Wall clock time and date at job start Mon Mar 30 2020 05:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48504 * 109.46916 * 275.19049 * 3 2 1 5 5 H 1.48494 * 109.47224 * 35.19338 * 3 2 1 6 6 H 1.48504 * 109.46770 * 155.19442 * 3 2 1 7 7 C 1.38804 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00207 * 336.02559 * 7 2 1 9 9 N 1.36941 * 119.99894 * 156.02403 * 7 2 1 10 10 C 1.46495 * 119.99981 * 322.24250 * 9 7 2 11 11 C 1.53001 * 109.46950 * 269.99496 * 10 9 7 12 12 C 1.50700 * 109.47076 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00330 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99672 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99870 * 180.02562 * 14 12 11 16 16 C 1.52998 * 117.49622 * 223.62514 * 15 14 12 17 17 C 1.52989 * 117.50095 * 155.00159 * 15 14 12 18 18 C 1.46507 * 119.99972 * 142.23621 * 9 7 2 19 19 C 1.54259 * 110.03058 * 298.07781 * 18 9 7 20 20 C 1.54965 * 104.16095 * 95.75929 * 19 18 9 21 21 C 1.54883 * 102.77976 * 37.88108 * 20 19 18 22 22 C 1.53872 * 110.03019 * 55.29585 * 18 9 7 23 23 H 0.97000 * 119.99930 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 29.99376 * 10 9 7 25 25 H 1.09003 * 109.47641 * 150.00175 * 10 9 7 26 26 H 1.09000 * 109.47692 * 299.99959 * 11 10 9 27 27 H 1.09007 * 109.47007 * 60.00292 * 11 10 9 28 28 H 0.96992 * 120.00750 * 359.97438 * 14 12 11 29 29 H 1.09000 * 115.54688 * 9.32560 * 15 14 12 30 30 H 1.08998 * 117.49905 * 359.97438 * 16 15 14 31 31 H 1.09002 * 117.49655 * 145.01823 * 16 15 14 32 32 H 1.09007 * 117.50169 * 214.98044 * 17 15 14 33 33 H 1.08998 * 117.50047 * 359.97220 * 17 15 14 34 34 H 1.08996 * 110.01145 * 176.68441 * 18 9 7 35 35 H 1.09005 * 110.48320 * 214.39519 * 19 18 9 36 36 H 1.08993 * 110.49124 * 337.04327 * 19 18 9 37 37 H 1.09007 * 110.71721 * 279.56837 * 20 19 18 38 38 H 1.08994 * 110.92698 * 156.29695 * 20 19 18 39 39 H 1.08999 * 110.48970 * 203.40831 * 21 20 19 40 40 H 1.09003 * 110.59782 * 80.82140 * 21 20 19 41 41 H 1.09001 * 110.03393 * 359.95106 * 22 18 9 42 42 H 1.09004 * 110.03220 * 121.37748 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3880 2.1098 -1.3944 5 1 1.5068 2.6185 0.8069 6 1 3.5983 1.4110 0.5874 7 6 2.0102 -1.2021 0.0005 8 1 1.5401 -2.0969 0.3810 9 7 3.2910 -1.2535 -0.4814 10 6 3.6652 -0.4578 -1.6531 11 6 3.4273 -1.2772 -2.9231 12 6 3.8116 -0.4585 -4.1285 13 8 4.2347 0.6691 -3.9859 14 7 3.6852 -0.9795 -5.3651 15 6 4.0594 -0.1838 -6.5370 16 6 3.1155 -0.2121 -7.7407 17 6 4.4599 -0.9395 -7.8054 18 6 4.2871 -2.1041 0.1750 19 6 4.5038 -1.6381 1.6294 20 6 3.5720 -2.5531 2.4636 21 6 3.7005 -3.9192 1.7451 22 6 3.7761 -3.5537 0.2482 23 1 -0.4850 0.8400 -0.0004 24 1 3.0593 0.4477 -1.6861 25 1 4.7192 -0.1876 -1.5874 26 1 4.0332 -2.1827 -2.8902 27 1 2.3733 -1.5475 -2.9889 28 1 3.3472 -1.8814 -5.4792 29 1 4.5762 0.7520 -6.3242 30 1 2.2163 -0.8231 -7.6610 31 1 3.0112 0.7052 -8.3202 32 1 5.2402 -0.5008 -8.4275 33 1 4.4455 -2.0288 -7.7680 34 1 5.2284 -2.0673 -0.3732 35 1 5.5432 -1.7814 1.9250 36 1 4.2147 -0.5933 1.7424 37 1 2.5440 -2.1926 2.4271 38 1 3.9181 -2.6249 3.4947 39 1 2.8254 -4.5381 1.9429 40 1 4.6090 -4.4334 2.0586 41 1 2.7867 -3.6241 -0.2037 42 1 4.4695 -4.2204 -0.2644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:42 Heat of formation + Delta-G solvation = -19.609860 kcal Electronic energy + Delta-G solvation = -20926.740778 eV Core-core repulsion = 17906.905413 eV Total energy + Delta-G solvation = -3019.835365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89201 -39.50556 -38.07108 -36.15274 -34.01421 -33.62016 -31.34771 -29.30351 -28.59548 -26.21889 -24.03321 -23.27622 -22.57591 -21.61394 -21.14441 -20.57709 -18.57871 -17.92809 -17.48637 -17.23993 -16.77860 -16.27241 -15.82623 -15.52749 -15.11491 -15.07798 -14.57795 -14.21425 -14.05085 -13.67015 -13.58661 -13.32659 -12.84216 -12.67606 -12.48819 -12.34180 -12.23295 -11.95983 -11.79886 -11.72047 -11.64917 -11.48850 -11.44486 -11.32440 -11.08433 -10.91327 -10.53053 -9.74082 -8.68880 -8.16690 -5.48732 1.31442 1.38835 1.46489 1.56303 2.10047 2.44372 2.98406 3.08489 3.35229 3.79230 3.95824 3.99716 4.03579 4.06501 4.08292 4.20071 4.31284 4.38162 4.69996 4.74731 4.74847 4.82558 4.84919 4.95780 5.00192 5.01913 5.02282 5.07348 5.17316 5.20023 5.22192 5.30797 5.33767 5.53654 5.58196 5.60949 5.79647 6.02326 6.31248 6.51069 7.06741 7.23967 7.72606 8.15020 9.02841 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.005771 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.096558 B = 4850.699083 C = 5666.042748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.297 1.297 5 H -0.314 1.314 6 H -0.264 1.264 7 C -0.216 4.216 8 H 0.062 0.938 9 N -0.606 5.606 10 C 0.150 3.850 11 C -0.140 4.140 12 C 0.518 3.482 13 O -0.589 6.589 14 N -0.692 5.692 15 C 0.043 3.957 16 C -0.190 4.190 17 C -0.162 4.162 18 C 0.160 3.840 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.126 4.126 23 H 0.257 0.743 24 H 0.026 0.974 25 H 0.051 0.949 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.416 0.584 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.718 -8.457 -10.370 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.225 1.225 5 H -0.243 1.243 6 H -0.188 1.188 7 C -0.347 4.347 8 H 0.080 0.920 9 N -0.328 5.328 10 C 0.024 3.976 11 C -0.182 4.182 12 C 0.306 3.694 13 O -0.470 6.470 14 N -0.342 5.342 15 C -0.063 4.063 16 C -0.228 4.228 17 C -0.199 4.199 18 C 0.054 3.946 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.165 4.165 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.136 0.864 27 H 0.109 0.891 28 H 0.254 0.746 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.903 -7.587 -10.232 16.767 hybrid contribution -0.490 1.173 0.088 1.274 sum 10.414 -6.415 -10.144 15.890 Atomic orbital electron populations 1.69962 1.07034 1.26607 1.55189 1.25819 0.95259 0.99464 1.00094 0.86357 0.79896 0.83174 0.76153 1.22531 1.24284 1.18813 1.18502 0.88116 0.92794 1.35238 0.92042 1.44440 1.08083 1.51991 1.28249 1.20859 0.97862 0.92933 0.85934 1.22133 1.04076 1.00312 0.91714 1.21190 0.75984 0.86803 0.85398 1.90644 1.47864 1.21456 1.87011 1.45343 1.66021 1.18594 1.04291 1.21662 1.04878 0.98177 0.81557 1.23493 0.95048 1.03903 1.00358 1.23448 0.98404 1.00523 0.97574 1.21389 0.90850 0.90287 0.92060 1.22772 0.98992 0.98444 0.97043 1.22388 0.99090 0.95817 0.98246 1.22232 1.01431 0.96210 0.94953 1.22497 1.01104 0.96115 0.96761 0.93343 0.95564 0.93088 0.86414 0.89147 0.74643 0.87019 0.87943 0.87414 0.86584 0.86896 0.90718 0.90362 0.94857 0.94101 0.91396 0.92694 0.89999 0.93158 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.68 13.97 21.65 0.30 -58.38 16 2 C -0.01 -0.60 5.27 84.86 0.45 -0.15 16 3 Si 0.91 49.27 25.19 68.60 1.73 51.00 16 4 H -0.30 -16.62 6.64 99.48 0.66 -15.96 16 5 H -0.31 -17.19 7.11 99.48 0.71 -16.48 16 6 H -0.26 -13.77 7.08 99.48 0.70 -13.07 16 7 C -0.22 -11.52 7.77 84.03 0.65 -10.86 16 8 H 0.06 3.54 6.83 -2.91 -0.02 3.52 16 9 N -0.61 -26.96 1.96 -674.03 -1.32 -28.29 16 10 C 0.15 6.57 3.78 86.38 0.33 6.89 16 11 C -0.14 -4.90 6.02 29.85 0.18 -4.72 16 12 C 0.52 18.12 7.83 87.66 0.69 18.81 16 13 O -0.59 -25.97 15.55 -3.02 -0.05 -26.02 16 14 N -0.69 -17.61 5.57 -442.54 -2.46 -20.08 16 15 C 0.04 1.00 6.43 44.99 0.29 1.29 16 16 C -0.19 -3.30 10.46 30.59 0.32 -2.98 16 17 C -0.16 -2.37 10.45 30.59 0.32 -2.05 16 18 C 0.16 5.76 3.47 45.71 0.16 5.91 16 19 C -0.13 -4.78 6.16 31.69 0.20 -4.58 16 20 C -0.12 -4.03 6.56 31.91 0.21 -3.82 16 21 C -0.11 -3.21 6.83 31.67 0.22 -3.00 16 22 C -0.13 -3.98 6.15 31.32 0.19 -3.79 16 23 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.03 1.36 3.38 -2.39 -0.01 1.35 16 25 H 0.05 2.14 7.92 -2.39 -0.02 2.12 16 26 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 28 H 0.42 7.82 8.83 -92.71 -0.82 7.01 16 29 H 0.11 3.13 7.40 -2.39 -0.02 3.11 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 2.36 7.86 -2.39 -0.02 2.35 16 35 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 36 H 0.03 1.42 8.02 -2.39 -0.02 1.40 16 37 H 0.04 1.71 7.13 -2.38 -0.02 1.70 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.88 6.73 -2.39 -0.02 1.87 16 42 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -71.32 332.22 2.53 -68.80 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.13 Total: 16.01 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.19 Total: -3.05 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.48 Total: -106.74 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 1.73 Total: 51.00 kcal Total: -71.32 2.53 -68.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.189 kcal (2) G-P(sol) polarization free energy of solvation -71.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds