Wall clock time and date at job start Mon Mar 30 2020 05:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47277 * 32.34809 * 3 2 1 5 5 C 1.37090 * 120.00544 * 271.80996 * 4 3 2 6 6 H 1.08001 * 120.00695 * 188.02435 * 5 4 3 7 7 C 1.38960 * 119.99978 * 8.01875 * 5 4 3 8 8 N 1.31412 * 119.99465 * 24.23696 * 7 5 4 9 9 Si 1.86799 * 120.00042 * 204.23815 * 7 5 4 10 10 H 1.48499 * 109.46964 * 89.99951 * 9 7 5 11 11 H 1.48501 * 109.46706 * 209.99763 * 9 7 5 12 12 H 1.48498 * 109.47212 * 329.99828 * 9 7 5 13 13 C 1.34783 * 119.99924 * 91.80443 * 4 3 2 14 14 O 1.21289 * 120.00399 * 180.02562 * 13 4 3 15 15 C 1.50707 * 119.99394 * 0.02562 * 13 4 3 16 16 H 1.08997 * 110.90329 * 56.13991 * 15 13 4 17 17 C 1.55112 * 111.14788 * 292.24128 * 15 13 4 18 18 N 1.47850 * 104.90378 * 205.05498 * 17 15 13 19 19 C 1.47447 * 108.56552 * 23.97176 * 18 17 15 20 20 C 1.54315 * 107.23458 * 359.00977 * 19 18 17 21 21 H 1.09007 * 110.70086 * 96.27729 * 20 19 18 22 22 O 1.42903 * 110.70838 * 219.32958 * 20 19 18 23 23 C 1.42888 * 114.00301 * 266.19776 * 22 20 19 24 24 C 1.53001 * 109.47372 * 179.97438 * 23 22 20 25 25 H 4.40642 * 5.51412 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47182 * 272.35264 * 3 2 1 27 27 H 1.08998 * 109.47026 * 152.35300 * 3 2 1 28 28 H 0.96998 * 119.99714 * 180.02562 * 8 7 5 29 29 H 1.08994 * 110.42541 * 86.13924 * 17 15 13 30 30 H 1.08996 * 110.21500 * 323.86017 * 17 15 13 31 31 H 1.00896 * 111.00044 * 146.24200 * 18 17 15 32 32 H 1.09001 * 109.88587 * 239.60738 * 19 18 17 33 33 H 1.08998 * 110.01957 * 118.49874 * 19 18 17 34 34 H 1.08997 * 109.47559 * 300.00164 * 23 22 20 35 35 H 1.09008 * 109.47172 * 60.00403 * 23 22 20 36 36 H 1.08996 * 109.47629 * 179.97438 * 24 23 22 37 37 H 1.08997 * 109.47261 * 300.00774 * 24 23 22 38 38 H 1.09000 * 109.46865 * 60.00122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1660 -0.7390 5 6 3.3286 -2.3574 -0.0891 6 1 3.8092 -3.1790 -0.5993 7 6 2.9066 -2.5079 1.2263 8 7 1.9397 -1.7524 1.6966 9 14 3.7138 -3.7842 2.3259 10 1 4.8701 -3.1721 3.0283 11 1 2.7287 -4.2708 3.3249 12 1 4.1841 -4.9241 1.4985 13 6 3.3941 -1.0680 -2.0581 14 8 3.7985 -2.0340 -2.6701 15 6 3.1816 0.2419 -2.7724 16 1 3.7513 1.0406 -2.2977 17 6 1.6747 0.6027 -2.8431 18 7 1.5501 1.4863 -4.0219 19 6 2.6729 1.2097 -4.9367 20 6 3.5429 0.1197 -4.2762 21 1 3.2793 -0.8671 -4.6570 22 8 4.9313 0.3856 -4.4856 23 6 5.4832 -0.2718 -5.6279 24 6 6.9660 0.0834 -5.7539 25 1 -1.0498 -0.0002 -0.0003 26 1 3.0093 -0.0414 1.0268 27 1 3.0089 0.9111 -0.4769 28 1 1.6454 -1.8572 2.6149 29 1 1.3669 1.1294 -1.9398 30 1 1.0776 -0.2989 -2.9799 31 1 0.6642 1.3488 -4.4848 32 1 3.2619 2.1148 -5.0851 33 1 2.2945 0.8524 -5.8945 34 1 5.3760 -1.3504 -5.5136 35 1 4.9548 0.0528 -6.5245 36 1 7.3872 -0.4184 -6.6251 37 1 7.0729 1.1620 -5.8685 38 1 7.4947 -0.2408 -4.8575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690113467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:50 Heat of formation + Delta-G solvation = -1.624718 kcal Electronic energy + Delta-G solvation = -21109.690303 eV Core-core repulsion = 17954.801738 eV Total energy + Delta-G solvation = -3154.888565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65576 -37.82298 -36.20135 -35.19935 -32.16646 -31.28733 -31.20572 -29.53770 -27.75066 -26.42695 -24.71700 -22.71556 -21.73632 -21.00200 -18.90577 -17.91324 -17.16050 -16.55936 -16.31152 -15.53337 -15.26156 -14.60085 -14.29923 -14.25940 -13.79260 -13.53843 -12.98699 -12.87174 -12.53247 -12.44147 -12.23663 -12.05019 -11.87707 -11.65097 -11.21891 -11.09813 -10.96162 -10.85135 -10.48860 -10.36927 -10.26287 -9.33983 -9.29799 -9.26692 -8.82315 -8.51602 -8.17375 -7.96016 -6.36068 -3.83098 3.13512 3.25018 3.29392 3.63236 3.87263 3.89459 4.07835 4.15192 4.42649 4.82472 4.92003 5.06129 5.15777 5.21340 5.34302 5.42315 5.48920 5.54733 5.55500 5.65055 5.76597 5.90781 5.96849 6.05667 6.12128 6.20234 6.26069 6.36944 6.43245 6.80451 6.94020 7.06061 7.45780 7.53563 7.54460 7.99370 8.40109 8.85335 9.10591 9.34156 9.87929 10.62483 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.006755 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.241110 B = 4144.009060 C = 5264.258849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.100 4.100 3 C 0.227 3.773 4 N -0.436 5.436 5 C -0.316 4.316 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.858 5.858 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.457 3.543 14 O -0.585 6.585 15 C -0.107 4.107 16 H 0.102 0.898 17 C 0.057 3.943 18 N -0.677 5.677 19 C 0.024 3.976 20 C 0.091 3.909 21 H 0.080 0.920 22 O -0.370 6.370 23 C 0.058 3.942 24 C -0.149 4.149 25 H 0.197 0.803 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.269 0.731 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.337 0.663 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 6.611 -8.679 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.102 4.102 3 C 0.104 3.896 4 N -0.153 5.153 5 C -0.443 4.443 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.245 3.755 14 O -0.469 6.469 15 C -0.129 4.129 16 H 0.120 0.880 17 C -0.072 4.072 18 N -0.307 5.307 19 C -0.105 4.105 20 C 0.032 3.968 21 H 0.098 0.902 22 O -0.288 6.288 23 C -0.019 4.019 24 C -0.206 4.206 25 H 0.214 0.786 26 H 0.128 0.872 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.561 6.817 -8.345 10.888 hybrid contribution -0.507 -1.662 0.241 1.754 sum 1.054 5.155 -8.104 9.662 Atomic orbital electron populations 1.24191 0.95282 1.03902 1.05134 1.22947 0.94106 0.96881 0.96244 1.18434 0.84582 0.87224 0.99343 1.43723 1.55537 1.10013 1.06035 1.19710 1.37540 0.92205 0.94835 0.87546 1.25241 0.95176 0.98772 0.98014 1.70120 1.22455 1.40474 1.16582 0.86024 0.79035 0.80652 0.79619 1.20277 1.21137 1.19459 1.19542 0.84836 0.89004 0.82095 1.90499 1.51419 1.39483 1.65516 1.22386 0.96930 0.98469 0.95108 0.87975 1.22996 0.94221 0.95215 0.94756 1.61927 1.05023 1.55371 1.08363 1.23134 0.93510 0.99217 0.94673 1.23090 0.81594 0.97596 0.94530 0.90203 1.87880 1.23217 1.70689 1.47045 1.22452 0.94508 0.96898 0.88026 1.21720 0.94606 1.02065 1.02221 0.78553 0.87160 0.91792 0.92055 0.88457 0.93356 0.84726 0.89901 0.93166 0.92931 0.94073 0.91485 0.92156 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.39 19.03 29.55 0.56 -4.83 16 2 C -0.10 -2.19 8.50 -37.12 -0.32 -2.51 16 3 C 0.23 5.03 4.75 -6.83 -0.03 5.00 16 4 N -0.44 -10.97 2.59 -117.93 -0.30 -11.27 16 5 C -0.32 -8.66 9.43 -14.93 -0.14 -8.81 16 6 H 0.11 3.11 7.30 -52.49 -0.38 2.72 16 7 C 0.03 0.83 4.93 -17.46 -0.09 0.74 16 8 N -0.86 -22.07 9.01 55.50 0.50 -21.57 16 9 Si 0.92 20.43 29.62 -169.99 -5.03 15.39 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.46 11.15 7.00 -10.98 -0.08 11.08 16 14 O -0.58 -16.10 15.30 5.55 0.08 -16.01 16 15 C -0.11 -2.09 2.15 -89.52 -0.19 -2.28 16 16 H 0.10 1.95 7.25 -51.93 -0.38 1.57 16 17 C 0.06 1.00 5.70 -2.18 -0.01 0.99 16 18 N -0.68 -10.01 7.39 -110.67 -0.82 -10.83 16 19 C 0.02 0.35 7.36 -2.84 -0.02 0.33 16 20 C 0.09 1.62 2.54 -24.91 -0.06 1.56 16 21 H 0.08 1.54 7.09 -51.92 -0.37 1.17 16 22 O -0.37 -6.56 10.07 -35.23 -0.35 -6.92 16 23 C 0.06 0.83 6.51 37.16 0.24 1.08 16 24 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 25 H 0.20 3.27 7.80 -54.10 -0.42 2.85 16 26 H 0.11 2.58 6.37 -51.93 -0.33 2.25 16 27 H 0.06 1.22 5.96 -51.93 -0.31 0.91 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.10 1.73 5.26 -51.93 -0.27 1.46 16 30 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 31 H 0.34 4.23 8.91 -39.29 -0.35 3.88 16 32 H 0.08 1.18 8.06 -51.93 -0.42 0.77 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -30.53 312.63 -6.29 -36.82 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.32 Total: 8.70 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.25 Total: 0.96 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.62 Total: -43.67 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.27 Total: -22.93 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.53 -6.29 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690113467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.198 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds