Wall clock time and date at job start Mon Mar 30 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35240 * 126.06156 * 2 1 4 4 N 1.34976 * 107.86001 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.97360 * 179.97438 * 4 3 2 6 6 N 1.40074 * 108.04591 * 0.26320 * 4 3 2 7 7 C 1.31217 * 108.17051 * 359.55276 * 6 4 3 8 8 N 1.40163 * 125.97552 * 180.12536 * 7 6 4 9 9 C 1.34771 * 119.99594 * 0.37166 * 8 7 6 10 10 O 1.21295 * 120.00418 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00004 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.46607 * 319.99607 * 11 9 8 13 13 N 1.46900 * 109.47286 * 200.00180 * 11 9 8 14 14 C 1.52997 * 109.47398 * 79.99612 * 11 9 8 15 15 C 1.53000 * 109.47123 * 185.00521 * 14 11 9 16 16 C 1.52997 * 109.47123 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.47468 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99593 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00382 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00285 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46718 * 59.99737 * 21 19 17 23 23 H 1.48495 * 109.47603 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46864 * 299.99973 * 21 19 17 25 25 H 1.09008 * 109.46548 * 89.98075 * 1 2 3 26 26 H 1.09001 * 109.47173 * 209.97829 * 1 2 3 27 27 H 1.08994 * 109.47344 * 329.98508 * 1 2 3 28 28 H 1.08002 * 126.07041 * 0.03123 * 3 2 1 29 29 H 0.96995 * 119.99606 * 180.37407 * 8 7 6 30 30 H 1.00904 * 110.99662 * 176.04209 * 13 11 9 31 31 H 1.00899 * 110.99686 * 299.99300 * 13 11 9 32 32 H 1.09002 * 109.47245 * 305.00238 * 14 11 9 33 33 H 1.08997 * 109.47114 * 65.00134 * 14 11 9 34 34 H 1.09000 * 109.47336 * 300.00074 * 15 14 11 35 35 H 1.09002 * 109.47058 * 60.00098 * 15 14 11 36 36 H 1.09002 * 109.47245 * 299.99718 * 16 15 14 37 37 H 1.08997 * 109.47114 * 59.99613 * 16 15 14 38 38 H 0.96996 * 120.00530 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0933 0.0000 4 7 3.5853 0.6717 -0.0006 5 1 4.3718 1.2394 -0.0011 6 7 3.5815 -0.7291 -0.0071 7 6 2.3337 -1.1349 -0.0005 8 7 1.9015 -2.4682 -0.0014 9 6 2.8041 -3.4691 -0.0018 10 8 3.9903 -3.2161 -0.0020 11 6 2.3395 -4.9027 -0.0033 12 1 1.4783 -5.0061 0.6569 13 7 3.4264 -5.7702 0.4702 14 6 1.9445 -5.3094 -1.4243 15 6 1.3563 -6.7217 -1.4057 16 6 0.9619 -7.1287 -2.8268 17 6 0.3818 -8.5195 -2.8084 18 1 0.3029 -9.0593 -1.8764 19 6 -0.0470 -9.1032 -3.9816 20 7 0.0497 -8.4461 -5.1167 21 14 -0.7653 -10.8274 -3.9589 22 1 -1.9664 -10.8517 -3.0861 23 1 -1.1482 -11.2224 -5.3382 24 1 0.2473 -11.7786 -3.4342 25 1 -0.3633 0.0003 -1.0278 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5140 28 1 1.9717 2.1212 0.0005 29 1 0.9529 -2.6705 -0.0016 30 1 3.1195 -6.7289 0.5398 31 1 4.2368 -5.6922 -0.1257 32 1 1.2010 -4.6112 -1.8087 33 1 2.8257 -5.2913 -2.0656 34 1 2.0997 -7.4200 -1.0213 35 1 0.4750 -6.7398 -0.7644 36 1 0.2185 -6.4306 -3.2116 37 1 1.8433 -7.1106 -3.4677 38 1 -0.2523 -8.8566 -5.9420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691558837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:12 Heat of formation + Delta-G solvation = -4.306764 kcal Electronic energy + Delta-G solvation = -19556.398254 eV Core-core repulsion = 16433.686137 eV Total energy + Delta-G solvation = -3122.712116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36859 -40.78052 -37.47248 -36.01502 -35.27074 -33.11080 -33.00134 -31.45154 -29.44197 -27.34069 -27.05145 -24.76978 -22.99816 -21.79292 -21.35862 -20.66025 -18.77521 -18.45317 -18.28642 -17.37328 -16.57674 -16.45927 -16.16768 -15.96677 -15.54283 -15.08500 -14.63543 -14.43912 -14.25230 -13.89723 -13.67357 -13.67143 -13.51458 -12.90633 -12.76076 -12.54725 -12.45398 -12.37817 -12.10623 -11.62845 -11.48314 -11.39091 -11.24056 -10.78201 -10.54262 -9.82772 -9.70627 -9.16718 -8.19106 -6.30516 0.89713 1.32046 1.41533 1.44147 1.51875 1.53105 2.11480 2.40068 2.42573 3.14377 3.53878 3.64653 3.85299 3.95961 4.05359 4.25670 4.39869 4.45887 4.54641 4.67741 4.76533 4.92234 5.01121 5.01986 5.18447 5.24631 5.25244 5.37148 5.53248 5.74227 5.76388 5.86428 5.95978 6.12758 6.24738 6.47319 6.57223 6.81077 6.87629 7.16846 7.39355 8.92418 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.030149 B = 0.003334 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.496963 B = 8397.291521 C = 8894.480589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.274 4.274 3 C 0.090 3.910 4 N -0.472 5.472 5 H 0.453 0.547 6 N -0.337 5.337 7 C 0.278 3.722 8 N -0.629 5.629 9 C 0.514 3.486 10 O -0.529 6.529 11 C 0.093 3.907 12 H 0.132 0.868 13 N -0.832 5.832 14 C -0.136 4.136 15 C -0.094 4.094 16 C 0.023 3.977 17 C -0.542 4.542 18 H 0.065 0.935 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.268 1.268 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.434 0.566 30 H 0.360 0.640 31 H 0.345 0.655 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.069 0.931 36 H -0.007 1.007 37 H -0.017 1.017 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 19.518 12.546 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.287 4.287 3 C -0.058 4.058 4 N -0.183 5.183 5 H 0.300 0.700 6 N -0.168 5.168 7 C 0.021 3.979 8 N -0.282 5.282 9 C 0.300 3.700 10 O -0.401 6.401 11 C -0.023 4.023 12 H 0.150 0.850 13 N -0.365 5.365 14 C -0.176 4.176 15 C -0.131 4.131 16 C -0.015 4.015 17 C -0.580 4.580 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.193 1.193 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.244 0.756 29 H 0.274 0.726 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.011 0.989 37 H 0.001 0.999 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.569 19.663 13.045 23.649 hybrid contribution -1.006 -0.958 -1.569 2.095 sum 0.564 18.705 11.477 21.952 Atomic orbital electron populations 1.20109 0.86895 1.03581 1.02350 1.20235 0.98678 0.89419 1.20386 1.23051 0.83202 1.01364 0.98176 1.46133 1.08551 1.04009 1.59624 0.70006 1.77865 1.18486 0.90653 1.29834 1.19629 0.91951 0.86178 1.00161 1.42927 1.11450 1.01041 1.72758 1.21281 0.85945 0.88046 0.74701 1.90737 1.17942 1.84623 1.46821 1.21337 0.96310 0.87939 0.96666 0.85036 1.58691 1.07336 1.13006 1.57455 1.22253 1.00992 0.98698 0.95608 1.21434 0.99998 0.93914 0.97789 1.19009 0.94376 0.95066 0.93002 1.21715 1.40628 1.01715 0.93965 0.91695 1.26001 0.96406 1.02366 0.95242 1.70098 1.48713 1.39690 0.99116 0.85517 0.79184 0.79293 0.77164 1.18829 1.21199 1.19272 0.91666 0.91803 0.89488 0.75624 0.72585 0.82344 0.84184 0.90788 0.93596 0.92526 0.91247 0.98856 0.99899 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.22 71.24 0.73 -0.12 16 2 C -0.27 -5.08 6.12 -20.03 -0.12 -5.20 16 3 C 0.09 1.23 11.89 83.52 0.99 2.23 16 4 N -0.47 -8.98 7.35 -57.62 -0.42 -9.40 16 5 H 0.45 5.53 8.96 -213.34 -1.91 3.61 16 6 N -0.34 -10.38 10.93 -54.45 -0.59 -10.98 16 7 C 0.28 7.51 7.78 133.32 1.04 8.55 16 8 N -0.63 -15.89 5.45 -307.51 -1.68 -17.57 16 9 C 0.51 15.91 7.05 87.66 0.62 16.53 16 10 O -0.53 -20.92 14.97 -3.08 -0.05 -20.97 16 11 C 0.09 2.49 3.21 44.17 0.14 2.63 16 12 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 13 N -0.83 -23.17 8.94 -171.80 -1.54 -24.70 16 14 C -0.14 -4.27 4.84 30.59 0.15 -4.13 16 15 C -0.09 -3.46 4.92 30.59 0.15 -3.31 16 16 C 0.02 1.15 4.97 29.85 0.15 1.30 16 17 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.94 -56.93 13.29 21.44 0.28 -56.64 16 21 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.06 0.71 7.70 -2.39 -0.02 0.69 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.23 0.63 8.06 -2.91 -0.02 0.61 16 29 H 0.43 7.75 8.22 -92.71 -0.76 6.99 16 30 H 0.36 9.00 7.55 -89.69 -0.68 8.32 16 31 H 0.34 10.38 8.58 -89.69 -0.77 9.61 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 2.00 6.87 -2.39 -0.02 1.99 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -80.53 324.46 -0.43 -80.97 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -3.01 Total: 24.69 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.54 Total: -11.06 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -3.94 Total: -119.29 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -80.53 -0.43 -80.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691558837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.660 kcal (2) G-P(sol) polarization free energy of solvation -80.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds