Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47398 * 2 1 4 4 C 1.50697 * 109.46815 * 120.00382 * 2 1 3 5 5 H 1.07998 * 120.00514 * 119.99898 * 4 2 1 6 6 C 1.37877 * 120.00189 * 299.99330 * 4 2 1 7 7 N 1.31516 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00438 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47347 * 120.00364 * 8 6 4 11 11 H 1.48501 * 109.47435 * 240.00275 * 8 6 4 12 12 N 1.46501 * 109.46940 * 239.99695 * 2 1 3 13 13 N 1.40153 * 120.06362 * 300.00525 * 12 2 1 14 14 C 1.34806 * 120.34305 * 204.22580 * 13 12 2 15 15 O 1.21287 * 120.28436 * 177.52575 * 14 13 12 16 16 C 1.51280 * 119.43367 * 357.54093 * 14 13 12 17 17 H 1.09003 * 109.95950 * 204.16492 * 16 14 13 18 18 C 1.53116 * 108.29707 * 83.40973 * 16 14 13 19 19 C 1.52874 * 109.91545 * 183.71542 * 18 16 14 20 20 C 1.53091 * 109.14569 * 60.91162 * 19 18 16 21 21 C 1.52954 * 109.04016 * 298.79190 * 20 19 18 22 22 C 1.52275 * 110.16801 * 59.53385 * 21 20 19 23 23 H 1.09003 * 108.74596 * 182.83565 * 22 21 20 24 24 C 1.34835 * 119.92139 * 120.23331 * 12 2 1 25 25 O 1.21282 * 120.39239 * 356.86204 * 24 12 2 26 26 H 1.08998 * 109.47067 * 300.00467 * 1 2 3 27 27 H 1.09009 * 109.46658 * 59.99809 * 1 2 3 28 28 H 1.08996 * 109.47706 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00451 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.82960 * 24.50791 * 13 12 2 31 31 H 1.08994 * 109.39880 * 303.85297 * 18 16 14 32 32 H 1.08999 * 109.39596 * 63.58137 * 18 16 14 33 33 H 1.09004 * 109.52483 * 301.01231 * 19 18 16 34 34 H 1.08999 * 109.58127 * 180.84434 * 19 18 16 35 35 H 1.09001 * 109.54317 * 178.92658 * 20 19 18 36 36 H 1.09001 * 109.54545 * 58.66259 * 20 19 18 37 37 H 1.09000 * 109.35569 * 299.32573 * 21 20 19 38 38 H 1.09002 * 109.24332 * 179.67596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1482 -2.2859 3.6037 10 1 3.1471 -0.1860 4.8161 11 1 1.1676 -1.5867 4.8164 12 7 2.0183 -0.6907 -1.1962 13 7 1.6804 -2.0325 -1.4192 14 6 2.4626 -2.8123 -2.1921 15 8 2.1938 -3.9846 -2.3482 16 6 3.6789 -2.2127 -2.8628 17 1 3.9439 -2.7971 -3.7439 18 6 4.8319 -2.2118 -1.8553 19 6 6.0558 -1.5284 -2.4652 20 6 5.7029 -0.0786 -2.8074 21 6 4.5692 -0.0700 -3.8341 22 6 3.3445 -0.7774 -3.2698 23 1 2.5701 -0.8024 -4.0365 24 6 2.7973 -0.0353 -2.0803 25 8 3.0507 1.1401 -1.9216 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1609 3.4844 30 1 0.8774 -2.4008 -1.0188 31 1 4.5274 -1.6746 -0.9571 32 1 5.0842 -3.2392 -1.5929 33 1 6.3528 -2.0549 -3.3723 34 1 6.8776 -1.5441 -1.7493 35 1 6.5771 0.4206 -3.2254 36 1 5.3815 0.4412 -1.9048 37 1 4.8972 -0.5819 -4.7387 38 1 4.3113 0.9612 -4.0758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601936175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = -56.693318 kcal Electronic energy + Delta-G solvation = -21855.185758 eV Core-core repulsion = 18697.909240 eV Total energy + Delta-G solvation = -3157.276519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.05323 -38.40502 -37.27135 -35.83279 -33.72175 -31.48071 -30.84271 -30.65573 -28.64662 -25.40674 -24.03995 -23.58798 -21.72097 -21.10911 -20.05777 -18.32456 -17.31122 -16.93203 -16.04245 -15.91181 -15.05011 -14.59873 -14.57244 -14.35569 -14.06920 -13.75339 -13.56323 -12.94167 -12.73453 -12.26458 -12.15722 -11.97733 -11.83720 -11.29771 -11.24724 -11.09533 -10.94275 -10.73536 -10.54419 -10.46226 -10.38875 -10.16449 -10.08129 -9.52838 -9.35035 -9.05762 -8.60219 -7.50325 -6.23847 -4.33588 2.51268 2.61340 3.18196 3.21432 3.27346 3.31742 3.87203 4.27035 4.49557 4.66110 4.86275 4.94154 5.09041 5.16391 5.30570 5.39831 5.44109 5.52913 5.66294 5.88377 5.99236 6.08467 6.16616 6.21009 6.32563 6.35278 6.45498 6.55396 6.64902 6.75138 6.76242 7.27188 7.39102 7.54125 7.79696 7.96025 8.20121 8.37728 8.64395 8.89001 9.34680 10.80992 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.007350 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.455099 B = 3808.391133 C = 3857.942168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.260 3.740 3 H 0.084 0.916 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.392 5.392 13 N -0.499 5.499 14 C 0.518 3.482 15 O -0.546 6.546 16 C -0.093 4.093 17 H 0.114 0.886 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.094 4.094 22 C -0.108 4.108 23 H 0.098 0.902 24 C 0.518 3.482 25 O -0.528 6.528 26 H 0.101 0.899 27 H 0.018 0.982 28 H 0.029 0.971 29 H 0.266 0.734 30 H 0.423 0.577 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -3.144 -10.310 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.101 0.899 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.218 5.218 13 N -0.247 5.247 14 C 0.304 3.696 15 O -0.421 6.421 16 C -0.115 4.115 17 H 0.132 0.868 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.164 4.164 21 C -0.132 4.132 22 C -0.130 4.130 23 H 0.116 0.884 24 C 0.304 3.696 25 O -0.403 6.403 26 H 0.119 0.881 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.267 0.733 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.691 -2.925 -10.219 12.057 hybrid contribution -0.261 -0.691 1.199 1.408 sum 5.429 -3.616 -9.021 11.132 Atomic orbital electron populations 1.22149 0.97618 0.99682 1.01673 1.19412 0.91609 0.94057 0.78720 0.89893 1.21293 1.32587 1.13377 0.89905 0.91885 1.24874 0.94669 0.94876 0.99070 1.69862 1.35881 1.22401 1.24102 0.86387 0.78733 0.79622 0.82416 1.19705 1.20745 1.20786 1.48347 1.50620 0.98484 1.24330 1.45240 1.26905 1.01724 1.50790 1.20762 0.83990 0.85611 0.79244 1.90747 1.72345 1.15087 1.63963 1.21527 0.94036 0.95652 1.00269 0.86832 1.21542 0.93758 1.01948 0.98182 1.21499 0.96985 0.96007 1.00633 1.21625 0.97882 0.96527 1.00337 1.21127 0.93110 1.00977 0.97948 1.21196 1.00122 0.94299 0.97391 0.88422 1.20161 0.78907 0.87200 0.83320 1.90704 1.59465 1.14979 1.75151 0.88059 0.96323 0.95166 0.92432 0.73337 0.90379 0.91024 0.91872 0.91531 0.91732 0.90583 0.91263 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.07 37.16 0.34 -3.06 16 2 C 0.26 6.18 2.71 -69.08 -0.19 5.99 16 3 H 0.08 2.24 6.92 -51.93 -0.36 1.88 16 4 C -0.53 -13.63 8.58 -34.44 -0.30 -13.92 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.68 11.32 55.43 0.63 -23.06 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.39 -7.95 3.10 -54.99 -0.17 -8.12 16 13 N -0.50 -9.18 5.87 31.38 0.18 -9.00 16 14 C 0.52 9.01 6.99 -10.69 -0.07 8.93 16 15 O -0.55 -10.68 17.95 5.55 0.10 -10.58 16 16 C -0.09 -1.34 2.64 -91.48 -0.24 -1.58 16 17 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 18 C -0.12 -1.68 4.89 -26.74 -0.13 -1.81 16 19 C -0.11 -1.35 5.92 -26.75 -0.16 -1.51 16 20 C -0.13 -1.63 5.74 -26.71 -0.15 -1.78 16 21 C -0.09 -1.17 5.07 -27.12 -0.14 -1.30 16 22 C -0.11 -1.58 2.45 -92.29 -0.23 -1.80 16 23 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 24 C 0.52 9.93 5.80 -11.06 -0.06 9.87 16 25 O -0.53 -11.64 14.64 5.56 0.08 -11.56 16 26 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.03 0.62 7.18 -51.93 -0.37 0.24 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.42 7.62 7.84 -182.56 -1.43 6.19 16 31 H 0.08 1.38 7.40 -51.93 -0.38 0.99 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.23 6.86 -51.93 -0.36 0.87 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -28.73 300.26 -7.65 -36.38 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.55 Total: 6.25 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.43 Total: -0.29 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.64 Total: -40.17 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.18 Total: -22.15 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.73 -7.65 -36.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601936175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.312 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds