Wall clock time and date at job start Mon Mar 30 2020 04:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 C 1.38017 * 120.00039 * 239.99457 * 12 2 1 15 15 N 1.32947 * 119.99796 * 0.02562 * 14 12 2 16 16 C 1.32925 * 119.99704 * 180.02562 * 15 14 12 17 17 N 1.38009 * 119.99831 * 179.97438 * 16 15 14 18 18 N 1.32944 * 120.00255 * 359.97018 * 16 15 14 19 19 C 1.32925 * 119.99824 * 0.02562 * 18 16 15 20 20 N 1.38014 * 120.00018 * 179.97438 * 19 18 16 21 21 C 1.46498 * 120.00056 * 359.97438 * 20 19 18 22 22 C 1.46491 * 120.00028 * 180.02562 * 20 19 18 23 23 N 1.32920 * 119.99868 * 179.72364 * 14 12 2 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 29 29 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 30 30 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 31 31 H 0.97006 * 120.00358 * 0.02562 * 17 16 15 32 32 H 0.96998 * 119.99863 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47271 * 0.02562 * 21 20 19 34 34 H 1.08998 * 109.47033 * 120.00008 * 21 20 19 35 35 H 1.08999 * 109.47528 * 240.00741 * 21 20 19 36 36 H 1.09001 * 109.47665 * 89.99768 * 22 20 19 37 37 H 1.09003 * 109.47292 * 209.99369 * 22 20 19 38 38 H 1.09005 * 109.47440 * 329.99571 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.8119 -0.0199 2.1046 15 7 3.1327 1.2530 1.8944 16 6 3.8974 1.8988 2.7691 17 7 4.2309 3.2200 2.5507 18 7 4.3410 1.2720 3.8543 19 6 4.0201 -0.0008 4.0645 20 7 4.4810 -0.6517 5.1909 21 6 5.3242 0.0599 6.1546 22 6 4.1278 -2.0545 5.4222 23 7 3.2504 -0.6450 3.1926 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9026 -0.5282 -4.4376 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9846 31 1 3.9070 3.6776 1.7590 32 1 4.7886 3.6914 3.1891 33 1 5.4783 1.0844 5.8157 34 1 4.8345 0.0694 7.1283 35 1 6.2870 -0.4445 6.2370 36 1 4.8792 -2.6985 4.9652 37 1 4.0879 -2.2471 6.4943 38 1 3.1537 -2.2618 4.9792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133234616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:20 Heat of formation + Delta-G solvation = 91.615282 kcal Electronic energy + Delta-G solvation = -20790.847788 eV Core-core repulsion = 17704.587915 eV Total energy + Delta-G solvation = -3086.259873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.155 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.15692 -38.90449 -37.98065 -36.01381 -34.63796 -33.34226 -32.61020 -31.59203 -28.92444 -27.73401 -27.13074 -26.95033 -24.05456 -23.20325 -21.46740 -19.77800 -19.02030 -18.64901 -17.31680 -17.15621 -16.93260 -16.57942 -16.29692 -15.62745 -15.33556 -15.13985 -14.89037 -14.75678 -14.54500 -14.05524 -13.59592 -13.30263 -13.12484 -13.04980 -12.94410 -12.81262 -12.79284 -12.42683 -12.23404 -11.95432 -11.49938 -11.27844 -10.76203 -10.25581 -10.15403 -9.81174 -9.14604 -8.94820 -8.30673 -6.35845 0.64360 0.68181 1.32081 1.39869 1.50144 1.54244 2.08840 2.32277 2.41020 3.04722 3.27457 3.54818 3.73849 4.25543 4.43162 4.50741 4.53497 4.60388 4.63549 4.66789 4.73538 4.83910 4.86077 4.96661 5.01913 5.06230 5.16886 5.31187 5.55548 5.65036 5.66272 5.96888 6.09021 6.19265 6.35416 6.61934 6.64734 6.75642 6.98265 7.29215 7.91175 8.86001 Molecular weight = 266.16amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.005836 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.399352 B = 4796.343171 C = 5418.357138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.248 3.752 3 H 0.057 0.943 4 C -0.526 4.526 5 H 0.033 0.967 6 C 0.021 3.979 7 N -0.944 5.944 8 Si 0.947 3.053 9 H -0.258 1.258 10 H -0.249 1.249 11 H -0.296 1.296 12 N -0.556 5.556 13 C 0.117 3.883 14 C 0.636 3.364 15 N -0.702 5.702 16 C 0.634 3.366 17 N -0.792 5.792 18 N -0.689 5.689 19 C 0.627 3.373 20 N -0.586 5.586 21 C 0.097 3.903 22 C 0.104 3.896 23 N -0.687 5.687 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.268 0.732 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.421 0.579 32 H 0.425 0.575 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 4.160 19.355 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.145 3.855 3 H 0.074 0.926 4 C -0.565 4.565 5 H 0.051 0.949 6 C -0.177 4.177 7 N -0.584 5.584 8 Si 0.774 3.226 9 H -0.184 1.184 10 H -0.173 1.173 11 H -0.224 1.224 12 N -0.269 5.269 13 C -0.026 4.026 14 C 0.272 3.728 15 N -0.448 5.448 16 C 0.266 3.734 17 N -0.344 5.344 18 N -0.436 5.436 19 C 0.262 3.738 20 N -0.304 5.304 21 C -0.045 4.045 22 C -0.039 4.039 23 N -0.433 5.433 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.253 0.747 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.121 3.913 19.204 19.713 hybrid contribution -0.069 0.637 -0.976 1.168 sum 2.052 4.550 18.227 18.898 Atomic orbital electron populations 1.22347 0.96873 1.02042 0.99960 1.19087 0.91332 0.93998 0.81087 0.92558 1.21358 1.31641 1.12943 0.90516 0.94852 1.25694 0.97172 0.99847 0.94983 1.70031 1.47309 1.42382 0.98635 0.85884 0.79350 0.79909 0.77492 1.18355 1.17323 1.22413 1.46342 1.48489 1.11895 1.20202 1.21460 1.00142 0.79253 1.01731 1.18869 0.84550 0.84441 0.84987 1.68019 1.29510 1.10835 1.36404 1.19073 0.83268 0.87854 0.83254 1.41491 1.57072 1.06099 1.29723 1.67891 1.39178 1.10723 1.25801 1.19027 0.83969 0.84548 0.86261 1.46079 1.52672 1.12596 1.19090 1.21833 0.93594 0.98213 0.90840 1.21706 1.01201 0.78275 1.02676 1.67976 1.27092 1.39999 1.08212 0.91650 0.92695 0.93437 0.92320 0.94890 0.89724 0.90418 0.74696 0.74134 0.90126 0.90373 0.90967 0.93057 0.88099 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.45 8.65 71.98 0.62 -5.83 16 2 C 0.25 12.06 2.25 44.25 0.10 12.16 16 3 H 0.06 2.92 5.86 -2.39 -0.01 2.90 16 4 C -0.53 -30.21 8.95 25.60 0.23 -29.98 16 5 H 0.03 2.16 7.89 -2.91 -0.02 2.13 16 6 C 0.02 1.23 5.45 84.66 0.46 1.69 16 7 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 8 Si 0.95 44.27 24.37 68.60 1.67 45.94 16 9 H -0.26 -11.18 6.87 99.48 0.68 -10.50 16 10 H -0.25 -11.06 6.53 99.48 0.65 -10.41 16 11 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 12 N -0.56 -24.94 2.84 -715.43 -2.03 -26.97 16 13 C 0.12 4.48 9.70 127.77 1.24 5.71 16 14 C 0.64 28.10 8.19 261.29 2.14 30.24 16 15 N -0.70 -30.33 9.01 -200.70 -1.81 -32.14 16 16 C 0.63 22.90 8.76 261.29 2.29 25.19 16 17 N -0.79 -20.11 9.05 -59.51 -0.54 -20.65 16 18 N -0.69 -23.80 9.01 -200.70 -1.81 -25.61 16 19 C 0.63 22.07 8.19 261.28 2.14 24.21 16 20 N -0.59 -15.26 3.36 -760.64 -2.56 -17.82 16 21 C 0.10 1.76 10.71 127.77 1.37 3.13 16 22 C 0.10 2.12 10.50 127.77 1.34 3.46 16 23 N -0.69 -27.18 7.99 -200.69 -1.60 -28.78 16 24 H 0.06 2.58 6.66 -2.39 -0.02 2.57 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 27 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.08 2.86 7.36 -2.39 -0.02 2.84 16 30 H 0.08 2.78 6.43 -2.39 -0.02 2.76 16 31 H 0.42 9.78 8.95 -92.70 -0.83 8.95 16 32 H 0.43 7.98 8.95 -92.71 -0.83 7.15 16 33 H 0.08 1.70 6.80 -2.39 -0.02 1.68 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.06 1.58 7.36 -2.38 -0.02 1.56 16 Total: -1.00 -74.30 308.07 2.92 -71.39 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.63 Total: 22.98 kcal Atomic # 6 Polarization: 58.05 SS G_CDS: 11.93 Total: 69.98 kcal Atomic # 7 Polarization: -200.25 SS G_CDS: -10.05 Total: -210.30 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.67 Total: 45.94 kcal Total: -74.30 2.92 -71.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133234616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.003 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds