Wall clock time and date at job start Mon Mar 30 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99655 * 2 1 4 4 H 1.48497 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47218 * 299.99502 * 3 2 1 6 6 H 1.48502 * 109.47260 * 59.99640 * 3 2 1 7 7 C 1.38944 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00207 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99927 * 180.27954 * 9 7 2 11 11 O 1.21291 * 120.00293 * 359.72010 * 10 9 7 12 12 C 1.50697 * 119.99872 * 179.72434 * 10 9 7 13 13 N 1.46906 * 109.47279 * 186.12496 * 12 10 9 14 14 C 1.47946 * 111.00083 * 176.62968 * 13 12 10 15 15 C 1.54134 * 107.04036 * 214.28247 * 14 13 12 16 16 C 1.53963 * 104.97835 * 1.61662 * 15 14 13 17 17 C 1.48649 * 111.00071 * 59.11328 * 13 12 10 18 18 C 1.52235 * 110.51366 * 263.09507 * 16 15 14 19 19 C 1.53129 * 109.55741 * 295.14330 * 18 16 15 20 20 C 1.52999 * 109.39886 * 301.16881 * 19 18 16 21 21 C 1.53009 * 109.59370 * 60.53591 * 20 19 18 22 22 C 1.52236 * 110.49929 * 139.57823 * 16 15 14 23 23 H 0.96994 * 120.00392 * 0.02562 * 1 2 3 24 24 H 0.96994 * 119.99795 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.47751 * 306.12292 * 12 10 9 26 26 H 1.09005 * 109.47494 * 66.12638 * 12 10 9 27 27 H 1.09002 * 109.92303 * 333.62527 * 14 13 12 28 28 H 1.09004 * 109.92366 * 94.93531 * 14 13 12 29 29 H 1.08996 * 110.33930 * 120.49143 * 15 14 13 30 30 H 1.09003 * 110.33892 * 242.63758 * 15 14 13 31 31 H 1.09001 * 110.67358 * 277.50027 * 17 13 12 32 32 H 1.09004 * 110.66746 * 40.64238 * 17 13 12 33 33 H 1.08996 * 109.44976 * 55.16624 * 18 16 15 34 34 H 1.08997 * 109.45569 * 175.11377 * 18 16 15 35 35 H 1.08998 * 109.48015 * 181.18712 * 19 18 16 36 36 H 1.09001 * 109.48323 * 61.14812 * 19 18 16 37 37 H 1.09000 * 109.45128 * 300.49754 * 20 19 18 38 38 H 1.09005 * 109.43128 * 180.56109 * 20 19 18 39 39 H 1.08998 * 109.48344 * 179.48786 * 21 20 19 40 40 H 1.08995 * 109.48817 * 59.43207 * 21 20 19 41 41 H 1.08997 * 109.45590 * 184.87731 * 22 16 15 42 42 H 1.09003 * 109.45433 * 304.84356 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8892 2.3966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0068 11 8 3.2103 -3.5578 0.0072 12 6 1.2439 -4.8628 0.0130 13 7 2.1916 -5.9747 0.1669 14 6 1.4804 -7.2688 0.2581 15 6 2.2895 -8.1621 1.2190 16 6 3.4627 -7.2820 1.6876 17 6 2.9650 -5.8446 1.4297 18 6 4.7080 -7.5681 0.8599 19 6 5.1698 -9.0067 1.1090 20 6 5.4641 -9.1951 2.5986 21 6 4.1938 -8.9319 3.4099 22 6 3.7277 -7.4928 3.1718 23 1 -0.4850 0.8400 -0.0004 24 1 0.3535 -2.3907 0.0005 25 1 0.5372 -4.8705 0.8428 26 1 0.7024 -4.9744 -0.9264 27 1 0.4761 -7.1137 0.6524 28 1 1.4282 -7.7342 -0.7262 29 1 1.6749 -8.4581 2.0691 30 1 2.6604 -9.0432 0.6953 31 1 3.8061 -5.1641 1.2974 32 1 2.3210 -5.5088 2.2424 33 1 4.4785 -7.4384 -0.1977 34 1 5.5010 -6.8774 1.1465 35 1 6.0734 -9.2034 0.5321 36 1 4.3850 -9.6985 0.8031 37 1 6.2424 -8.4967 2.9060 38 1 5.8024 -10.2162 2.7750 39 1 4.4031 -9.0755 4.4699 40 1 3.4122 -9.6239 3.0964 41 1 4.5014 -6.8008 3.5043 42 1 2.8115 -7.3104 3.7336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129939085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:18 Heat of formation + Delta-G solvation = -73.040811 kcal Electronic energy + Delta-G solvation = -21002.038383 eV Core-core repulsion = 17979.886078 eV Total energy + Delta-G solvation = -3022.152305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36108 -39.93710 -37.41948 -35.91520 -33.38721 -32.82524 -31.70821 -30.55968 -28.52552 -26.62259 -25.30303 -23.50022 -22.47514 -21.75435 -20.96472 -19.87072 -19.22888 -17.72047 -16.89856 -16.73827 -16.40841 -16.11861 -15.70019 -15.49241 -14.94542 -14.78363 -14.61635 -14.34247 -13.91876 -13.68554 -13.53572 -13.14368 -13.06431 -12.91883 -12.83952 -12.42428 -12.39087 -12.20815 -12.10271 -11.98389 -11.83829 -11.67948 -11.49308 -11.04430 -10.82684 -10.81806 -10.26440 -10.02007 -9.26698 -8.48226 -5.97024 1.35037 1.40070 1.54551 2.03033 2.27592 2.87773 3.18379 3.34973 3.57377 3.74452 3.85621 4.09117 4.21423 4.28937 4.32079 4.34246 4.41540 4.47101 4.52835 4.56153 4.65632 4.68696 4.79390 4.84261 4.93158 4.96448 5.01944 5.14522 5.18759 5.29696 5.30788 5.33584 5.39153 5.41383 5.46542 5.61376 5.66771 5.88735 6.00907 6.15454 6.59235 7.11451 7.54168 8.10354 8.69676 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034834 B = 0.004073 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.623448 B = 6872.355359 C = 7203.602828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.614 6.614 12 C 0.049 3.951 13 N -0.512 5.512 14 C 0.031 3.969 15 C -0.111 4.111 16 C -0.052 4.052 17 C 0.051 3.949 18 C -0.095 4.095 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.105 4.105 23 H 0.278 0.722 24 H 0.395 0.605 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -19.152 5.216 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.500 6.500 12 C -0.083 4.083 13 N -0.237 5.237 14 C -0.096 4.096 15 C -0.149 4.149 16 C -0.053 4.053 17 C -0.077 4.077 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.148 4.148 22 C -0.143 4.143 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.557 -18.976 4.745 19.881 hybrid contribution -0.770 1.528 0.491 1.780 sum 2.787 -17.449 5.236 18.429 Atomic orbital electron populations 1.69679 1.06844 1.29245 1.50466 1.26040 0.96545 1.02388 0.96263 0.84869 0.77978 0.77068 0.78403 1.19879 1.19480 1.19505 1.19690 0.92638 0.83996 1.49855 0.90430 1.41940 1.09258 1.04710 1.65290 1.20739 0.88319 0.85939 0.82287 1.90470 1.15628 1.87786 1.56094 1.21963 0.93915 0.89098 1.03326 1.64491 1.22332 1.01175 1.35674 1.23067 0.96385 0.89216 1.00978 1.22482 0.95532 0.98017 0.98871 1.20901 0.95842 0.92714 0.95851 1.23175 0.97494 0.97845 0.89205 1.21258 0.95659 0.97194 0.99180 1.21578 1.01275 0.95476 0.96767 1.21536 0.97547 1.01743 0.94748 1.21519 0.97902 0.95262 1.00136 1.21442 1.00950 0.98111 0.93831 0.91281 0.77093 0.91866 0.87378 0.92964 0.89578 0.90044 0.89164 0.92264 0.95618 0.92899 0.94174 0.91826 0.90731 0.93001 0.90591 0.91194 0.90780 0.93249 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 2 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -30.54 5.29 -307.00 -1.62 -32.16 16 10 C 0.44 21.92 7.41 87.66 0.65 22.57 16 11 O -0.61 -35.18 13.87 -3.06 -0.04 -35.22 16 12 C 0.05 1.81 5.30 85.55 0.45 2.26 16 13 N -0.51 -17.75 5.05 -888.17 -4.49 -22.24 16 14 C 0.03 0.77 6.71 86.49 0.58 1.35 16 15 C -0.11 -2.31 4.99 31.30 0.16 -2.15 16 16 C -0.05 -1.34 0.56 -51.93 -0.03 -1.37 16 17 C 0.05 1.79 4.44 86.40 0.38 2.17 16 18 C -0.10 -2.48 4.65 30.38 0.14 -2.34 16 19 C -0.11 -2.12 5.74 30.64 0.18 -1.95 16 20 C -0.12 -1.96 5.90 30.60 0.18 -1.78 16 21 C -0.11 -1.81 5.75 30.64 0.18 -1.63 16 22 C -0.11 -2.32 4.56 30.39 0.14 -2.18 16 23 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 24 H 0.40 19.98 7.90 -92.71 -0.73 19.24 16 25 H 0.06 2.13 7.99 -2.39 -0.02 2.11 16 26 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 27 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 28 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.08 1.43 7.68 -2.39 -0.02 1.42 16 30 H 0.09 1.58 6.12 -2.39 -0.01 1.57 16 31 H 0.06 2.62 6.34 -2.39 -0.02 2.61 16 32 H 0.03 0.92 7.88 -2.38 -0.02 0.90 16 33 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.21 6.44 -2.39 -0.02 1.20 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.05 7.38 -2.39 -0.02 1.04 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -67.24 321.57 0.71 -66.53 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.27 Total: 31.45 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.29 Total: -3.83 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -5.83 Total: -104.69 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.04 Total: -35.22 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.24 0.71 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129939085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.512 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds