Wall clock time and date at job start Mon Mar 30 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46992 * 110.99349 * 2 1 4 4 C 1.53056 * 109.33916 * 176.82325 * 3 2 1 5 5 N 1.46956 * 109.38342 * 58.38486 * 4 3 2 6 6 C 1.46897 * 111.00174 * 176.80239 * 5 4 3 7 7 C 1.46954 * 110.88102 * 300.67443 * 5 4 3 8 8 H 1.09002 * 109.48670 * 299.34750 * 7 5 4 9 9 C 1.50696 * 109.49050 * 179.31090 * 7 5 4 10 10 N 1.29954 * 126.28520 * 314.68001 * 9 7 5 11 11 O 1.21303 * 110.25185 * 179.84291 * 10 9 7 12 12 C 1.33644 * 109.80890 * 0.42773 * 11 10 9 13 13 C 1.50706 * 126.54941 * 179.71195 * 12 11 10 14 14 C 1.50699 * 109.47007 * 270.02769 * 13 12 11 15 15 H 1.07992 * 120.00031 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99533 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00378 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99841 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47274 * 90.00159 * 18 16 14 20 20 H 1.48499 * 109.47344 * 210.00065 * 18 16 14 21 21 H 1.48503 * 109.47313 * 329.99932 * 18 16 14 22 22 N 1.31125 * 106.89912 * 359.73787 * 12 11 10 23 23 C 1.46956 * 110.99900 * 236.18453 * 2 1 3 24 24 H 1.08997 * 109.47674 * 183.81834 * 1 2 3 25 25 H 1.09009 * 109.47152 * 303.81154 * 1 2 3 26 26 H 1.08995 * 109.47182 * 63.81197 * 1 2 3 27 27 H 1.08999 * 109.52745 * 56.85194 * 3 2 1 28 28 H 1.09001 * 109.48186 * 296.76638 * 3 2 1 29 29 H 1.09002 * 109.48813 * 298.40763 * 4 3 2 30 30 H 1.09002 * 109.48870 * 178.36652 * 4 3 2 31 31 H 1.09003 * 109.46973 * 56.04348 * 6 5 4 32 32 H 1.08998 * 109.47128 * 176.04789 * 6 5 4 33 33 H 1.09003 * 109.46875 * 296.04647 * 6 5 4 34 34 H 1.08993 * 109.46809 * 30.03212 * 13 12 11 35 35 H 1.09000 * 109.46946 * 150.02761 * 13 12 11 36 36 H 0.97001 * 120.00897 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.48806 * 63.22254 * 23 2 1 38 38 H 1.09003 * 109.48750 * 303.16180 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3723 0.0000 4 6 3.5235 1.3290 0.0800 5 7 4.0501 0.5654 -1.0598 6 6 5.5191 0.5653 -1.0599 7 6 3.5234 -0.8065 -1.0595 8 1 3.8253 -1.3117 -0.1421 9 6 4.0689 -1.5548 -2.2484 10 7 4.1399 -1.1134 -3.4686 11 8 4.6312 -1.9545 -4.1915 12 6 4.9208 -3.0489 -3.4812 13 6 5.5364 -4.3212 -4.0041 14 6 4.4456 -5.2620 -4.4470 15 1 3.4103 -4.9681 -4.3584 16 6 4.7696 -6.4982 -4.9644 17 7 6.0305 -6.8566 -5.0710 18 14 3.4176 -7.6646 -5.5128 19 1 3.1061 -7.4231 -6.9446 20 1 3.8716 -9.0673 -5.3349 21 1 2.2003 -7.4309 -4.6951 22 7 4.5665 -2.8043 -2.2427 23 6 1.9956 -0.7635 -1.1399 24 1 -0.3634 -1.0253 0.0684 25 1 -0.3634 0.5719 0.8539 26 1 -0.3633 0.4535 -0.9221 27 1 1.6017 1.9137 0.8601 28 1 1.6938 1.8775 -0.9175 29 1 3.8254 0.8480 1.0105 30 1 3.9182 2.3446 0.0510 31 1 5.8824 0.1765 -0.1086 32 1 5.8824 -0.0641 -1.8722 33 1 5.8824 1.5836 -1.1988 34 1 6.1834 -4.0907 -4.8504 35 1 6.1237 -4.7915 -3.2154 36 1 6.2585 -7.7265 -5.4346 37 1 1.6938 -0.2826 -2.0703 38 1 1.6012 -1.7793 -1.1105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300092625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:11 Heat of formation + Delta-G solvation = 81.225731 kcal Electronic energy + Delta-G solvation = -20499.966514 eV Core-core repulsion = 17380.963365 eV Total energy + Delta-G solvation = -3119.003149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.78001 -39.55321 -35.88585 -34.95347 -33.81001 -32.20650 -30.65960 -29.39149 -28.37413 -25.56613 -24.72617 -24.04106 -23.26553 -22.34714 -20.91342 -19.40572 -17.49862 -16.87711 -16.31253 -16.09114 -15.47746 -15.20253 -14.91839 -14.81310 -14.61772 -14.14902 -13.36738 -12.99681 -12.66341 -12.58763 -12.47241 -12.24477 -12.02927 -11.72394 -11.55534 -11.33038 -11.31715 -11.08496 -11.01145 -10.78599 -10.64091 -10.31066 -10.09060 -9.83592 -8.91908 -8.62444 -8.61680 -8.43029 -6.25260 -4.30893 1.96681 2.90139 3.24089 3.30457 3.35077 3.54633 3.74660 3.83303 4.25518 4.33129 4.71743 4.77434 4.90786 4.96814 5.10311 5.13884 5.22095 5.32122 5.35028 5.39158 5.46892 5.56518 5.64011 5.69144 5.76754 5.85275 5.90751 6.03475 6.55154 6.63503 6.72764 6.75406 6.92177 6.95145 7.12046 7.19692 7.68204 7.91837 8.69342 8.97761 9.34024 10.85181 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.027549 B = 0.004569 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.121812 B = 6127.213294 C = 6849.077819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.054 3.946 4 C 0.059 3.941 5 N -0.534 5.534 6 C 0.028 3.972 7 C 0.188 3.812 8 H 0.078 0.922 9 C 0.158 3.842 10 N -0.383 5.383 11 O 0.061 5.939 12 C 0.236 3.764 13 C 0.101 3.899 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.272 1.272 22 N -0.505 5.505 23 C 0.068 3.932 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.268 0.732 37 H 0.049 0.951 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 14.344 9.429 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.074 4.074 4 C -0.069 4.069 5 N -0.260 5.260 6 C -0.120 4.120 7 C 0.078 3.922 8 H 0.096 0.904 9 C -0.116 4.116 10 N -0.094 5.094 11 O 0.005 5.995 12 C 0.018 3.982 13 C 0.062 3.938 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.197 1.197 22 N -0.239 5.239 23 C -0.062 4.062 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.882 14.899 9.575 18.662 hybrid contribution -0.574 -0.839 -0.441 1.108 sum -6.456 14.061 9.134 17.967 Atomic orbital electron populations 1.22342 0.86677 1.02592 1.00556 1.62125 1.08219 1.13762 1.42774 1.22225 0.94499 0.89477 1.01238 1.22177 0.94451 0.98544 0.91728 1.62045 1.08469 1.12498 1.42977 1.22338 0.86537 1.02393 1.00726 1.19588 0.93729 0.87153 0.91744 0.90445 1.25201 1.01783 0.90711 0.93877 1.74582 1.17081 1.13946 1.03785 1.85302 1.56868 1.20348 1.36982 1.30141 0.91800 0.91741 0.84540 1.18202 0.96311 0.81174 0.98072 1.20788 0.92249 0.99938 1.43243 0.92072 1.24917 0.95984 0.97714 0.95046 1.69918 1.16501 1.21673 1.44462 0.86359 0.81555 0.79695 0.79121 1.20269 1.20853 1.19679 1.71945 1.19106 1.12598 1.20267 1.22126 0.92470 0.99271 0.92289 0.91065 0.91192 0.95425 0.90004 0.93715 0.93625 0.89764 0.95195 0.91587 0.91008 0.92397 0.91379 0.92261 0.93232 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 60.07 0.58 0.83 16 2 N -0.54 -6.58 4.97 -242.72 -1.21 -7.79 16 3 C 0.05 0.56 5.63 -3.74 -0.02 0.54 16 4 C 0.06 0.65 5.62 -3.76 -0.02 0.62 16 5 N -0.53 -7.57 4.77 -236.13 -1.13 -8.70 16 6 C 0.03 0.38 9.43 60.06 0.57 0.95 16 7 C 0.19 3.02 2.50 -68.82 -0.17 2.85 16 8 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 9 C 0.16 3.10 5.34 -156.37 -0.83 2.27 16 10 N -0.38 -7.91 11.96 30.90 0.37 -7.54 16 11 O 0.06 1.34 11.31 18.10 0.20 1.54 16 12 C 0.24 5.34 7.70 -13.06 -0.10 5.24 16 13 C 0.10 2.47 5.60 -29.03 -0.16 2.31 16 14 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 18 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 N -0.50 -11.12 11.55 -9.86 -0.11 -11.23 16 23 C 0.07 0.99 4.89 -3.77 -0.02 0.97 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.55 8.13 -51.92 -0.42 0.13 16 26 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 1.06 6.58 -51.93 -0.34 0.72 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -28.70 316.15 -7.79 -36.49 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.80 Total: -3.30 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.60 Total: 3.93 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.34 Total: -59.13 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.70 -7.79 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300092625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.719 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds