Wall clock time and date at job start Mon Mar 30 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99987 * 2 1 4 4 C 1.50705 * 109.46726 * 270.00202 * 3 2 1 5 5 C 1.41376 * 126.58074 * 90.00279 * 4 3 2 6 6 C 1.34515 * 106.84242 * 179.97438 * 5 4 3 7 7 O 1.34305 * 108.41856 * 359.97438 * 6 5 4 8 8 C 1.34298 * 109.47744 * 0.02562 * 7 6 5 9 9 C 1.34775 * 120.00015 * 179.97438 * 2 1 3 10 10 O 1.21280 * 119.99798 * 179.97438 * 9 2 1 11 11 C 1.50700 * 119.99929 * 0.02562 * 9 2 1 12 12 H 1.08997 * 109.47462 * 319.99608 * 11 9 2 13 13 N 1.46907 * 109.47096 * 199.99632 * 11 9 2 14 14 C 1.52996 * 109.47255 * 79.99712 * 11 9 2 15 15 C 1.53007 * 109.47288 * 184.99779 * 14 11 9 16 16 C 1.50697 * 109.47165 * 179.97438 * 15 14 11 17 17 H 1.08005 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99939 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99844 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00218 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47012 * 60.00255 * 20 18 16 22 22 H 1.48499 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47091 * 300.00719 * 20 18 16 24 24 H 1.09004 * 109.47235 * 90.00140 * 1 2 3 25 25 H 1.09004 * 109.47068 * 209.99912 * 1 2 3 26 26 H 1.09000 * 109.47329 * 330.00249 * 1 2 3 27 27 H 1.09002 * 109.47221 * 150.00049 * 3 2 1 28 28 H 1.08997 * 109.46986 * 29.99895 * 3 2 1 29 29 H 1.08003 * 126.58479 * 359.94195 * 5 4 3 30 30 H 1.07996 * 125.79220 * 179.73892 * 6 5 4 31 31 H 1.08001 * 125.79115 * 180.02562 * 8 7 6 32 32 H 1.00903 * 110.99904 * 300.00367 * 13 11 9 33 33 H 1.00909 * 110.99491 * 63.95252 * 13 11 9 34 34 H 1.08998 * 109.47588 * 305.00137 * 14 11 9 35 35 H 1.09009 * 109.47263 * 65.00483 * 14 11 9 36 36 H 1.08997 * 109.46931 * 300.00135 * 15 14 11 37 37 H 1.08996 * 109.46986 * 60.00092 * 15 14 11 38 38 H 0.97001 * 119.99815 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 6 1.6058 2.5146 -2.2152 6 6 2.2104 2.6533 -3.4088 7 8 3.3685 1.9738 -3.3794 8 6 3.5181 1.3957 -2.1764 9 6 2.1389 -1.1672 0.0005 10 8 3.3517 -1.1671 0.0001 11 6 1.3854 -2.4723 0.0005 12 1 0.5217 -2.3932 0.6608 13 7 2.2675 -3.5470 0.4747 14 6 0.9139 -2.7890 -1.4201 15 6 0.0440 -4.0475 -1.4002 16 6 -0.4209 -4.3591 -2.7994 17 1 -0.1251 -3.7234 -3.6208 18 6 -1.2229 -5.4564 -3.0310 19 7 -1.5827 -6.2308 -2.0308 20 14 -1.7986 -5.8431 -4.7655 21 1 -0.6196 -6.0698 -5.6394 22 1 -2.6430 -7.0645 -4.7460 23 1 -2.5913 -4.7021 -5.2899 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0284 0.5138 29 1 0.6580 2.9405 -1.9205 30 1 1.8276 3.2128 -4.2495 31 1 4.3553 0.7873 -1.8677 32 1 3.0763 -3.6404 -0.1213 33 1 2.5409 -3.3936 1.4339 34 1 0.3324 -1.9514 -1.8052 35 1 1.7794 -2.9558 -2.0615 36 1 0.6256 -4.8851 -1.0151 37 1 -0.8214 -3.8809 -0.7589 38 1 -2.1472 -7.0026 -2.1937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691630519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:23 Heat of formation + Delta-G solvation = -48.452339 kcal Electronic energy + Delta-G solvation = -20339.236708 eV Core-core repulsion = 17182.317545 eV Total energy + Delta-G solvation = -3156.919163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.49224 -41.16170 -37.14402 -36.75991 -34.85868 -34.09931 -31.93472 -30.96252 -28.79051 -27.98612 -26.99283 -24.85079 -22.49909 -22.27921 -21.44698 -20.15175 -18.64019 -18.42806 -18.17156 -17.31049 -16.87998 -16.73234 -16.43084 -16.22309 -15.58050 -15.17504 -14.81888 -14.30742 -14.22231 -14.03871 -13.75038 -13.69098 -13.61647 -13.29240 -13.13364 -12.77330 -12.52334 -12.40944 -12.17523 -11.75520 -11.60622 -11.25006 -11.02908 -10.73641 -10.48415 -9.80352 -9.65319 -9.43995 -8.13811 -6.24120 0.79450 1.40450 1.42646 1.43798 1.51666 1.58858 2.26431 2.28502 2.44463 3.19003 3.48764 3.66915 3.89355 3.93842 4.01567 4.14211 4.26944 4.36728 4.49721 4.60047 4.66309 4.76536 4.80959 4.88148 5.01525 5.07700 5.22995 5.23982 5.48419 5.56156 5.58051 5.83878 5.98056 6.07582 6.16956 6.30032 6.32441 6.51688 6.93644 7.06755 7.43832 8.97150 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.005019 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.795244 B = 5577.666758 C = 6436.876031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.182 3.818 4 C -0.209 4.209 5 C -0.209 4.209 6 C -0.049 4.049 7 O -0.196 6.196 8 C -0.041 4.041 9 C 0.486 3.514 10 O -0.579 6.579 11 C 0.084 3.916 12 H 0.111 0.889 13 N -0.819 5.819 14 C -0.077 4.077 15 C 0.042 3.958 16 C -0.545 4.545 17 H 0.052 0.948 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.957 3.043 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.171 0.829 30 H 0.235 0.765 31 H 0.197 0.803 32 H 0.344 0.656 33 H 0.347 0.653 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.005 0.995 37 H -0.004 1.004 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 19.893 3.689 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C 0.060 3.940 4 C -0.211 4.211 5 C -0.228 4.228 6 C -0.116 4.116 7 O -0.091 6.091 8 C -0.109 4.109 9 C 0.273 3.727 10 O -0.459 6.459 11 C -0.031 4.031 12 H 0.128 0.872 13 N -0.348 5.348 14 C -0.115 4.115 15 C 0.005 3.995 16 C -0.583 4.583 17 H 0.070 0.930 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.135 0.865 29 H 0.188 0.812 30 H 0.251 0.749 31 H 0.214 0.786 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.015 0.985 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.524 19.231 3.385 20.044 hybrid contribution 0.328 0.147 -0.635 0.730 sum 4.851 19.379 2.750 20.165 Atomic orbital electron populations 1.22113 0.77473 1.04910 1.02739 1.48077 1.08237 1.05229 1.71874 1.19837 0.98300 0.84917 0.90962 1.21003 0.96502 1.04080 0.99520 1.22018 1.02713 1.03887 0.94231 1.24788 0.85325 0.99936 1.01522 1.84071 1.38200 1.52787 1.34080 1.24155 1.02394 1.01166 0.83230 1.22351 0.88323 0.87426 0.74574 1.90594 1.15210 1.88013 1.52081 1.21668 0.96378 0.85635 0.99431 0.87153 1.58996 1.23949 1.44261 1.07601 1.21320 0.98586 0.99268 0.92347 1.18797 0.93266 0.92649 0.94759 1.21671 1.30679 1.10845 0.95135 0.93007 1.25858 0.96412 0.96041 1.00987 1.70091 1.37149 1.16650 1.32914 0.85631 0.78380 0.77817 0.79990 1.19796 1.20705 1.19075 0.92719 0.90445 0.87629 0.90320 0.86453 0.81192 0.74910 0.78636 0.84270 0.84002 0.91956 0.94657 0.97668 0.98533 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.61 127.77 1.23 2.60 16 2 N -0.60 -14.76 2.86 -851.12 -2.43 -17.19 16 3 C 0.18 3.82 5.96 85.63 0.51 4.33 16 4 C -0.21 -4.87 5.75 -19.94 -0.11 -4.99 16 5 C -0.21 -4.08 10.87 22.19 0.24 -3.84 16 6 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 7 O -0.20 -4.99 10.65 -2.45 -0.03 -5.01 16 8 C -0.04 -1.07 12.01 66.97 0.80 -0.27 16 9 C 0.49 15.21 6.91 87.66 0.61 15.82 16 10 O -0.58 -20.71 15.83 -3.03 -0.05 -20.76 16 11 C 0.08 2.86 2.42 44.17 0.11 2.96 16 12 H 0.11 3.46 6.31 -2.39 -0.02 3.45 16 13 N -0.82 -28.25 8.44 -171.80 -1.45 -29.70 16 14 C -0.08 -3.19 4.71 30.60 0.14 -3.05 16 15 C 0.04 2.23 4.86 29.85 0.15 2.37 16 16 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 17 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 18 C 0.01 0.29 5.46 84.65 0.46 0.76 16 19 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 20 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H 0.05 1.19 7.65 -2.38 -0.02 1.17 16 25 H 0.08 1.59 5.94 -2.39 -0.01 1.57 16 26 H 0.11 1.30 7.89 -2.39 -0.02 1.28 16 27 H 0.08 1.82 7.42 -2.39 -0.02 1.80 16 28 H 0.12 1.66 7.89 -2.39 -0.02 1.65 16 29 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.20 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16 33 H 0.35 10.17 9.06 -89.69 -0.81 9.36 16 34 H 0.06 2.45 6.94 -2.39 -0.02 2.43 16 35 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.00 0.28 7.75 -2.39 -0.02 0.27 16 37 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.93 323.63 3.03 -68.90 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.50 Total: 27.92 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 5.18 Total: -14.49 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -3.60 Total: -103.17 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.07 Total: -25.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.93 3.03 -68.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.444 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds