Wall clock time and date at job start Mon Mar 30 2020 04:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 C 1.38017 * 120.00039 * 239.99457 * 12 2 1 15 15 N 1.32947 * 119.99796 * 0.02562 * 14 12 2 16 16 C 1.32925 * 119.99704 * 180.02562 * 15 14 12 17 17 N 1.38009 * 119.99831 * 179.97438 * 16 15 14 18 18 N 1.32944 * 120.00255 * 359.97018 * 16 15 14 19 19 C 1.32925 * 119.99824 * 0.02562 * 18 16 15 20 20 N 1.38014 * 120.00018 * 179.97438 * 19 18 16 21 21 C 1.46498 * 120.00056 * 359.97438 * 20 19 18 22 22 C 1.46491 * 120.00028 * 180.02562 * 20 19 18 23 23 N 1.32920 * 119.99868 * 179.72364 * 14 12 2 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 29 29 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 30 30 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 31 31 H 0.97006 * 120.00358 * 0.02562 * 17 16 15 32 32 H 0.96998 * 119.99863 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47271 * 0.02562 * 21 20 19 34 34 H 1.08998 * 109.47033 * 120.00008 * 21 20 19 35 35 H 1.08999 * 109.47528 * 240.00741 * 21 20 19 36 36 H 1.09001 * 109.47665 * 89.99768 * 22 20 19 37 37 H 1.09003 * 109.47292 * 209.99369 * 22 20 19 38 38 H 1.09005 * 109.47440 * 329.99571 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.8119 -0.0199 2.1046 15 7 3.1327 1.2530 1.8944 16 6 3.8974 1.8988 2.7691 17 7 4.2309 3.2200 2.5507 18 7 4.3410 1.2720 3.8543 19 6 4.0201 -0.0008 4.0645 20 7 4.4810 -0.6517 5.1909 21 6 5.3242 0.0599 6.1546 22 6 4.1278 -2.0545 5.4222 23 7 3.2504 -0.6450 3.1926 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9026 -0.5282 -4.4376 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9846 31 1 3.9070 3.6776 1.7590 32 1 4.7886 3.6914 3.1891 33 1 5.4783 1.0844 5.8157 34 1 4.8345 0.0694 7.1283 35 1 6.2870 -0.4445 6.2370 36 1 4.8792 -2.6985 4.9652 37 1 4.0879 -2.2471 6.4943 38 1 3.1537 -2.2618 4.9792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133234616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:20 Heat of formation + Delta-G solvation = 110.002257 kcal Electronic energy + Delta-G solvation = -20790.050469 eV Core-core repulsion = 17704.587915 eV Total energy + Delta-G solvation = -3085.462554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.155 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73477 -37.38784 -36.69029 -34.56467 -32.81322 -31.77696 -31.14292 -29.90998 -27.96522 -26.20203 -25.80922 -25.07106 -22.45186 -21.90479 -19.84706 -18.34271 -17.57260 -16.68713 -15.87375 -15.70171 -15.60426 -15.19539 -14.70036 -14.35977 -14.18660 -13.51859 -13.30142 -13.20397 -12.73757 -12.48954 -12.21211 -12.15652 -11.95397 -11.74681 -11.51615 -11.34845 -11.24367 -10.68918 -10.57101 -10.11300 -9.60316 -9.27465 -8.82405 -8.67812 -8.56445 -8.55599 -7.97490 -7.29533 -6.11839 -4.11989 2.08348 2.15943 2.76231 3.24550 3.36821 3.39192 3.49385 3.72566 4.36399 4.73990 4.87626 5.05207 5.21010 5.29457 5.39112 5.41676 5.68735 5.75341 5.87599 5.97396 6.18963 6.25316 6.27704 6.36105 6.43908 6.57264 6.77075 6.89195 6.99226 7.03141 7.29737 7.48611 7.60339 7.64297 7.96863 8.22211 8.23933 8.55060 8.90930 9.34102 9.49271 11.01107 Molecular weight = 266.16amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.005836 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.399352 B = 4796.343171 C = 5418.357138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.072 0.928 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.262 1.262 11 H -0.295 1.295 12 N -0.541 5.541 13 C 0.111 3.889 14 C 0.652 3.348 15 N -0.669 5.669 16 C 0.647 3.353 17 N -0.817 5.817 18 N -0.695 5.695 19 C 0.646 3.354 20 N -0.591 5.591 21 C 0.101 3.899 22 C 0.107 3.893 23 N -0.680 5.680 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.414 0.586 32 H 0.410 0.590 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 2.974 17.022 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.138 3.862 3 H 0.090 0.910 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.187 1.187 11 H -0.223 1.223 12 N -0.253 5.253 13 C -0.033 4.033 14 C 0.288 3.712 15 N -0.414 5.414 16 C 0.279 3.721 17 N -0.366 5.366 18 N -0.442 5.442 19 C 0.281 3.719 20 N -0.310 5.310 21 C -0.042 4.042 22 C -0.036 4.036 23 N -0.425 5.425 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.245 0.755 32 H 0.240 0.760 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.556 2.705 16.769 17.177 hybrid contribution -0.402 1.052 -0.396 1.194 sum 2.153 3.757 16.373 16.936 Atomic orbital electron populations 1.22490 0.99189 1.01136 0.99199 1.19412 0.89719 0.95306 0.81773 0.91020 1.21187 1.32509 1.14226 0.88433 0.90409 1.24850 0.95707 0.96612 0.95555 1.69884 1.45322 1.40219 0.97933 0.86909 0.80423 0.83889 0.77391 1.20492 1.18677 1.22258 1.46407 1.47484 1.11017 1.20384 1.21441 1.00441 0.80766 1.00643 1.18657 0.84290 0.83912 0.84306 1.68052 1.27914 1.10492 1.34901 1.18653 0.83503 0.86561 0.83364 1.41528 1.57957 1.07836 1.29324 1.67738 1.39369 1.10782 1.26263 1.18482 0.83944 0.84116 0.85383 1.45619 1.53495 1.11684 1.20240 1.21609 0.92870 0.98993 0.90772 1.21536 1.02077 0.79691 1.00321 1.67960 1.26317 1.39958 1.08271 0.92515 0.94846 0.93050 0.92494 0.93182 0.91635 0.91223 0.75470 0.76012 0.88881 0.93035 0.93008 0.93296 0.91887 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.65 37.16 0.32 -3.21 16 2 C 0.24 5.83 2.25 -69.08 -0.16 5.67 16 3 H 0.07 1.86 5.86 -51.93 -0.30 1.56 16 4 C -0.52 -14.67 8.95 -34.44 -0.31 -14.98 16 5 H 0.08 2.39 7.89 -52.49 -0.41 1.97 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 8 Si 0.88 21.58 24.37 -169.99 -4.14 17.43 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 11 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 12 N -0.54 -12.04 2.84 -177.48 -0.50 -12.55 16 13 C 0.11 2.09 9.70 59.85 0.58 2.68 16 14 C 0.65 14.37 8.19 -322.23 -2.64 11.73 16 15 N -0.67 -14.53 9.01 -14.79 -0.13 -14.66 16 16 C 0.65 11.99 8.76 -322.24 -2.82 9.17 16 17 N -0.82 -11.01 9.05 29.84 0.27 -10.74 16 18 N -0.69 -12.43 9.01 -14.79 -0.13 -12.57 16 19 C 0.65 11.73 8.19 -322.22 -2.64 9.09 16 20 N -0.59 -8.36 3.36 -191.77 -0.64 -9.00 16 21 C 0.10 1.07 10.71 59.85 0.64 1.71 16 22 C 0.11 1.22 10.50 59.84 0.63 1.85 16 23 N -0.68 -13.58 7.99 -14.79 -0.12 -13.69 16 24 H 0.06 1.16 6.66 -51.93 -0.35 0.82 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.11 7.36 -51.93 -0.38 0.73 16 30 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 31 H 0.41 5.14 8.95 -40.82 -0.37 4.77 16 32 H 0.41 4.27 8.95 -40.82 -0.37 3.90 16 33 H 0.09 1.09 6.80 -51.93 -0.35 0.74 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.08 1.04 7.36 -51.93 -0.38 0.66 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -33.54 308.07 -11.61 -45.15 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.13 Total: 6.51 kcal Atomic # 6 Polarization: 32.26 SS G_CDS: -6.49 Total: 25.77 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -0.49 Total: -99.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.54 -11.61 -45.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133234616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.149 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds