Wall clock time and date at job start Mon Mar 30 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36874 * 126.39645 * 2 1 4 4 C 1.34672 * 106.81639 * 180.25383 * 3 2 1 5 5 N 1.34123 * 108.02041 * 359.74333 * 4 3 2 6 6 C 1.30506 * 109.25784 * 0.02562 * 5 4 3 7 7 C 1.50695 * 125.65370 * 180.02562 * 6 5 4 8 8 O 1.45201 * 109.47187 * 90.02218 * 7 6 5 9 9 C 1.34222 * 116.99867 * 180.02562 * 8 7 6 10 10 O 1.20830 * 120.00323 * 359.72425 * 9 8 7 11 11 C 1.50706 * 120.00024 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47348 * 179.72254 * 11 9 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 9 14 14 C 1.53008 * 109.46808 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46847 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99722 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47233 * 59.99840 * 19 17 15 21 21 H 1.48492 * 109.47488 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46997 * 300.00237 * 19 17 15 23 23 H 1.08993 * 109.47486 * 270.18507 * 1 2 3 24 24 H 1.08999 * 109.47158 * 30.19057 * 1 2 3 25 25 H 1.09004 * 109.47366 * 150.18451 * 1 2 3 26 26 H 1.08001 * 126.59448 * 359.97368 * 3 2 1 27 27 H 1.08000 * 125.99247 * 179.72076 * 4 3 2 28 28 H 1.09009 * 109.47109 * 330.02504 * 7 6 5 29 29 H 1.09001 * 109.47115 * 210.02436 * 7 6 5 30 30 H 1.09001 * 109.46564 * 299.72723 * 11 9 8 31 31 H 1.08998 * 109.47012 * 59.71777 * 11 9 8 32 32 H 1.09000 * 109.46986 * 300.00089 * 12 11 9 33 33 H 1.09002 * 109.46857 * 60.00224 * 12 11 9 34 34 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 35 35 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 36 36 H 1.08996 * 109.46961 * 299.99496 * 14 13 12 37 37 H 1.08994 * 109.47402 * 59.99882 * 14 13 12 38 38 H 0.96999 * 120.00128 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0057 5 7 3.5095 -0.6903 -0.0034 6 6 2.2663 -1.0870 0.0030 7 6 1.8017 -2.5206 0.0080 8 8 1.6582 -2.9781 1.3785 9 6 1.2492 -4.2437 1.5588 10 8 1.0140 -4.9446 0.6030 11 6 1.0768 -4.7886 2.9533 12 6 0.5996 -6.2403 2.8783 13 6 0.4253 -6.7936 4.2940 14 6 -0.0514 -8.2456 4.2190 15 6 -0.2237 -8.7903 5.6135 16 1 -0.0138 -8.1637 6.4678 17 6 -0.6493 -10.0886 5.7987 18 7 -0.9053 -10.8514 4.7584 19 14 -0.8636 -10.7637 7.5272 20 1 -1.8692 -9.9492 8.2556 21 1 -1.3273 -12.1725 7.4545 22 1 0.4347 -10.7058 8.2457 23 1 -0.3634 0.0033 1.0276 24 1 -0.3633 0.8883 -0.5168 25 1 -0.3634 -0.8916 -0.5110 26 1 1.9613 2.1345 -0.0004 27 1 4.4368 1.2610 -0.0115 28 1 2.5343 -3.1418 -0.5075 29 1 0.8410 -2.5930 -0.5018 30 1 2.0300 -4.7461 3.4802 31 1 0.3390 -4.1907 3.4883 32 1 -0.3536 -6.2827 2.3513 33 1 1.3375 -6.8381 2.3433 34 1 1.3787 -6.7513 4.8207 35 1 -0.3124 -6.1959 4.8294 36 1 -1.0047 -8.2883 3.6923 37 1 0.6865 -8.8430 3.6837 38 1 -1.2044 -11.7649 4.8887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805900085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:18 Heat of formation + Delta-G solvation = -64.908100 kcal Electronic energy + Delta-G solvation = -18960.301096 eV Core-core repulsion = 15802.668358 eV Total energy + Delta-G solvation = -3157.632739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.16223 -41.55972 -37.92573 -36.62650 -35.04194 -34.66264 -32.38480 -31.45534 -28.46042 -27.82385 -27.00498 -24.47375 -22.44184 -22.10444 -21.48253 -21.07747 -18.77050 -18.40420 -18.31908 -17.79665 -17.11520 -16.56992 -16.43595 -16.26934 -15.44898 -15.00499 -14.56649 -14.43080 -14.33272 -13.95788 -13.75638 -13.66588 -13.56179 -13.42123 -13.16704 -12.80179 -12.38976 -12.18969 -12.18452 -11.92255 -11.70066 -11.37385 -11.29883 -11.09884 -11.06526 -10.67494 -10.52976 -9.52766 -8.17721 -6.29426 0.67218 1.12260 1.41479 1.45046 1.52806 1.56155 1.83626 2.24333 2.43057 3.15205 3.18191 3.65351 3.72486 3.86870 3.98298 4.08741 4.11297 4.19662 4.36235 4.51860 4.55400 4.63853 4.65440 4.70736 4.78563 4.86740 5.15557 5.17817 5.23038 5.33168 5.38780 5.57481 5.73582 5.79297 5.89536 6.06500 6.26649 6.65289 6.88953 6.99763 7.40079 8.94188 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.051224 B = 0.002495 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.486192 B =11218.287655 C =11282.810266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.446 5.446 3 C -0.027 4.027 4 C -0.057 4.057 5 N -0.510 5.510 6 C 0.168 3.832 7 C 0.154 3.846 8 O -0.356 6.356 9 C 0.470 3.530 10 O -0.536 6.536 11 C -0.102 4.102 12 C -0.100 4.100 13 C -0.097 4.097 14 C 0.019 3.981 15 C -0.542 4.542 16 H 0.065 0.935 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.266 1.266 23 H 0.089 0.911 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.220 0.780 27 H 0.191 0.809 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.064 0.936 36 H -0.012 1.012 37 H -0.014 1.014 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 27.812 -9.078 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.129 5.129 3 C -0.162 4.162 4 C -0.206 4.206 5 N -0.232 5.232 6 C -0.092 4.092 7 C 0.079 3.921 8 O -0.272 6.272 9 C 0.315 3.685 10 O -0.425 6.425 11 C -0.139 4.139 12 C -0.138 4.138 13 C -0.134 4.134 14 C -0.018 4.018 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.203 4.203 18 N -0.578 5.578 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.191 1.191 23 H 0.108 0.892 24 H 0.137 0.863 25 H 0.110 0.890 26 H 0.237 0.763 27 H 0.208 0.792 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.996 26.919 -9.443 28.684 hybrid contribution -0.721 -0.402 0.277 0.871 sum 2.274 26.518 -9.165 28.149 Atomic orbital electron populations 1.22463 0.73972 1.06553 1.05258 1.45564 1.09277 1.05958 1.52104 1.23476 0.90470 0.93900 1.08335 1.22866 0.98609 0.90138 1.08975 1.70147 1.19607 1.14362 1.19036 1.22418 0.86366 0.90230 1.10225 1.20920 1.02884 0.87035 0.81219 1.86571 1.78519 1.30524 1.31579 1.24320 0.71744 0.78856 0.93594 1.90683 1.47956 1.59382 1.44510 1.21511 1.06711 0.96382 0.89267 1.21362 1.01124 0.93574 0.97724 1.21442 1.00992 0.95977 0.95005 1.19053 0.94399 0.92913 0.95480 1.21732 1.44594 0.97849 0.93859 0.91645 1.26061 0.95133 0.97635 1.01487 1.70115 1.47143 1.08431 1.32068 0.85463 0.79051 0.77106 0.79200 1.18919 1.21120 1.19056 0.89204 0.86256 0.89043 0.76302 0.79157 0.88977 0.87889 0.85667 0.85035 0.92658 0.93117 0.92057 0.91725 0.99325 0.99541 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.97 127.77 1.40 1.80 16 2 N -0.45 -6.78 3.15 -537.62 -1.69 -8.48 16 3 C -0.03 -0.35 11.58 83.09 0.96 0.61 16 4 C -0.06 -1.06 11.87 83.52 0.99 -0.07 16 5 N -0.51 -13.20 11.25 -188.13 -2.12 -15.31 16 6 C 0.17 3.75 7.54 138.13 1.04 4.79 16 7 C 0.15 3.42 5.77 71.23 0.41 3.84 16 8 O -0.36 -8.84 10.20 -51.34 -0.52 -9.36 16 9 C 0.47 12.83 7.96 71.24 0.57 13.40 16 10 O -0.54 -18.04 15.73 21.95 0.35 -17.70 16 11 C -0.10 -2.49 5.81 29.85 0.17 -2.32 16 12 C -0.10 -3.39 4.50 30.59 0.14 -3.25 16 13 C -0.10 -3.81 5.15 30.60 0.16 -3.65 16 14 C 0.02 1.00 4.97 29.85 0.15 1.15 16 15 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 19 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.09 0.59 7.04 -2.39 -0.02 0.57 16 26 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 27 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.10 1.84 7.05 -2.39 -0.02 1.82 16 30 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 33 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -78.45 330.91 6.04 -72.40 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.03 Total: 4.46 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 6.69 Total: -14.42 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.53 Total: -81.94 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.18 Total: -27.06 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -78.45 6.04 -72.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805900085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.496 kcal (2) G-P(sol) polarization free energy of solvation -78.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds