Wall clock time and date at job start Mon Mar 30 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35240 * 126.06156 * 2 1 4 4 N 1.34976 * 107.86001 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.97360 * 179.97438 * 4 3 2 6 6 N 1.40074 * 108.04591 * 0.26320 * 4 3 2 7 7 C 1.31217 * 108.17051 * 359.55276 * 6 4 3 8 8 N 1.40163 * 125.97552 * 180.12536 * 7 6 4 9 9 C 1.34771 * 119.99594 * 0.37166 * 8 7 6 10 10 O 1.21295 * 120.00418 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00004 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.46607 * 319.99607 * 11 9 8 13 13 N 1.46900 * 109.47286 * 200.00180 * 11 9 8 14 14 C 1.52997 * 109.47398 * 79.99612 * 11 9 8 15 15 C 1.53000 * 109.47123 * 185.00521 * 14 11 9 16 16 C 1.52997 * 109.47123 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.47468 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99593 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00382 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00285 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46718 * 59.99737 * 21 19 17 23 23 H 1.48495 * 109.47603 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46864 * 299.99973 * 21 19 17 25 25 H 1.09008 * 109.46548 * 89.98075 * 1 2 3 26 26 H 1.09001 * 109.47173 * 209.97829 * 1 2 3 27 27 H 1.08994 * 109.47344 * 329.98508 * 1 2 3 28 28 H 1.08002 * 126.07041 * 0.03123 * 3 2 1 29 29 H 0.96995 * 119.99606 * 180.37407 * 8 7 6 30 30 H 1.00904 * 110.99662 * 176.04209 * 13 11 9 31 31 H 1.00899 * 110.99686 * 299.99300 * 13 11 9 32 32 H 1.09002 * 109.47245 * 305.00238 * 14 11 9 33 33 H 1.08997 * 109.47114 * 65.00134 * 14 11 9 34 34 H 1.09000 * 109.47336 * 300.00074 * 15 14 11 35 35 H 1.09002 * 109.47058 * 60.00098 * 15 14 11 36 36 H 1.09002 * 109.47245 * 299.99718 * 16 15 14 37 37 H 1.08997 * 109.47114 * 59.99613 * 16 15 14 38 38 H 0.96996 * 120.00530 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0933 0.0000 4 7 3.5853 0.6717 -0.0006 5 1 4.3718 1.2394 -0.0011 6 7 3.5815 -0.7291 -0.0071 7 6 2.3337 -1.1349 -0.0005 8 7 1.9015 -2.4682 -0.0014 9 6 2.8041 -3.4691 -0.0018 10 8 3.9903 -3.2161 -0.0020 11 6 2.3395 -4.9027 -0.0033 12 1 1.4783 -5.0061 0.6569 13 7 3.4264 -5.7702 0.4702 14 6 1.9445 -5.3094 -1.4243 15 6 1.3563 -6.7217 -1.4057 16 6 0.9619 -7.1287 -2.8268 17 6 0.3818 -8.5195 -2.8084 18 1 0.3029 -9.0593 -1.8764 19 6 -0.0470 -9.1032 -3.9816 20 7 0.0497 -8.4461 -5.1167 21 14 -0.7653 -10.8274 -3.9589 22 1 -1.9664 -10.8517 -3.0861 23 1 -1.1482 -11.2224 -5.3382 24 1 0.2473 -11.7786 -3.4342 25 1 -0.3633 0.0003 -1.0278 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5140 28 1 1.9717 2.1212 0.0005 29 1 0.9529 -2.6705 -0.0016 30 1 3.1195 -6.7289 0.5398 31 1 4.2368 -5.6922 -0.1257 32 1 1.2010 -4.6112 -1.8087 33 1 2.8257 -5.2913 -2.0656 34 1 2.0997 -7.4200 -1.0213 35 1 0.4750 -6.7398 -0.7644 36 1 0.2185 -6.4306 -3.2116 37 1 1.8433 -7.1106 -3.4677 38 1 -0.2523 -8.8566 -5.9420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691558837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:13 Heat of formation + Delta-G solvation = 23.316135 kcal Electronic energy + Delta-G solvation = -19555.200435 eV Core-core repulsion = 16433.686137 eV Total energy + Delta-G solvation = -3121.514298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51085 -39.64252 -36.10055 -34.92843 -33.36400 -32.39838 -31.25589 -30.53132 -27.89658 -26.58289 -25.60661 -23.20414 -21.78759 -20.46864 -20.18922 -19.63613 -17.97897 -17.19719 -16.39685 -16.33410 -15.48429 -14.95259 -14.67913 -14.56696 -14.39194 -13.88751 -13.69412 -13.26522 -13.20055 -12.95095 -12.50199 -12.21723 -12.08229 -11.85592 -11.23841 -11.06732 -10.81338 -10.80654 -10.63399 -10.58929 -9.81710 -9.75196 -9.39469 -9.15710 -8.91056 -8.51364 -8.37933 -8.34623 -6.03059 -4.06287 1.73761 2.26517 2.40205 3.12556 3.21901 3.31146 3.35934 3.38033 4.42490 4.47867 4.59226 4.81859 4.99047 5.05444 5.19292 5.28291 5.32667 5.34567 5.50655 5.59231 5.74177 5.87108 5.94355 6.00267 6.24164 6.55523 6.66379 6.72408 6.89176 7.01192 7.17367 7.25730 7.59081 7.62149 7.74753 7.75524 7.95866 8.22762 8.37546 9.00727 9.58260 11.08097 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.030149 B = 0.003334 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.496963 B = 8397.291521 C = 8894.480589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.258 4.258 3 C 0.070 3.930 4 N -0.478 5.478 5 H 0.441 0.559 6 N -0.274 5.274 7 C 0.305 3.695 8 N -0.641 5.641 9 C 0.516 3.484 10 O -0.485 6.485 11 C 0.081 3.919 12 H 0.103 0.897 13 N -0.830 5.830 14 C -0.148 4.148 15 C -0.108 4.108 16 C 0.022 3.978 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.177 0.823 29 H 0.420 0.580 30 H 0.354 0.646 31 H 0.350 0.650 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 18.846 11.112 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.272 4.272 3 C -0.077 4.077 4 N -0.188 5.188 5 H 0.286 0.714 6 N -0.104 5.104 7 C 0.047 3.953 8 N -0.293 5.293 9 C 0.302 3.698 10 O -0.354 6.354 11 C -0.035 4.035 12 H 0.121 0.879 13 N -0.362 5.362 14 C -0.188 4.188 15 C -0.146 4.146 16 C -0.015 4.015 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.195 0.805 29 H 0.257 0.743 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.123 18.981 11.587 22.456 hybrid contribution -1.494 -0.879 -1.107 2.057 sum 1.628 18.102 10.480 20.980 Atomic orbital electron populations 1.20045 0.88915 1.02299 1.01903 1.19804 0.97172 0.90253 1.19976 1.22253 0.84577 0.99626 1.01277 1.46119 1.06995 1.05387 1.60259 0.71446 1.78010 1.16821 0.87811 1.27787 1.19214 0.91328 0.85433 0.99309 1.43075 1.11057 1.01239 1.73879 1.21063 0.86247 0.87183 0.75325 1.90759 1.16113 1.83924 1.44572 1.21395 0.95601 0.88721 0.97750 0.87919 1.58676 1.07390 1.12483 1.57690 1.22438 1.01856 1.00205 0.94295 1.21656 0.99015 0.92236 1.01715 1.19077 0.96506 0.96154 0.89778 1.21209 1.40930 1.00535 0.93495 0.92706 1.25030 0.95942 0.97844 0.95621 1.69952 1.47477 1.37635 0.98379 0.86655 0.79594 0.84728 0.77010 1.20210 1.21291 1.20220 0.91775 0.92058 0.91714 0.80544 0.74291 0.83098 0.83611 0.91451 0.91615 0.93270 0.92917 0.96583 0.96696 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.22 36.01 0.37 -0.16 16 2 C -0.26 -2.64 6.12 -104.87 -0.64 -3.28 16 3 C 0.07 0.58 11.89 -17.24 -0.21 0.37 16 4 N -0.48 -4.82 7.35 30.44 0.22 -4.60 16 5 H 0.44 2.92 8.96 -182.62 -1.64 1.29 16 6 N -0.27 -4.18 10.93 31.44 0.34 -3.84 16 7 C 0.31 4.19 7.78 -154.39 -1.20 2.99 16 8 N -0.64 -8.23 5.45 -11.13 -0.06 -8.29 16 9 C 0.52 7.99 7.05 -10.99 -0.08 7.91 16 10 O -0.49 -9.33 14.97 5.54 0.08 -9.25 16 11 C 0.08 1.13 3.21 -68.87 -0.22 0.90 16 12 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 13 N -0.83 -11.83 8.94 -5.65 -0.05 -11.88 16 14 C -0.15 -2.36 4.84 -26.73 -0.13 -2.49 16 15 C -0.11 -2.04 4.92 -26.73 -0.13 -2.18 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 21 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.42 3.99 8.22 -40.82 -0.34 3.66 16 30 H 0.35 4.64 7.55 -39.29 -0.30 4.35 16 31 H 0.35 5.21 8.58 -39.29 -0.34 4.88 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -36.08 324.46 -8.35 -44.44 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.71 Total: 7.00 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.79 Total: -8.84 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 1.19 Total: -54.63 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.08 -8.35 -44.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691558837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.753 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds