Wall clock time and date at job start Mon Mar 30 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47216 * 2 1 4 4 C 1.46896 * 110.99926 * 68.52089 * 3 2 1 5 5 C 1.50702 * 109.47038 * 66.04420 * 4 3 2 6 6 H 1.07997 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47474 * 60.00171 * 9 7 5 11 11 H 1.48504 * 109.47396 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47027 * 299.99912 * 9 7 5 13 13 C 1.38928 * 111.00133 * 304.56911 * 3 2 1 14 14 N 1.33130 * 120.50559 * 107.29268 * 13 3 2 15 15 C 1.31738 * 120.91354 * 180.02562 * 14 13 3 16 16 N 1.31773 * 121.99299 * 359.97438 * 15 14 13 17 17 C 1.33107 * 120.91209 * 0.02562 * 16 15 14 18 18 N 1.38919 * 120.50848 * 180.02562 * 17 16 15 19 19 C 1.46500 * 119.99691 * 359.97438 * 18 17 16 20 20 C 1.39440 * 120.50107 * 287.57282 * 13 3 2 21 21 O 1.36146 * 120.90370 * 0.02562 * 20 13 3 22 22 C 1.42897 * 116.99681 * 270.24880 * 21 20 13 23 23 H 1.08997 * 109.46859 * 304.47207 * 1 2 3 24 24 H 1.08993 * 109.47230 * 64.47364 * 1 2 3 25 25 H 1.08999 * 109.46908 * 184.47724 * 1 2 3 26 26 H 1.09003 * 109.47173 * 240.00236 * 2 1 3 27 27 H 1.08997 * 109.47476 * 120.00131 * 2 1 3 28 28 H 1.08999 * 109.47519 * 186.04948 * 4 3 2 29 29 H 1.09002 * 109.47424 * 306.04694 * 4 3 2 30 30 H 0.97006 * 120.00265 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.00935 * 180.02562 * 15 14 13 32 32 H 0.96996 * 120.00026 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.46450 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.47358 * 299.99974 * 19 18 17 35 35 H 1.08995 * 109.46920 * 60.00698 * 19 18 17 36 36 H 1.09002 * 109.46951 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.47491 * 299.99477 * 22 21 20 38 38 H 1.08998 * 109.47267 * 59.99945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7217 2.0487 1.2762 5 6 2.5081 1.3903 2.3804 6 1 3.1639 0.5620 2.1564 7 6 2.3911 1.8461 3.6763 8 7 1.5928 2.8551 3.9490 9 14 3.3663 1.0305 5.0449 10 1 4.8181 1.1448 4.7543 11 1 3.0651 1.7014 6.3351 12 1 2.9907 -0.4034 5.1337 13 6 1.4918 2.0997 -1.0680 14 7 0.5563 3.0250 -0.8655 15 6 0.0499 3.7071 -1.8723 16 7 0.4400 3.5101 -3.1155 17 6 1.3709 2.6037 -3.4046 18 7 1.7762 2.4032 -4.7181 19 6 1.1778 3.1921 -5.7978 20 6 1.9297 1.8548 -2.3690 21 8 2.8801 0.9132 -2.6212 22 6 4.2425 1.3435 -2.5957 23 1 -0.3633 0.5817 0.8472 24 1 -0.3633 0.4428 -0.9273 25 1 -0.3633 -1.0245 0.0802 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9975 3.1012 1.2114 29 1 0.6560 1.9648 1.4893 30 1 1.5102 3.1756 4.8608 31 1 -0.7073 4.4509 -1.6729 32 1 2.4554 1.7410 -4.9203 33 1 1.6177 2.8967 -6.7503 34 1 0.1026 3.0153 -5.8241 35 1 1.3678 4.2510 -5.6223 36 1 4.8949 0.4975 -2.8119 37 1 4.3926 2.1195 -3.3464 38 1 4.4793 1.7418 -1.6091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134857598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:57 Heat of formation + Delta-G solvation = 31.924116 kcal Electronic energy + Delta-G solvation = -21081.596375 eV Core-core repulsion = 17960.455348 eV Total energy + Delta-G solvation = -3121.141027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85831 -37.64957 -37.54884 -35.52562 -32.66622 -31.77732 -30.26739 -29.33916 -27.10576 -26.79143 -25.56776 -23.71555 -22.65951 -22.44838 -20.10208 -18.01616 -17.35994 -17.15432 -16.14942 -15.76860 -15.41149 -14.79777 -14.52325 -14.38059 -14.24103 -13.94012 -13.63117 -13.16413 -13.08436 -12.43045 -12.25264 -11.97128 -11.84769 -11.37572 -11.14786 -10.89561 -10.79691 -10.60238 -10.54701 -10.29980 -10.11694 -10.02494 -9.49260 -9.16727 -8.47030 -8.42552 -7.93475 -7.40172 -6.01049 -4.04000 1.34941 1.77359 3.18173 3.33473 3.37928 3.40159 3.86973 4.21523 4.41488 4.54870 4.66919 5.04435 5.14911 5.33808 5.40021 5.49086 5.50063 5.65288 5.72586 5.75284 5.80817 5.88109 5.97720 6.06048 6.30330 6.45494 6.63148 6.83407 6.90195 7.06324 7.24269 7.48530 7.68674 7.74541 7.86096 8.00511 8.13034 8.49612 8.73909 9.02990 9.59045 11.09118 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.005539 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.800310 B = 5053.496093 C = 5381.440132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 N -0.473 5.473 4 C 0.200 3.800 5 C -0.518 4.518 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.387 3.613 14 N -0.566 5.566 15 C 0.344 3.656 16 N -0.592 5.592 17 C 0.426 3.574 18 N -0.720 5.720 19 C 0.104 3.896 20 C -0.093 4.093 21 O -0.312 6.312 22 C 0.031 3.969 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.020 0.980 30 H 0.262 0.738 31 H 0.192 0.808 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.032 0.968 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -1.858 -16.421 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.054 4.054 3 N -0.190 5.190 4 C 0.076 3.924 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.150 3.850 14 N -0.291 5.291 15 C 0.053 3.947 16 N -0.321 5.321 17 C 0.183 3.817 18 N -0.355 5.355 19 C -0.040 4.040 20 C -0.149 4.149 21 O -0.226 6.226 22 C -0.064 4.064 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.208 0.792 32 H 0.247 0.753 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.018 -1.260 -16.245 16.294 hybrid contribution 0.784 -0.750 0.711 1.297 sum 0.765 -2.009 -15.534 15.682 Atomic orbital electron populations 1.22372 0.97934 1.01571 1.01930 1.22066 0.92799 0.87314 1.03197 1.59566 1.51827 1.03135 1.04479 1.19768 0.96695 0.94405 0.81504 1.21118 1.25945 1.17080 0.91574 0.91990 1.24939 0.95534 0.95110 0.98621 1.69974 1.37329 1.25557 1.20101 0.86581 0.80440 0.79464 0.81026 1.20251 1.21326 1.20227 1.20694 0.85226 0.88893 0.90206 1.68732 1.12108 1.11908 1.36319 1.24463 0.94502 0.93678 0.82021 1.67933 1.17642 1.22122 1.24355 1.18800 0.89368 0.87912 0.85625 1.44161 1.45038 1.43641 1.02626 1.21423 0.98605 0.95831 0.88173 1.19089 1.01599 1.02557 0.91656 1.86105 1.13743 1.32295 1.90409 1.22986 0.82053 1.00155 1.01244 0.90999 0.94208 0.92695 0.91183 0.88629 0.94706 0.96203 0.92823 0.79156 0.75267 0.91410 0.92563 0.92616 0.89385 0.94958 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 9.35 37.16 0.35 -3.03 16 2 C 0.07 1.43 5.74 -3.82 -0.02 1.41 16 3 N -0.47 -10.57 4.54 -174.28 -0.79 -11.36 16 4 C 0.20 5.28 3.79 -4.98 -0.02 5.26 16 5 C -0.52 -14.40 8.39 -34.44 -0.29 -14.69 16 6 H 0.06 1.68 7.16 -52.49 -0.38 1.30 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.39 8.01 4.48 -154.35 -0.69 7.32 16 14 N -0.57 -11.69 9.05 -13.74 -0.12 -11.81 16 15 C 0.34 5.91 12.28 -92.22 -1.13 4.78 16 16 N -0.59 -9.81 9.70 -13.74 -0.13 -9.94 16 17 C 0.43 6.92 7.52 -154.36 -1.16 5.76 16 18 N -0.72 -8.92 5.86 -66.96 -0.39 -9.31 16 19 C 0.10 1.00 10.77 59.85 0.64 1.65 16 20 C -0.09 -1.67 5.63 -38.67 -0.22 -1.89 16 21 O -0.31 -5.10 8.51 -20.20 -0.17 -5.27 16 22 C 0.03 0.42 11.13 101.05 1.13 1.55 16 23 H 0.07 1.53 6.35 -51.93 -0.33 1.20 16 24 H 0.04 0.75 7.28 -51.93 -0.38 0.37 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.29 7.08 -51.93 -0.37 0.92 16 27 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 28 H 0.03 1.02 7.89 -51.93 -0.41 0.61 16 29 H 0.02 0.57 6.18 -51.93 -0.32 0.25 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.19 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.41 4.44 8.26 -40.82 -0.34 4.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -31.76 316.58 -8.02 -39.78 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.38 Total: 2.72 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.51 Total: 9.71 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.71 Total: -68.14 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.17 Total: -5.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.76 -8.02 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134857598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.708 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds