Wall clock time and date at job start Mon Mar 30 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42890 * 114.00267 * 2 1 4 4 C 1.52997 * 109.47537 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47618 * 175.00054 * 4 3 2 6 6 C 1.53002 * 109.46997 * 54.99640 * 4 3 2 7 7 N 1.46896 * 109.46830 * 185.00217 * 6 4 3 8 8 N 1.46502 * 109.46869 * 294.99831 * 4 3 2 9 9 C 1.39781 * 120.00203 * 204.99573 * 8 4 3 10 10 C 1.38953 * 120.00232 * 0.28154 * 9 8 4 11 11 C 1.38020 * 119.98851 * 180.25377 * 10 9 8 12 12 C 1.38889 * 120.00747 * 359.48928 * 11 10 9 13 13 O 1.35805 * 119.99439 * 180.25657 * 12 11 10 14 14 C 1.34809 * 116.99878 * 354.46043 * 13 12 11 15 15 H 1.08004 * 119.99808 * 5.04935 * 14 13 12 16 16 C 1.38619 * 119.99794 * 185.05711 * 14 13 12 17 17 N 1.31579 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99847 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47249 * 119.99810 * 18 16 14 21 21 H 1.48503 * 109.47022 * 240.00064 * 18 16 14 22 22 C 1.38904 * 120.01578 * 0.23022 * 12 11 10 23 23 C 1.38009 * 120.00109 * 0.02847 * 22 12 11 24 24 H 1.09004 * 109.46863 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46509 * 299.99965 * 1 2 3 26 26 H 1.09000 * 109.46869 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47315 * 59.99734 * 3 2 1 28 28 H 1.09003 * 109.47248 * 300.00119 * 3 2 1 29 29 H 1.08998 * 109.47427 * 305.00456 * 6 4 3 30 30 H 1.08999 * 109.47042 * 65.00525 * 6 4 3 31 31 H 1.00903 * 111.00571 * 56.05210 * 7 6 4 32 32 H 1.00906 * 111.00252 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99760 * 25.00078 * 8 4 3 34 34 H 1.07995 * 120.00933 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.99493 * 179.77004 * 11 10 9 36 36 H 0.96996 * 120.00145 * 180.02562 * 17 16 14 37 37 H 1.07995 * 119.99923 * 180.02562 * 22 12 11 38 38 H 1.07998 * 120.00362 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 -0.0902 6 6 3.9781 0.3196 -1.1826 7 7 5.4297 0.1045 -1.1153 8 7 3.9767 0.5639 1.2509 9 6 5.2671 0.8024 1.7324 10 6 6.1295 1.6328 1.0271 11 6 7.4054 1.8638 1.5001 12 6 7.8237 1.2749 2.6863 13 8 9.0774 1.5067 3.1542 14 6 9.9027 2.2225 2.3644 15 1 9.5325 2.6523 1.4453 16 6 11.2266 2.4067 2.7318 17 7 11.6775 1.8833 3.8517 18 14 12.3705 3.3979 1.6371 19 1 11.6247 3.8742 0.4445 20 1 12.8921 4.5644 2.3936 21 1 13.5040 2.5427 1.2025 22 6 6.9598 0.4495 3.3947 23 6 5.6858 0.2138 2.9194 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.4660 -0.6417 -1.1413 30 1 3.7285 0.8245 -2.1158 31 1 5.6942 -0.3040 -0.2314 32 1 5.7471 -0.4642 -1.8861 33 1 3.3734 -0.0125 1.7454 34 1 5.8028 2.0944 0.1070 35 1 8.0770 2.5063 0.9500 36 1 12.6037 2.0125 4.1090 37 1 7.2852 -0.0080 4.3173 38 1 5.0139 -0.4277 3.4704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708770344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:07 Heat of formation + Delta-G solvation = -57.718138 kcal Electronic energy + Delta-G solvation = -20045.572436 eV Core-core repulsion = 16888.251478 eV Total energy + Delta-G solvation = -3157.320958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81992 -39.62426 -38.38610 -36.57529 -34.26641 -33.69171 -31.63106 -31.34667 -28.32129 -27.26266 -26.87049 -25.33114 -23.88318 -22.63868 -21.10043 -19.75984 -18.95826 -17.88652 -17.44139 -17.00443 -16.60941 -16.29162 -16.09942 -15.89463 -15.67083 -15.28596 -14.90442 -14.86839 -14.34007 -14.10767 -13.69448 -13.42751 -13.26444 -12.94995 -12.89576 -12.68192 -12.53263 -12.33426 -12.11589 -12.05868 -12.02619 -11.00544 -10.90414 -10.60779 -10.18525 -9.66261 -9.39796 -8.36057 -7.84363 -5.98723 0.70453 1.00805 1.38448 1.47475 1.56742 2.25336 2.62510 2.89328 2.97590 3.33307 3.61732 3.74192 4.09282 4.21807 4.22822 4.28119 4.45001 4.47870 4.55954 4.60347 4.66497 4.72168 4.77050 4.88192 4.89952 5.01110 5.13363 5.18690 5.36617 5.61848 5.65943 5.89576 6.05528 6.17197 6.21718 6.31120 6.60001 6.69557 7.09279 7.12328 7.98843 8.88952 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037759 B = 0.003905 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.375759 B = 7167.909251 C = 7626.407192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.158 3.842 5 H 0.088 0.912 6 C 0.053 3.947 7 N -0.857 5.857 8 N -0.739 5.739 9 C 0.147 3.853 10 C -0.112 4.112 11 C -0.196 4.196 12 C 0.065 3.935 13 O -0.244 6.244 14 C -0.401 4.401 15 H 0.097 0.903 16 C -0.030 4.030 17 N -0.928 5.928 18 Si 1.016 2.984 19 H -0.252 1.252 20 H -0.270 1.270 21 H -0.271 1.271 22 C -0.162 4.162 23 C -0.142 4.142 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.341 0.659 32 H 0.340 0.660 33 H 0.402 0.598 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.269 0.731 37 H 0.110 0.890 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.061 -1.926 -11.058 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.018 4.018 4 C 0.052 3.948 5 H 0.106 0.894 6 C -0.079 4.079 7 N -0.388 5.388 8 N -0.374 5.374 9 C 0.047 3.953 10 C -0.134 4.134 11 C -0.216 4.216 12 C 0.016 3.984 13 O -0.153 6.153 14 C -0.478 4.478 15 H 0.115 0.885 16 C -0.226 4.226 17 N -0.569 5.569 18 Si 0.836 3.164 19 H -0.176 1.176 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.182 4.182 23 C -0.165 4.165 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.653 -1.271 -10.992 24.316 hybrid contribution 0.294 -0.699 0.180 0.779 sum -21.359 -1.970 -10.812 24.021 Atomic orbital electron populations 1.22888 0.79677 1.03540 1.00828 1.87871 1.21151 1.27990 1.95586 1.22798 0.91531 0.85234 1.02221 1.21062 0.92501 0.97247 0.83997 0.89396 1.22206 0.88093 0.99057 0.98537 1.58995 1.13686 1.57803 1.08365 1.44275 1.11368 1.56076 1.25674 1.17472 0.86665 0.97531 0.93614 1.20545 0.92142 1.00430 1.00333 1.21022 0.98056 1.04896 0.97619 1.19743 0.86583 0.97336 0.94732 1.83928 1.19518 1.67412 1.44401 1.21781 0.91276 1.29916 1.04827 0.88543 1.26502 0.97975 0.99342 0.98742 1.70212 1.16567 1.45827 1.24269 0.84564 0.77185 0.77195 0.77481 1.17575 1.19518 1.19570 1.20146 0.94368 1.02194 1.01509 1.20374 0.95143 1.04022 0.96914 0.89018 0.93441 0.92963 0.91932 0.90106 0.95113 0.89862 0.84467 0.84778 0.76292 0.84287 0.86993 0.92250 0.87231 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.61 9.46 -148.98 -1.41 -8.02 16 3 C 0.06 0.87 5.68 71.98 0.41 1.28 16 4 C 0.16 3.13 2.67 44.99 0.12 3.25 16 5 H 0.09 1.88 6.47 -2.38 -0.02 1.86 16 6 C 0.05 1.07 6.42 86.30 0.55 1.63 16 7 N -0.86 -21.03 7.64 -186.72 -1.43 -22.46 16 8 N -0.74 -17.48 5.01 -318.79 -1.60 -19.08 16 9 C 0.15 4.67 5.22 38.22 0.20 4.87 16 10 C -0.11 -4.02 7.24 22.39 0.16 -3.86 16 11 C -0.20 -8.88 9.16 22.37 0.20 -8.68 16 12 C 0.07 3.38 6.65 22.59 0.15 3.53 16 13 O -0.24 -15.30 9.76 -23.14 -0.23 -15.53 16 14 C -0.40 -24.33 9.48 67.91 0.64 -23.68 16 15 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 16 C -0.03 -1.77 5.49 84.82 0.47 -1.30 16 17 N -0.93 -59.19 13.67 21.61 0.30 -58.89 16 18 Si 1.02 44.81 29.55 68.60 2.03 46.84 16 19 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C -0.16 -7.15 9.98 22.37 0.22 -6.92 16 23 C -0.14 -4.90 9.89 22.39 0.22 -4.68 16 24 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.03 0.65 7.39 -2.39 -0.02 0.64 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.34 9.81 6.02 -89.69 -0.54 9.27 16 32 H 0.34 7.36 9.08 -89.69 -0.81 6.55 16 33 H 0.40 8.67 8.39 -92.71 -0.78 7.89 16 34 H 0.14 4.48 5.50 -2.91 -0.02 4.47 16 35 H 0.11 5.27 5.63 -2.91 -0.02 5.25 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -72.86 312.27 1.24 -71.62 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -1.03 Total: 38.57 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.60 Total: -33.05 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -2.73 Total: -100.43 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -1.64 Total: -23.55 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.86 1.24 -71.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708770344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds