Wall clock time and date at job start Mon Mar 30 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42890 * 114.00267 * 2 1 4 4 C 1.52997 * 109.47537 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47618 * 175.00054 * 4 3 2 6 6 C 1.53002 * 109.46997 * 54.99640 * 4 3 2 7 7 N 1.46896 * 109.46830 * 185.00217 * 6 4 3 8 8 N 1.46502 * 109.46869 * 294.99831 * 4 3 2 9 9 C 1.39781 * 120.00203 * 204.99573 * 8 4 3 10 10 C 1.38953 * 120.00232 * 0.28154 * 9 8 4 11 11 C 1.38020 * 119.98851 * 180.25377 * 10 9 8 12 12 C 1.38889 * 120.00747 * 359.48928 * 11 10 9 13 13 O 1.35805 * 119.99439 * 180.25657 * 12 11 10 14 14 C 1.34809 * 116.99878 * 354.46043 * 13 12 11 15 15 H 1.08004 * 119.99808 * 5.04935 * 14 13 12 16 16 C 1.38619 * 119.99794 * 185.05711 * 14 13 12 17 17 N 1.31579 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99847 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47249 * 119.99810 * 18 16 14 21 21 H 1.48503 * 109.47022 * 240.00064 * 18 16 14 22 22 C 1.38904 * 120.01578 * 0.23022 * 12 11 10 23 23 C 1.38009 * 120.00109 * 0.02847 * 22 12 11 24 24 H 1.09004 * 109.46863 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46509 * 299.99965 * 1 2 3 26 26 H 1.09000 * 109.46869 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47315 * 59.99734 * 3 2 1 28 28 H 1.09003 * 109.47248 * 300.00119 * 3 2 1 29 29 H 1.08998 * 109.47427 * 305.00456 * 6 4 3 30 30 H 1.08999 * 109.47042 * 65.00525 * 6 4 3 31 31 H 1.00903 * 111.00571 * 56.05210 * 7 6 4 32 32 H 1.00906 * 111.00252 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99760 * 25.00078 * 8 4 3 34 34 H 1.07995 * 120.00933 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.99493 * 179.77004 * 11 10 9 36 36 H 0.96996 * 120.00145 * 180.02562 * 17 16 14 37 37 H 1.07995 * 119.99923 * 180.02562 * 22 12 11 38 38 H 1.07998 * 120.00362 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 -0.0902 6 6 3.9781 0.3196 -1.1826 7 7 5.4297 0.1045 -1.1153 8 7 3.9767 0.5639 1.2509 9 6 5.2671 0.8024 1.7324 10 6 6.1295 1.6328 1.0271 11 6 7.4054 1.8638 1.5001 12 6 7.8237 1.2749 2.6863 13 8 9.0774 1.5067 3.1542 14 6 9.9027 2.2225 2.3644 15 1 9.5325 2.6523 1.4453 16 6 11.2266 2.4067 2.7318 17 7 11.6775 1.8833 3.8517 18 14 12.3705 3.3979 1.6371 19 1 11.6247 3.8742 0.4445 20 1 12.8921 4.5644 2.3936 21 1 13.5040 2.5427 1.2025 22 6 6.9598 0.4495 3.3947 23 6 5.6858 0.2138 2.9194 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.4660 -0.6417 -1.1413 30 1 3.7285 0.8245 -2.1158 31 1 5.6942 -0.3040 -0.2314 32 1 5.7471 -0.4642 -1.8861 33 1 3.3734 -0.0125 1.7454 34 1 5.8028 2.0944 0.1070 35 1 8.0770 2.5063 0.9500 36 1 12.6037 2.0125 4.1090 37 1 7.2852 -0.0080 4.3173 38 1 5.0139 -0.4277 3.4704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708770344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:07 Heat of formation + Delta-G solvation = -33.408413 kcal Electronic energy + Delta-G solvation = -20044.518287 eV Core-core repulsion = 16888.251478 eV Total energy + Delta-G solvation = -3156.266810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.34840 -38.39951 -37.06650 -35.25830 -32.72752 -31.96470 -30.22104 -29.98769 -27.04362 -26.30156 -24.96476 -24.48707 -22.36623 -21.06901 -19.87087 -17.85335 -17.37844 -16.86030 -16.19103 -16.02165 -15.57319 -15.18169 -14.82506 -14.33906 -14.15420 -13.94618 -13.34475 -13.29253 -12.93120 -12.57241 -12.47145 -12.35928 -11.77155 -11.67954 -11.47369 -11.37690 -11.22552 -11.08471 -10.88054 -10.45075 -10.28870 -9.96818 -9.18112 -9.10133 -8.47858 -8.28140 -7.99461 -6.29319 -6.25198 -3.82363 2.34466 2.67114 3.22812 3.24369 3.29623 3.48844 3.88010 4.12173 4.52248 4.77447 4.89691 4.98124 5.07069 5.15931 5.26020 5.27680 5.33542 5.36320 5.51500 5.52430 5.73517 5.88191 5.89120 6.04587 6.33382 6.48143 6.59175 6.83888 6.96160 7.12033 7.22843 7.34766 7.46029 7.58187 7.69543 7.73368 8.09834 8.19449 8.37574 9.20714 9.96520 10.93223 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037759 B = 0.003905 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.375759 B = 7167.909251 C = 7626.407192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.054 3.946 4 C 0.164 3.836 5 H 0.092 0.908 6 C 0.049 3.951 7 N -0.846 5.846 8 N -0.753 5.753 9 C 0.112 3.888 10 C -0.116 4.116 11 C -0.194 4.194 12 C 0.115 3.885 13 O -0.191 6.191 14 C -0.383 4.383 15 H 0.089 0.911 16 C 0.034 3.966 17 N -0.871 5.871 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.158 4.158 23 C -0.144 4.144 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.354 0.646 32 H 0.331 0.669 33 H 0.393 0.607 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.227 -2.198 -8.951 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.024 4.024 4 C 0.057 3.943 5 H 0.110 0.890 6 C -0.084 4.084 7 N -0.378 5.378 8 N -0.390 5.390 9 C 0.014 3.986 10 C -0.139 4.139 11 C -0.214 4.214 12 C 0.063 3.937 13 O -0.096 6.096 14 C -0.460 4.460 15 H 0.106 0.894 16 C -0.168 4.168 17 N -0.508 5.508 18 Si 0.762 3.238 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.178 4.178 23 C -0.166 4.166 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.143 0.857 33 H 0.226 0.774 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.710 -1.528 -8.839 20.749 hybrid contribution -0.170 -0.487 -0.382 0.642 sum -18.880 -2.014 -9.221 21.108 Atomic orbital electron populations 1.22734 0.81251 1.02658 0.99895 1.87911 1.19445 1.27761 1.95378 1.22881 0.93646 0.85030 1.00853 1.20850 0.90428 0.97760 0.85231 0.89044 1.22198 0.89291 0.99054 0.97833 1.58979 1.12411 1.57652 1.08786 1.44191 1.12980 1.56683 1.25111 1.17424 0.85734 1.00398 0.95000 1.20476 0.93436 1.00199 0.99740 1.21027 0.96755 1.05197 0.98403 1.19274 0.87176 0.94616 0.92623 1.83981 1.17474 1.65387 1.42742 1.21296 0.90546 1.29751 1.04404 0.89351 1.25204 0.96453 0.98053 0.97082 1.70060 1.15911 1.43107 1.21728 0.85710 0.79853 0.78923 0.79304 1.19213 1.20416 1.20394 1.19943 0.93342 1.02761 1.01729 1.20101 0.96152 1.03908 0.96433 0.89754 0.94107 0.94182 0.92428 0.92302 0.94865 0.91606 0.82942 0.85725 0.77363 0.86128 0.85722 0.92462 0.86765 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.86 9.46 -35.23 -0.33 -4.19 16 3 C 0.05 0.50 5.68 37.16 0.21 0.71 16 4 C 0.16 1.93 2.67 -67.93 -0.18 1.75 16 5 H 0.09 1.15 6.47 -51.93 -0.34 0.81 16 6 C 0.05 0.58 6.42 -3.82 -0.02 0.55 16 7 N -0.85 -11.40 7.64 -10.37 -0.08 -11.48 16 8 N -0.75 -10.23 5.01 -52.11 -0.26 -10.49 16 9 C 0.11 1.90 5.22 -83.70 -0.44 1.47 16 10 C -0.12 -2.17 7.24 -39.40 -0.29 -2.45 16 11 C -0.19 -4.32 9.16 -39.42 -0.36 -4.68 16 12 C 0.12 2.86 6.65 -39.09 -0.26 2.60 16 13 O -0.19 -5.62 9.76 -0.06 0.00 -5.62 16 14 C -0.38 -11.07 9.48 30.87 0.29 -10.77 16 15 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 16 C 0.03 0.98 5.49 -17.52 -0.10 0.89 16 17 N -0.87 -26.44 13.67 55.48 0.76 -25.69 16 18 Si 0.94 21.31 29.55 -169.99 -5.02 16.29 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.16 -3.41 9.98 -39.42 -0.39 -3.81 16 23 C -0.14 -2.61 9.89 -39.40 -0.39 -3.00 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.41 7.39 -51.93 -0.38 0.03 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.35 5.48 6.02 -39.29 -0.24 5.24 16 32 H 0.33 3.94 9.08 -39.29 -0.36 3.58 16 33 H 0.39 5.04 8.39 -40.82 -0.34 4.69 16 34 H 0.12 2.09 5.50 -52.49 -0.29 1.80 16 35 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -31.65 312.27 -6.07 -37.73 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.81 Total: -15.42 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.42 Total: -47.66 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.33 Total: -9.81 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.65 -6.07 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708770344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.321 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds