Wall clock time and date at job start Mon Mar 30 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36874 * 126.39645 * 2 1 4 4 C 1.34672 * 106.81639 * 180.25383 * 3 2 1 5 5 N 1.34123 * 108.02041 * 359.74333 * 4 3 2 6 6 C 1.30506 * 109.25784 * 0.02562 * 5 4 3 7 7 C 1.50695 * 125.65370 * 180.02562 * 6 5 4 8 8 O 1.45201 * 109.47187 * 90.02218 * 7 6 5 9 9 C 1.34222 * 116.99867 * 180.02562 * 8 7 6 10 10 O 1.20830 * 120.00323 * 359.72425 * 9 8 7 11 11 C 1.50706 * 120.00024 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47348 * 179.72254 * 11 9 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 9 14 14 C 1.53008 * 109.46808 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46847 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99722 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47233 * 59.99840 * 19 17 15 21 21 H 1.48492 * 109.47488 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46997 * 300.00237 * 19 17 15 23 23 H 1.08993 * 109.47486 * 270.18507 * 1 2 3 24 24 H 1.08999 * 109.47158 * 30.19057 * 1 2 3 25 25 H 1.09004 * 109.47366 * 150.18451 * 1 2 3 26 26 H 1.08001 * 126.59448 * 359.97368 * 3 2 1 27 27 H 1.08000 * 125.99247 * 179.72076 * 4 3 2 28 28 H 1.09009 * 109.47109 * 330.02504 * 7 6 5 29 29 H 1.09001 * 109.47115 * 210.02436 * 7 6 5 30 30 H 1.09001 * 109.46564 * 299.72723 * 11 9 8 31 31 H 1.08998 * 109.47012 * 59.71777 * 11 9 8 32 32 H 1.09000 * 109.46986 * 300.00089 * 12 11 9 33 33 H 1.09002 * 109.46857 * 60.00224 * 12 11 9 34 34 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 35 35 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 36 36 H 1.08996 * 109.46961 * 299.99496 * 14 13 12 37 37 H 1.08994 * 109.47402 * 59.99882 * 14 13 12 38 38 H 0.96999 * 120.00128 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0057 5 7 3.5095 -0.6903 -0.0034 6 6 2.2663 -1.0870 0.0030 7 6 1.8017 -2.5206 0.0080 8 8 1.6582 -2.9781 1.3785 9 6 1.2492 -4.2437 1.5588 10 8 1.0140 -4.9446 0.6030 11 6 1.0768 -4.7886 2.9533 12 6 0.5996 -6.2403 2.8783 13 6 0.4253 -6.7936 4.2940 14 6 -0.0514 -8.2456 4.2190 15 6 -0.2237 -8.7903 5.6135 16 1 -0.0138 -8.1637 6.4678 17 6 -0.6493 -10.0886 5.7987 18 7 -0.9053 -10.8514 4.7584 19 14 -0.8636 -10.7637 7.5272 20 1 -1.8692 -9.9492 8.2556 21 1 -1.3273 -12.1725 7.4545 22 1 0.4347 -10.7058 8.2457 23 1 -0.3634 0.0033 1.0276 24 1 -0.3633 0.8883 -0.5168 25 1 -0.3634 -0.8916 -0.5110 26 1 1.9613 2.1345 -0.0004 27 1 4.4368 1.2610 -0.0115 28 1 2.5343 -3.1418 -0.5075 29 1 0.8410 -2.5930 -0.5018 30 1 2.0300 -4.7461 3.4802 31 1 0.3390 -4.1907 3.4883 32 1 -0.3536 -6.2827 2.3513 33 1 1.3375 -6.8381 2.3433 34 1 1.3787 -6.7513 4.8207 35 1 -0.3124 -6.1959 4.8294 36 1 -1.0047 -8.2883 3.6923 37 1 0.6865 -8.8430 3.6837 38 1 -1.2044 -11.7649 4.8887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805900085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:19 Heat of formation + Delta-G solvation = -43.945708 kcal Electronic energy + Delta-G solvation = -18959.392099 eV Core-core repulsion = 15802.668358 eV Total energy + Delta-G solvation = -3156.723741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.48079 -40.46410 -36.80850 -34.99255 -34.43274 -32.71011 -31.45865 -29.88107 -27.72197 -26.86473 -25.58097 -22.78629 -21.79275 -20.64251 -20.34539 -20.03589 -17.70085 -17.63049 -16.74337 -16.21064 -16.18292 -15.83019 -15.13438 -14.56965 -14.44273 -14.13119 -13.58221 -13.43412 -13.24567 -13.16408 -12.77977 -12.47496 -12.26690 -11.73436 -11.67749 -11.00302 -10.93184 -10.61569 -10.58897 -10.47358 -10.45638 -10.35284 -10.00793 -9.65324 -9.30041 -9.04235 -8.84511 -8.31493 -5.96428 -3.99118 1.41555 2.21865 2.27298 2.49795 3.08369 3.35151 3.39571 3.41873 3.95906 4.23791 4.33304 4.48285 4.59810 4.69701 4.82500 4.93390 5.04172 5.10414 5.24927 5.26325 5.36259 5.39008 5.70331 5.83322 6.04592 6.17086 6.29343 6.36096 6.45973 6.68720 6.75891 6.93844 7.15608 7.69962 7.71585 7.73752 7.86726 8.04231 8.45890 9.08223 9.64681 11.14862 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.051224 B = 0.002495 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.486192 B =11218.287655 C =11282.810266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.449 5.449 3 C -0.047 4.047 4 C -0.027 4.027 5 N -0.467 5.467 6 C 0.197 3.803 7 C 0.154 3.846 8 O -0.357 6.357 9 C 0.463 3.537 10 O -0.503 6.503 11 C -0.110 4.110 12 C -0.108 4.108 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.179 0.821 27 H 0.174 0.826 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 25.389 -10.453 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.132 5.132 3 C -0.181 4.181 4 C -0.176 4.176 5 N -0.187 5.187 6 C -0.064 4.064 7 C 0.079 3.921 8 O -0.274 6.274 9 C 0.306 3.694 10 O -0.389 6.389 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.196 0.804 27 H 0.192 0.808 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.499 24.469 -10.824 26.984 hybrid contribution -0.881 0.269 0.772 1.202 sum 2.618 24.737 -10.052 26.830 Atomic orbital electron populations 1.22153 0.76202 1.04880 1.04328 1.45315 1.07892 1.06557 1.53472 1.22816 0.91327 0.92568 1.11411 1.22386 0.96658 0.90882 1.07708 1.70240 1.18206 1.12366 1.17914 1.22536 0.86019 0.89703 1.08178 1.20844 1.02229 0.86857 0.82205 1.86596 1.79037 1.31417 1.30319 1.24276 0.72588 0.78763 0.93750 1.90687 1.46322 1.58501 1.43430 1.21633 1.04974 0.98971 0.89220 1.21589 1.01943 0.91017 1.00057 1.21652 1.00406 0.99846 0.92872 1.19094 0.96472 0.89169 0.96951 1.21236 1.44842 0.97246 0.92655 0.92748 1.25038 0.95592 0.97152 0.96767 1.69961 1.46153 1.08012 1.29366 0.86659 0.78502 0.77915 0.84913 1.20288 1.21325 1.20247 0.89829 0.89181 0.89315 0.80408 0.80838 0.87832 0.89671 0.87677 0.87885 0.91524 0.91414 0.93144 0.93225 0.96562 0.96508 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.97 59.85 0.66 0.98 16 2 N -0.45 -3.87 3.15 -121.28 -0.38 -4.26 16 3 C -0.05 -0.37 11.58 -16.56 -0.19 -0.56 16 4 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 5 N -0.47 -6.05 11.25 -10.82 -0.12 -6.17 16 6 C 0.20 2.25 7.54 -155.41 -1.17 1.08 16 7 C 0.15 1.72 5.77 36.00 0.21 1.93 16 8 O -0.36 -4.59 10.20 -39.24 -0.40 -5.00 16 9 C 0.46 6.51 7.96 36.01 0.29 6.79 16 10 O -0.50 -8.40 15.73 -18.75 -0.30 -8.69 16 11 C -0.11 -1.46 5.81 -27.88 -0.16 -1.62 16 12 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 13 C -0.11 -2.21 5.15 -26.73 -0.14 -2.34 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.38 7.04 -51.93 -0.37 0.01 16 26 H 0.18 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 29 H 0.09 0.78 7.05 -51.93 -0.37 0.41 16 30 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -35.28 330.91 -7.66 -42.94 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -5.76 Total: -4.50 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.39 Total: -9.50 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.23 Total: -37.03 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.70 Total: -13.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.28 -7.66 -42.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805900085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.007 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds