 6.660 -18.985 20.296 Atomic orbital electron populations 1.21822 0.92570 1.01894 1.03642 1.19689 0.96728 0.96267 0.91121 1.21838 1.01200 0.93003 1.03827 1.24139 1.00837 0.90031 0.98530 1.22772 1.04815 1.02456 0.91775 1.24382 1.03851 0.87308 0.95251 1.19569 0.88930 1.04001 0.79427 1.46041 1.13385 1.72978 1.05594 1.21478 0.90882 0.74057 0.81782 1.90528 1.31989 1.50331 1.72878 1.18825 0.90188 0.97044 0.93750 0.94172 1.21555 1.00058 0.96820 0.99292 1.21285 0.96400 1.47854 0.91252 0.92970 1.25600 0.94877 0.94611 1.02907 1.69954 1.02526 1.47894 1.34750 0.85651 0.77632 0.78601 0.80004 1.19963 1.20191 1.20216 1.84830 1.63227 1.35492 1.14423 1.73864 1.17308 1.18415 0.99820 0.91907 0.89522 0.93785 0.89657 0.92610 0.89842 0.91351 0.78571 0.87258 0.89832 0.75454 0.95397 0.93106 0.91241 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.18 71.98 0.66 -1.24 16 2 C -0.02 -0.28 3.38 -11.54 -0.04 -0.32 16 3 C -0.14 -1.50 8.82 71.98 0.63 -0.87 16 4 C 0.02 0.50 6.21 43.58 0.27 0.77 16 5 C -0.20 -3.87 10.28 22.40 0.23 -3.64 16 6 C -0.04 -1.04 6.86 25.04 0.17 -0.87 16 7 C 0.20 5.34 6.24 85.64 0.53 5.88 16 8 N -0.73 -23.16 5.44 -466.79 -2.54 -25.69 16 9 C 0.53 23.05 7.15 87.66 0.63 23.68 16 10 O -0.58 -29.14 15.46 -3.04 -0.05 -29.19 16 11 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 12 H 0.04 2.06 8.14 -2.39 -0.02 2.05 16 13 C -0.12 -5.25 8.86 71.98 0.64 -4.61 16 14 C -0.53 -30.10 8.37 25.60 0.21 -29.88 16 15 H 0.05 3.14 6.75 -2.91 -0.02 3.13 16 16 C 0.02 1.06 5.30 84.65 0.45 1.51 16 17 N -0.91 -50.80 11.32 21.45 0.24 -50.55 16 18 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 O 0.08 2.30 11.20 71.66 0.80 3.10 16 23 N -0.39 -10.38 12.07 -49.56 -0.60 -10.98 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.66 7.50 -2.38 -0.02 0.65 16 31 H 0.20 2.81 7.67 -2.91 -0.02 2.79 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.41 11.55 7.87 -92.71 -0.73 10.82 16 35 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.05 1.79 7.56 -2.38 -0.02 1.77 16 37 H 0.07 3.43 6.07 -2.38 -0.01 3.42 16 38 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -66.78 322.77 4.58 -62.20 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.33 Total: 13.19 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 4.36 Total: -8.49 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.89 Total: -87.23 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.76 Total: -26.08 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.78 4.58 -62.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597242736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.692 kcal (2) G-P(sol) polarization free energy of solvation -66.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds