Wall clock time and date at job start Mon Mar 30 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47216 * 2 1 4 4 C 1.46896 * 110.99926 * 68.52089 * 3 2 1 5 5 C 1.50702 * 109.47038 * 66.04420 * 4 3 2 6 6 H 1.07997 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47474 * 60.00171 * 9 7 5 11 11 H 1.48504 * 109.47396 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47027 * 299.99912 * 9 7 5 13 13 C 1.38928 * 111.00133 * 304.56911 * 3 2 1 14 14 N 1.33130 * 120.50559 * 107.29268 * 13 3 2 15 15 C 1.31738 * 120.91354 * 180.02562 * 14 13 3 16 16 N 1.31773 * 121.99299 * 359.97438 * 15 14 13 17 17 C 1.33107 * 120.91209 * 0.02562 * 16 15 14 18 18 N 1.38919 * 120.50848 * 180.02562 * 17 16 15 19 19 C 1.46500 * 119.99691 * 359.97438 * 18 17 16 20 20 C 1.39440 * 120.50107 * 287.57282 * 13 3 2 21 21 O 1.36146 * 120.90370 * 0.02562 * 20 13 3 22 22 C 1.42897 * 116.99681 * 270.24880 * 21 20 13 23 23 H 1.08997 * 109.46859 * 304.47207 * 1 2 3 24 24 H 1.08993 * 109.47230 * 64.47364 * 1 2 3 25 25 H 1.08999 * 109.46908 * 184.47724 * 1 2 3 26 26 H 1.09003 * 109.47173 * 240.00236 * 2 1 3 27 27 H 1.08997 * 109.47476 * 120.00131 * 2 1 3 28 28 H 1.08999 * 109.47519 * 186.04948 * 4 3 2 29 29 H 1.09002 * 109.47424 * 306.04694 * 4 3 2 30 30 H 0.97006 * 120.00265 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.00935 * 180.02562 * 15 14 13 32 32 H 0.96996 * 120.00026 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.46450 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.47358 * 299.99974 * 19 18 17 35 35 H 1.08995 * 109.46920 * 60.00698 * 19 18 17 36 36 H 1.09002 * 109.46951 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.47491 * 299.99477 * 22 21 20 38 38 H 1.08998 * 109.47267 * 59.99945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7217 2.0487 1.2762 5 6 2.5081 1.3903 2.3804 6 1 3.1639 0.5620 2.1564 7 6 2.3911 1.8461 3.6763 8 7 1.5928 2.8551 3.9490 9 14 3.3663 1.0305 5.0449 10 1 4.8181 1.1448 4.7543 11 1 3.0651 1.7014 6.3351 12 1 2.9907 -0.4034 5.1337 13 6 1.4918 2.0997 -1.0680 14 7 0.5563 3.0250 -0.8655 15 6 0.0499 3.7071 -1.8723 16 7 0.4400 3.5101 -3.1155 17 6 1.3709 2.6037 -3.4046 18 7 1.7762 2.4032 -4.7181 19 6 1.1778 3.1921 -5.7978 20 6 1.9297 1.8548 -2.3690 21 8 2.8801 0.9132 -2.6212 22 6 4.2425 1.3435 -2.5957 23 1 -0.3633 0.5817 0.8472 24 1 -0.3633 0.4428 -0.9273 25 1 -0.3633 -1.0245 0.0802 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9975 3.1012 1.2114 29 1 0.6560 1.9648 1.4893 30 1 1.5102 3.1756 4.8608 31 1 -0.7073 4.4509 -1.6729 32 1 2.4554 1.7410 -4.9203 33 1 1.6177 2.8967 -6.7503 34 1 0.1026 3.0153 -5.8241 35 1 1.3678 4.2510 -5.6223 36 1 4.8949 0.4975 -2.8119 37 1 4.3926 2.1195 -3.3464 38 1 4.4793 1.7418 -1.6091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134857598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:57 Heat of formation + Delta-G solvation = 10.107925 kcal Electronic energy + Delta-G solvation = -21082.542396 eV Core-core repulsion = 17960.455348 eV Total energy + Delta-G solvation = -3122.087049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.25249 -39.10518 -38.93626 -36.75290 -34.76398 -33.17181 -31.59350 -31.06608 -28.84865 -27.91136 -26.86265 -25.35112 -24.15845 -24.02577 -21.66653 -19.37476 -18.76676 -18.45765 -18.16110 -17.20195 -16.94281 -16.50305 -15.99170 -15.62948 -15.45707 -15.35308 -14.89594 -14.77279 -14.33743 -14.15724 -13.77932 -13.21950 -13.10528 -12.94332 -12.88455 -12.70033 -12.55721 -12.13219 -12.06332 -11.86374 -11.79580 -11.54662 -11.27483 -10.85078 -10.55966 -9.87156 -9.35542 -8.88140 -8.17366 -6.29047 -0.03257 0.38598 1.42696 1.46097 1.53810 2.07579 2.41047 2.57434 2.80168 3.11422 3.15623 3.38685 3.65814 4.04454 4.21152 4.26848 4.30309 4.48419 4.49333 4.53676 4.62163 4.72197 4.80616 4.84234 4.91830 4.98748 5.12874 5.15684 5.28628 5.44837 5.64573 5.74485 5.91304 6.01611 6.08379 6.39900 6.64601 6.69839 6.86264 7.36037 7.41472 8.93521 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.005539 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.800310 B = 5053.496093 C = 5381.440132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 N -0.479 5.479 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.066 0.934 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.359 3.641 14 N -0.606 5.606 15 C 0.342 3.658 16 N -0.587 5.587 17 C 0.425 3.575 18 N -0.704 5.704 19 C 0.101 3.899 20 C -0.092 4.092 21 O -0.315 6.315 22 C 0.031 3.969 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.084 0.916 28 H -0.007 1.007 29 H -0.009 1.009 30 H 0.264 0.736 31 H 0.220 0.780 32 H 0.421 0.579 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.120 0.880 37 H 0.050 0.950 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -3.014 -18.347 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.052 4.052 3 N -0.197 5.197 4 C 0.103 3.897 5 C -0.570 4.570 6 H 0.085 0.915 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.123 3.877 14 N -0.332 5.332 15 C 0.052 3.948 16 N -0.315 5.315 17 C 0.180 3.820 18 N -0.338 5.338 19 C -0.043 4.043 20 C -0.148 4.148 21 O -0.229 6.229 22 C -0.064 4.064 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.073 0.927 31 H 0.237 0.763 32 H 0.259 0.741 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.929 -2.432 -18.242 18.427 hybrid contribution 0.480 -0.350 1.103 1.253 sum 1.409 -2.782 -17.139 17.420 Atomic orbital electron populations 1.22209 0.97283 1.02656 1.00216 1.22109 0.93339 0.86350 1.03443 1.59537 1.53030 1.03928 1.03183 1.19169 0.94530 0.92357 0.83652 1.21440 1.26023 1.17211 0.92358 0.91540 1.25887 0.96459 0.95566 1.01329 1.70126 1.38941 1.27129 1.20745 0.85433 0.78934 0.78805 0.77410 1.19409 1.20996 1.18878 1.20782 0.86513 0.89652 0.90744 1.68662 1.13446 1.12910 1.38135 1.25011 0.94504 0.93569 0.81712 1.68047 1.17625 1.22148 1.23730 1.18968 0.88843 0.87262 0.86921 1.44337 1.44454 1.43415 1.01575 1.21650 0.98637 0.95320 0.88673 1.19022 1.02050 1.02816 0.90958 1.86075 1.14523 1.32172 1.90153 1.23133 0.80986 1.02094 1.00171 0.94273 0.94500 0.89761 0.89192 0.89786 0.98906 0.99119 0.92724 0.76345 0.74123 0.87521 0.92910 0.92983 0.86192 0.93145 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.31 9.35 71.98 0.67 -5.64 16 2 C 0.07 2.92 5.74 86.30 0.50 3.42 16 3 N -0.48 -22.14 4.54 -705.30 -3.20 -25.34 16 4 C 0.23 12.71 3.79 85.56 0.32 13.03 16 5 C -0.53 -30.43 8.39 25.60 0.21 -30.22 16 6 H 0.07 3.66 7.16 -2.91 -0.02 3.64 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 9 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.36 15.21 4.48 132.94 0.60 15.80 16 14 N -0.61 -25.93 9.05 -197.38 -1.79 -27.72 16 15 C 0.34 11.79 12.28 180.91 2.22 14.01 16 16 N -0.59 -18.78 9.70 -197.37 -1.91 -20.69 16 17 C 0.43 13.15 7.52 132.96 1.00 14.15 16 18 N -0.70 -15.36 5.86 -365.76 -2.14 -17.50 16 19 C 0.10 1.59 10.77 127.77 1.38 2.97 16 20 C -0.09 -3.25 5.63 22.86 0.13 -3.12 16 21 O -0.32 -9.81 8.51 -95.21 -0.81 -10.62 16 22 C 0.03 0.79 11.13 113.37 1.26 2.05 16 23 H 0.04 1.74 6.35 -2.39 -0.02 1.72 16 24 H 0.04 1.40 7.28 -2.39 -0.02 1.38 16 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.09 3.23 7.08 -2.39 -0.02 3.21 16 27 H 0.08 3.53 6.67 -2.39 -0.02 3.51 16 28 H -0.01 -0.46 7.89 -2.39 -0.02 -0.48 16 29 H -0.01 -0.55 6.18 -2.39 -0.01 -0.56 16 30 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.22 5.88 8.06 -2.91 -0.02 5.85 16 32 H 0.42 7.62 8.26 -92.71 -0.77 6.85 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.40 316.58 1.51 -69.89 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.30 Total: 15.05 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 8.75 Total: 27.29 kcal Atomic # 7 Polarization: -139.22 SS G_CDS: -8.76 Total: -147.99 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.81 Total: -10.62 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.40 1.51 -69.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134857598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.000 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds