Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47398 * 2 1 4 4 C 1.50697 * 109.46815 * 120.00382 * 2 1 3 5 5 H 1.07998 * 120.00514 * 119.99898 * 4 2 1 6 6 C 1.37877 * 120.00189 * 299.99330 * 4 2 1 7 7 N 1.31516 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00438 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47347 * 120.00364 * 8 6 4 11 11 H 1.48501 * 109.47435 * 240.00275 * 8 6 4 12 12 N 1.46501 * 109.46940 * 239.99695 * 2 1 3 13 13 N 1.40153 * 120.06362 * 300.00525 * 12 2 1 14 14 C 1.34806 * 120.34305 * 204.22580 * 13 12 2 15 15 O 1.21287 * 120.28436 * 177.52575 * 14 13 12 16 16 C 1.51280 * 119.43367 * 357.54093 * 14 13 12 17 17 H 1.09003 * 109.95950 * 204.16492 * 16 14 13 18 18 C 1.53116 * 108.29707 * 83.40973 * 16 14 13 19 19 C 1.52874 * 109.91545 * 183.71542 * 18 16 14 20 20 C 1.53091 * 109.14569 * 60.91162 * 19 18 16 21 21 C 1.52954 * 109.04016 * 298.79190 * 20 19 18 22 22 C 1.52275 * 110.16801 * 59.53385 * 21 20 19 23 23 H 1.09003 * 108.74596 * 182.83565 * 22 21 20 24 24 C 1.34835 * 119.92139 * 120.23331 * 12 2 1 25 25 O 1.21282 * 120.39239 * 356.86204 * 24 12 2 26 26 H 1.08998 * 109.47067 * 300.00467 * 1 2 3 27 27 H 1.09009 * 109.46658 * 59.99809 * 1 2 3 28 28 H 1.08996 * 109.47706 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00451 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.82960 * 24.50791 * 13 12 2 31 31 H 1.08994 * 109.39880 * 303.85297 * 18 16 14 32 32 H 1.08999 * 109.39596 * 63.58137 * 18 16 14 33 33 H 1.09004 * 109.52483 * 301.01231 * 19 18 16 34 34 H 1.08999 * 109.58127 * 180.84434 * 19 18 16 35 35 H 1.09001 * 109.54317 * 178.92658 * 20 19 18 36 36 H 1.09001 * 109.54545 * 58.66259 * 20 19 18 37 37 H 1.09000 * 109.35569 * 299.32573 * 21 20 19 38 38 H 1.09002 * 109.24332 * 179.67596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1482 -2.2859 3.6037 10 1 3.1471 -0.1860 4.8161 11 1 1.1676 -1.5867 4.8164 12 7 2.0183 -0.6907 -1.1962 13 7 1.6804 -2.0325 -1.4192 14 6 2.4626 -2.8123 -2.1921 15 8 2.1938 -3.9846 -2.3482 16 6 3.6789 -2.2127 -2.8628 17 1 3.9439 -2.7971 -3.7439 18 6 4.8319 -2.2118 -1.8553 19 6 6.0558 -1.5284 -2.4652 20 6 5.7029 -0.0786 -2.8074 21 6 4.5692 -0.0700 -3.8341 22 6 3.3445 -0.7774 -3.2698 23 1 2.5701 -0.8024 -4.0365 24 6 2.7973 -0.0353 -2.0803 25 8 3.0507 1.1401 -1.9216 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1609 3.4844 30 1 0.8774 -2.4008 -1.0188 31 1 4.5274 -1.6746 -0.9571 32 1 5.0842 -3.2392 -1.5929 33 1 6.3528 -2.0549 -3.3723 34 1 6.8776 -1.5441 -1.7493 35 1 6.5771 0.4206 -3.2254 36 1 5.3815 0.4412 -1.9048 37 1 4.8972 -0.5819 -4.7387 38 1 4.3113 0.9612 -4.0758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601936175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = -75.073845 kcal Electronic energy + Delta-G solvation = -21855.982798 eV Core-core repulsion = 18697.909240 eV Total energy + Delta-G solvation = -3158.073558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.44205 -39.91019 -38.58540 -37.41941 -35.54567 -33.04768 -32.08168 -31.92091 -30.31659 -27.39488 -25.32266 -24.87074 -23.02271 -22.73922 -21.28807 -19.79772 -18.77150 -18.57949 -17.80428 -17.31862 -16.70497 -16.00763 -15.93321 -15.88249 -15.31581 -15.27444 -14.95486 -14.54740 -14.02032 -13.75818 -13.42035 -13.32367 -13.09295 -13.06047 -12.97621 -12.81315 -12.35718 -12.27464 -12.22961 -11.94844 -11.81313 -11.57557 -11.20642 -11.11700 -10.81747 -10.70980 -10.54239 -9.14128 -8.23636 -6.40610 0.97117 1.18197 1.35763 1.39016 1.49155 1.74149 2.32550 2.54591 3.04761 3.27714 3.51654 3.71235 3.80226 4.11850 4.24950 4.31139 4.38554 4.49217 4.50997 4.61183 4.77853 4.84564 4.89050 4.94287 5.01456 5.12310 5.16739 5.17732 5.28411 5.38771 5.42235 5.55855 5.59344 5.73350 5.88560 6.02769 6.64423 6.71941 6.81916 7.24394 7.38997 8.79970 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.007350 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.455099 B = 3808.391133 C = 3857.942168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.266 3.734 3 H 0.042 0.958 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.398 5.398 13 N -0.499 5.499 14 C 0.518 3.482 15 O -0.565 6.565 16 C -0.083 4.083 17 H 0.154 0.846 18 C -0.116 4.116 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.100 4.100 23 H 0.122 0.878 24 C 0.509 3.491 25 O -0.565 6.565 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.421 0.579 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.029 0.971 37 H 0.114 0.886 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 -4.728 -12.179 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.060 0.940 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.223 5.223 13 N -0.247 5.247 14 C 0.306 3.694 15 O -0.442 6.442 16 C -0.104 4.104 17 H 0.172 0.828 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.128 4.128 22 C -0.121 4.121 23 H 0.140 0.860 24 C 0.298 3.702 25 O -0.442 6.442 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.132 0.868 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.003 -4.517 -12.109 14.699 hybrid contribution -0.663 -0.179 1.789 1.916 sum 6.340 -4.696 -10.320 12.990 Atomic orbital electron populations 1.21954 0.96530 1.00309 1.01074 1.18964 0.92322 0.92293 0.79823 0.94048 1.21432 1.32473 1.13088 0.90978 0.92843 1.25586 0.94874 0.95513 1.01603 1.69969 1.36620 1.23373 1.24736 0.85480 0.78304 0.78447 0.79246 1.19758 1.20600 1.19960 1.48120 1.51017 0.99420 1.23769 1.45306 1.27292 1.00904 1.51233 1.21369 0.84302 0.85198 0.78554 1.90740 1.72908 1.15883 1.64646 1.21645 0.92088 0.95531 1.01182 0.82838 1.21544 0.95039 1.02021 0.96839 1.21491 0.95578 0.95105 1.02096 1.21624 0.99026 0.97105 0.98756 1.21209 0.91653 1.00800 0.99136 1.21306 1.01726 0.93842 0.95252 0.86043 1.21169 0.77840 0.87074 0.84113 1.90678 1.60389 1.16922 1.76184 0.90344 0.95131 0.93812 0.92265 0.73580 0.94731 0.90333 0.88236 0.91188 0.89390 0.95170 0.86756 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 9.07 71.98 0.65 -5.74 16 2 C 0.27 13.15 2.71 44.24 0.12 13.27 16 3 H 0.04 2.39 6.92 -2.39 -0.02 2.38 16 4 C -0.54 -28.55 8.58 25.60 0.22 -28.33 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.03 1.34 5.30 84.65 0.45 1.78 16 7 N -0.91 -49.95 11.32 21.45 0.24 -49.71 16 8 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.40 -16.51 3.10 -446.25 -1.38 -17.89 16 13 N -0.50 -18.30 5.87 -173.01 -1.02 -19.32 16 14 C 0.52 17.20 6.99 87.84 0.61 17.81 16 15 O -0.56 -21.07 17.95 -3.05 -0.05 -21.12 16 16 C -0.08 -2.14 2.64 -11.35 -0.03 -2.17 16 17 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 18 C -0.12 -3.14 4.89 30.59 0.15 -2.99 16 19 C -0.11 -2.16 5.92 30.58 0.18 -1.98 16 20 C -0.13 -3.02 5.74 30.61 0.18 -2.84 16 21 C -0.09 -1.95 5.07 30.34 0.15 -1.80 16 22 C -0.10 -2.67 2.45 -11.88 -0.03 -2.70 16 23 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 24 C 0.51 19.73 5.80 87.58 0.51 20.24 16 25 O -0.56 -25.88 14.64 -3.04 -0.04 -25.92 16 26 H 0.08 3.97 6.07 -2.39 -0.01 3.95 16 27 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.04 1.82 7.18 -2.39 -0.02 1.80 16 29 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.42 15.22 7.84 -213.29 -1.67 13.55 16 31 H 0.03 1.23 7.40 -2.39 -0.02 1.21 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.03 0.98 6.86 -2.39 -0.02 0.97 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.64 7.82 -2.39 -0.02 1.62 16 Total: -1.00 -64.96 300.26 2.33 -62.63 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.60 Total: 22.20 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 3.16 Total: 4.56 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.16 Total: -86.92 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.10 Total: -47.04 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.96 2.33 -62.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601936175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.443 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds