Wall clock time and date at job start Mon Mar 30 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 N 1.34967 * 107.86281 * 179.89883 * 3 2 1 5 5 C 1.46502 * 125.97405 * 180.10260 * 4 3 2 6 6 N 1.40072 * 108.04566 * 0.36552 * 4 3 2 7 7 C 1.31214 * 108.16940 * 359.77327 * 6 4 3 8 8 N 1.40158 * 125.97012 * 179.97438 * 7 6 4 9 9 C 1.34779 * 120.00220 * 0.02743 * 8 7 6 10 10 O 1.21287 * 119.99625 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99943 * 180.02562 * 9 8 7 12 12 H 1.09003 * 109.47447 * 319.99908 * 11 9 8 13 13 N 1.46897 * 109.47000 * 200.00013 * 11 9 8 14 14 C 1.53000 * 109.47365 * 79.99751 * 11 9 8 15 15 C 1.53001 * 109.47437 * 184.99851 * 14 11 9 16 16 C 1.50692 * 109.47406 * 180.02562 * 15 14 11 17 17 H 1.08004 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00343 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99910 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47573 * 90.00156 * 20 18 16 22 22 H 1.48508 * 109.47116 * 209.99903 * 20 18 16 23 23 H 1.48502 * 109.47354 * 329.99534 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.08005 * 126.06881 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47193 * 270.28176 * 5 4 3 29 29 H 1.09003 * 109.47327 * 30.28964 * 5 4 3 30 30 H 1.09001 * 109.46690 * 150.28205 * 5 4 3 31 31 H 0.97006 * 119.99771 * 180.02562 * 8 7 6 32 32 H 1.00903 * 110.99979 * 176.04799 * 13 11 9 33 33 H 1.00898 * 111.00174 * 299.99924 * 13 11 9 34 34 H 1.08998 * 109.47403 * 305.00235 * 14 11 9 35 35 H 1.09001 * 109.46681 * 65.00200 * 14 11 9 36 36 H 1.08998 * 109.47137 * 300.00546 * 15 14 11 37 37 H 1.09004 * 109.46988 * 59.99722 * 15 14 11 38 38 H 0.96997 * 120.00409 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 7 3.5853 0.6715 0.0023 5 6 4.7732 1.5289 0.0052 6 7 3.5814 -0.7292 -0.0048 7 6 2.3336 -1.1350 -0.0061 8 7 1.9014 -2.4682 -0.0131 9 6 2.8040 -3.4692 -0.0186 10 8 3.9901 -3.2162 -0.0180 11 6 2.3392 -4.9027 -0.0267 12 1 1.4782 -5.0093 0.6332 13 7 3.4262 -5.7724 0.4422 14 6 1.9438 -5.3027 -1.4496 15 6 1.3555 -6.7150 -1.4376 16 6 0.9666 -7.1092 -2.8391 17 1 1.1237 -6.4213 -3.6568 18 6 0.4102 -8.3479 -3.0775 19 7 0.2193 -9.1858 -2.0820 20 14 -0.0713 -8.8368 -4.8150 21 1 1.0789 -9.5011 -5.4791 22 1 -1.2224 -9.7737 -4.7646 23 1 -0.4533 -7.6243 -5.5825 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1211 -0.0004 28 1 5.0669 1.7463 -1.0217 29 1 4.5475 2.4607 0.5237 30 1 5.5891 1.0174 0.5159 31 1 0.9527 -2.6705 -0.0140 32 1 3.1194 -6.7315 0.5073 33 1 4.2365 -5.6917 -0.1535 34 1 1.2002 -4.6026 -1.8305 35 1 2.8248 -5.2815 -2.0910 36 1 2.0990 -7.4151 -1.0567 37 1 0.4745 -6.7362 -0.7960 38 1 -0.1725 -10.0571 -2.2497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697717697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:45 Heat of formation + Delta-G solvation = 9.083087 kcal Electronic energy + Delta-G solvation = -19793.906664 eV Core-core repulsion = 16671.775175 eV Total energy + Delta-G solvation = -3122.131489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.37103 -40.77581 -37.19269 -36.19347 -34.84873 -33.69202 -32.32655 -31.70556 -28.91837 -28.17343 -26.44087 -25.31954 -23.17092 -22.07214 -21.29693 -20.57640 -18.86190 -18.21258 -18.03550 -16.80158 -16.70327 -16.50307 -16.04065 -15.82388 -15.65218 -14.81784 -14.73890 -14.43382 -14.23240 -14.14332 -14.00195 -13.48732 -13.20562 -13.16742 -12.95742 -12.75002 -12.70215 -12.51396 -11.85328 -11.78877 -11.74190 -11.44972 -11.29843 -10.75288 -10.55507 -9.79669 -9.68781 -9.00243 -8.20966 -6.31147 0.89066 1.31286 1.38004 1.40218 1.40948 1.51563 2.13104 2.20772 2.40727 3.12750 3.51089 3.70102 3.76852 4.06403 4.08576 4.19490 4.43334 4.46741 4.51240 4.63505 4.67083 4.71431 4.80770 4.89754 5.01139 5.06863 5.24857 5.35282 5.46826 5.65336 5.75920 5.80878 5.99711 6.16667 6.21753 6.25439 6.44834 6.83870 6.85243 7.17791 7.37833 8.89785 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.027210 B = 0.003760 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.786790 B = 7445.504819 C = 7861.308023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.272 4.272 3 C 0.080 3.920 4 N -0.383 5.383 5 C 0.098 3.902 6 N -0.339 5.339 7 C 0.273 3.727 8 N -0.630 5.630 9 C 0.518 3.482 10 O -0.529 6.529 11 C 0.090 3.910 12 H 0.119 0.881 13 N -0.830 5.830 14 C -0.121 4.121 15 C 0.031 3.969 16 C -0.546 4.546 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.266 1.266 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.224 0.776 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.432 0.568 32 H 0.356 0.644 33 H 0.344 0.656 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.004 0.996 37 H 0.007 0.993 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 23.263 5.079 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.286 4.286 3 C -0.067 4.067 4 N -0.167 5.167 5 C -0.041 4.041 6 N -0.169 5.169 7 C 0.018 3.982 8 N -0.282 5.282 9 C 0.305 3.695 10 O -0.401 6.401 11 C -0.026 4.026 12 H 0.136 0.864 13 N -0.362 5.362 14 C -0.161 4.161 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.190 1.190 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.241 0.759 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.095 0.905 31 H 0.272 0.728 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.026 0.974 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.649 23.372 5.801 24.226 hybrid contribution -1.344 -1.175 -1.760 2.507 sum 1.306 22.197 4.041 22.600 Atomic orbital electron populations 1.20095 0.86818 1.03328 1.02464 1.20199 0.98589 0.89330 1.20433 1.22972 0.82855 1.01333 0.99505 1.48637 1.07482 1.03300 1.57241 1.22154 0.84440 0.93152 1.04399 1.77898 1.18489 0.90636 1.29855 1.19614 0.92063 0.85976 1.00590 1.42926 1.11330 1.01118 1.72813 1.21186 0.85936 0.87826 0.74600 1.90707 1.17818 1.84600 1.47003 1.21352 0.95856 0.88079 0.97295 0.86359 1.58736 1.07374 1.12718 1.57347 1.22155 1.00268 0.99335 0.94354 1.18968 0.94997 0.90869 0.95813 1.21609 1.41064 1.00749 0.94951 0.92831 1.25845 0.95679 0.96590 1.01108 1.70052 1.45074 1.08476 1.32943 0.85548 0.77909 0.78295 0.79900 1.20231 1.20548 1.18993 0.91147 0.92285 0.89612 0.75929 0.89897 0.85459 0.90504 0.72771 0.82797 0.84345 0.91390 0.93928 0.97815 0.97449 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.22 71.24 0.73 -0.30 16 2 C -0.27 -6.01 6.12 -20.03 -0.12 -6.13 16 3 C 0.08 1.40 11.39 83.52 0.95 2.35 16 4 N -0.38 -8.92 4.01 -369.60 -1.48 -10.40 16 5 C 0.10 1.31 11.47 127.77 1.47 2.77 16 6 N -0.34 -11.76 10.80 -54.45 -0.59 -12.35 16 7 C 0.27 8.50 7.78 133.33 1.04 9.54 16 8 N -0.63 -19.03 5.45 -307.52 -1.68 -20.71 16 9 C 0.52 18.92 7.05 87.66 0.62 19.54 16 10 O -0.53 -23.36 14.97 -3.05 -0.05 -23.41 16 11 C 0.09 3.13 3.21 44.17 0.14 3.27 16 12 H 0.12 3.68 8.14 -2.39 -0.02 3.67 16 13 N -0.83 -29.81 8.94 -171.81 -1.54 -31.34 16 14 C -0.12 -4.84 4.78 30.59 0.15 -4.69 16 15 C 0.03 1.51 4.74 29.85 0.14 1.65 16 16 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 20 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.90 7.70 -2.39 -0.02 0.88 16 26 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.43 10.07 8.22 -92.70 -0.76 9.31 16 32 H 0.36 12.66 7.55 -89.69 -0.68 11.99 16 33 H 0.34 12.73 8.58 -89.70 -0.77 11.96 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.00 0.18 6.87 -2.39 -0.02 0.17 16 37 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -78.35 325.92 1.67 -76.68 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -1.11 Total: 30.97 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.80 Total: -1.06 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.00 Total: -128.74 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -78.35 1.67 -76.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697717697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.764 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds