Wall clock time and date at job start Mon Mar 30 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48504 * 109.46916 * 275.19049 * 3 2 1 5 5 H 1.48494 * 109.47224 * 35.19338 * 3 2 1 6 6 H 1.48504 * 109.46770 * 155.19442 * 3 2 1 7 7 C 1.38804 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00207 * 336.02559 * 7 2 1 9 9 N 1.36941 * 119.99894 * 156.02403 * 7 2 1 10 10 C 1.46495 * 119.99981 * 322.24250 * 9 7 2 11 11 C 1.53001 * 109.46950 * 269.99496 * 10 9 7 12 12 C 1.50700 * 109.47076 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00330 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99672 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99870 * 180.02562 * 14 12 11 16 16 C 1.52998 * 117.49622 * 223.62514 * 15 14 12 17 17 C 1.52989 * 117.50095 * 155.00159 * 15 14 12 18 18 C 1.46507 * 119.99972 * 142.23621 * 9 7 2 19 19 C 1.54259 * 110.03058 * 298.07781 * 18 9 7 20 20 C 1.54965 * 104.16095 * 95.75929 * 19 18 9 21 21 C 1.54883 * 102.77976 * 37.88108 * 20 19 18 22 22 C 1.53872 * 110.03019 * 55.29585 * 18 9 7 23 23 H 0.97000 * 119.99930 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 29.99376 * 10 9 7 25 25 H 1.09003 * 109.47641 * 150.00175 * 10 9 7 26 26 H 1.09000 * 109.47692 * 299.99959 * 11 10 9 27 27 H 1.09007 * 109.47007 * 60.00292 * 11 10 9 28 28 H 0.96992 * 120.00750 * 359.97438 * 14 12 11 29 29 H 1.09000 * 115.54688 * 9.32560 * 15 14 12 30 30 H 1.08998 * 117.49905 * 359.97438 * 16 15 14 31 31 H 1.09002 * 117.49655 * 145.01823 * 16 15 14 32 32 H 1.09007 * 117.50169 * 214.98044 * 17 15 14 33 33 H 1.08998 * 117.50047 * 359.97220 * 17 15 14 34 34 H 1.08996 * 110.01145 * 176.68441 * 18 9 7 35 35 H 1.09005 * 110.48320 * 214.39519 * 19 18 9 36 36 H 1.08993 * 110.49124 * 337.04327 * 19 18 9 37 37 H 1.09007 * 110.71721 * 279.56837 * 20 19 18 38 38 H 1.08994 * 110.92698 * 156.29695 * 20 19 18 39 39 H 1.08999 * 110.48970 * 203.40831 * 21 20 19 40 40 H 1.09003 * 110.59782 * 80.82140 * 21 20 19 41 41 H 1.09001 * 110.03393 * 359.95106 * 22 18 9 42 42 H 1.09004 * 110.03220 * 121.37748 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3880 2.1098 -1.3944 5 1 1.5068 2.6185 0.8069 6 1 3.5983 1.4110 0.5874 7 6 2.0102 -1.2021 0.0005 8 1 1.5401 -2.0969 0.3810 9 7 3.2910 -1.2535 -0.4814 10 6 3.6652 -0.4578 -1.6531 11 6 3.4273 -1.2772 -2.9231 12 6 3.8116 -0.4585 -4.1285 13 8 4.2347 0.6691 -3.9859 14 7 3.6852 -0.9795 -5.3651 15 6 4.0594 -0.1838 -6.5370 16 6 3.1155 -0.2121 -7.7407 17 6 4.4599 -0.9395 -7.8054 18 6 4.2871 -2.1041 0.1750 19 6 4.5038 -1.6381 1.6294 20 6 3.5720 -2.5531 2.4636 21 6 3.7005 -3.9192 1.7451 22 6 3.7761 -3.5537 0.2482 23 1 -0.4850 0.8400 -0.0004 24 1 3.0593 0.4477 -1.6861 25 1 4.7192 -0.1876 -1.5874 26 1 4.0332 -2.1827 -2.8902 27 1 2.3733 -1.5475 -2.9889 28 1 3.3472 -1.8814 -5.4792 29 1 4.5762 0.7520 -6.3242 30 1 2.2163 -0.8231 -7.6610 31 1 3.0112 0.7052 -8.3202 32 1 5.2402 -0.5008 -8.4275 33 1 4.4455 -2.0288 -7.7680 34 1 5.2284 -2.0673 -0.3732 35 1 5.5432 -1.7814 1.9250 36 1 4.2147 -0.5933 1.7424 37 1 2.5440 -2.1926 2.4271 38 1 3.9181 -2.6249 3.4947 39 1 2.8254 -4.5381 1.9429 40 1 4.6090 -4.4334 2.0586 41 1 2.7867 -3.6241 -0.2037 42 1 4.4695 -4.2204 -0.2644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:43 Heat of formation + Delta-G solvation = 0.456917 kcal Electronic energy + Delta-G solvation = -20925.870618 eV Core-core repulsion = 17906.905413 eV Total energy + Delta-G solvation = -3018.965204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.55457 -37.95598 -37.01142 -34.45855 -32.69850 -31.66613 -29.77367 -27.87428 -26.93610 -24.48253 -22.53696 -22.41081 -21.34923 -20.27380 -19.75846 -18.88235 -17.02208 -16.39710 -16.14748 -15.53493 -15.20122 -14.71325 -14.55016 -14.22904 -13.66970 -13.37972 -12.93799 -12.76128 -12.57493 -12.18642 -11.91729 -11.75737 -11.61673 -11.26552 -11.03448 -10.72540 -10.66087 -10.54466 -10.39522 -10.34261 -10.16671 -9.88866 -9.85058 -9.59451 -9.53332 -9.31312 -8.66935 -8.39928 -6.77751 -5.96364 -3.36325 2.91670 3.25450 3.46940 3.57231 3.62742 3.84056 4.60597 4.67677 4.83912 4.86259 4.87972 5.30621 5.35802 5.41301 5.44532 5.48754 5.66857 5.71059 5.80167 5.84890 5.90935 5.99723 6.12208 6.26767 6.32467 6.34765 6.43033 6.49694 6.57591 6.61104 6.67328 6.71432 6.76769 6.92459 7.08554 7.10525 7.24922 7.67373 8.10634 8.44880 8.52071 9.05745 9.77734 10.18375 11.18593 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.005771 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.096558 B = 4850.699083 C = 5666.042748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.040 3.960 3 Si 0.865 3.135 4 H -0.281 1.281 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.261 4.261 8 H 0.083 0.917 9 N -0.598 5.598 10 C 0.153 3.847 11 C -0.154 4.154 12 C 0.519 3.481 13 O -0.542 6.542 14 N -0.711 5.711 15 C 0.083 3.917 16 C -0.197 4.197 17 C -0.193 4.193 18 C 0.170 3.830 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.132 4.132 23 H 0.262 0.738 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.401 0.599 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -6.021 -9.110 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.161 4.161 3 Si 0.695 3.305 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.100 0.900 9 N -0.319 5.319 10 C 0.027 3.973 11 C -0.197 4.197 12 C 0.307 3.693 13 O -0.418 6.418 14 N -0.363 5.363 15 C -0.024 4.024 16 C -0.236 4.236 17 C -0.231 4.231 18 C 0.063 3.937 19 C -0.172 4.172 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.171 4.171 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.235 0.765 29 H 0.153 0.847 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.551 -5.101 -8.932 13.376 hybrid contribution 0.144 0.503 -0.243 0.577 sum 8.695 -4.598 -9.174 13.450 Atomic orbital electron populations 1.69887 1.06012 1.26660 1.51373 1.25440 0.94957 0.97592 0.98101 0.87115 0.80764 0.85133 0.77484 1.20836 1.23209 1.19274 1.18626 0.87041 0.94338 1.38913 0.89989 1.44316 1.08542 1.51641 1.27376 1.20959 0.98384 0.93649 0.84310 1.22415 1.04122 0.99916 0.93207 1.21344 0.76158 0.87560 0.84190 1.90659 1.45275 1.19622 1.86256 1.45602 1.67559 1.17973 1.05120 1.21557 1.01944 0.97806 0.81053 1.23409 0.94392 1.03156 1.02599 1.23349 0.98858 0.99774 1.01158 1.21068 0.90779 0.89970 0.91866 1.22768 0.96959 1.00498 0.96934 1.22439 1.01607 0.94823 0.96570 1.22245 0.99751 0.97311 0.96269 1.22589 1.01969 0.96980 0.95604 0.92835 0.91914 0.93753 0.89762 0.88113 0.76518 0.84730 0.88494 0.88226 0.88170 0.88600 0.93104 0.93648 0.91291 0.90039 0.93695 0.92801 0.93243 0.90373 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.97 55.49 0.78 -26.09 16 2 C 0.04 1.12 5.27 -17.43 -0.09 1.03 16 3 Si 0.87 22.75 25.19 -169.99 -4.28 18.47 16 4 H -0.28 -7.58 6.64 56.52 0.38 -7.21 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 6 H -0.27 -6.94 7.08 56.52 0.40 -6.53 16 7 C -0.26 -6.81 7.77 -15.06 -0.12 -6.92 16 8 H 0.08 2.30 6.83 -52.49 -0.36 1.94 16 9 N -0.60 -13.44 1.96 -164.40 -0.32 -13.76 16 10 C 0.15 3.37 3.78 -4.04 -0.02 3.36 16 11 C -0.15 -2.78 6.02 -27.88 -0.17 -2.94 16 12 C 0.52 9.22 7.83 -10.98 -0.09 9.14 16 13 O -0.54 -11.74 15.55 5.56 0.09 -11.65 16 14 N -0.71 -9.61 5.57 -53.81 -0.30 -9.91 16 15 C 0.08 1.02 6.43 -67.93 -0.44 0.58 16 16 C -0.20 -1.95 10.46 -26.73 -0.28 -2.23 16 17 C -0.19 -1.74 10.45 -26.74 -0.28 -2.02 16 18 C 0.17 3.27 3.47 -66.81 -0.23 3.04 16 19 C -0.13 -2.50 6.16 -25.03 -0.15 -2.65 16 20 C -0.12 -2.10 6.56 -24.70 -0.16 -2.26 16 21 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 22 C -0.13 -2.30 6.15 -25.61 -0.16 -2.45 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.06 1.59 3.38 -51.93 -0.18 1.41 16 25 H 0.04 0.95 7.92 -51.93 -0.41 0.53 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 28 H 0.40 4.28 8.83 -40.82 -0.36 3.92 16 29 H 0.14 1.87 7.40 -51.93 -0.38 1.48 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.90 7.86 -51.93 -0.41 0.50 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.50 8.02 -51.93 -0.42 1.08 16 37 H 0.08 1.70 7.13 -51.93 -0.37 1.33 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.53 6.73 -51.93 -0.35 1.18 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -31.17 332.22 -8.43 -39.61 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.05 Total: 4.75 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.35 Total: -6.42 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.15 Total: -49.77 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.28 Total: 18.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.17 -8.43 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.063 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds