Wall clock time and date at job start Mon Mar 30 2020 04:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 6 6 N 1.46500 * 109.47473 * 59.99627 * 5 2 1 7 7 C 1.35310 * 125.87051 * 124.71354 * 6 5 2 8 8 C 1.35347 * 106.17800 * 179.91081 * 7 6 5 9 9 C 1.50706 * 126.75152 * 180.12730 * 8 7 6 10 10 N 1.46500 * 109.47204 * 95.24481 * 9 8 7 11 11 C 1.34776 * 120.00368 * 179.97438 * 10 9 8 12 12 O 1.21693 * 119.99311 * 359.97438 * 11 10 9 13 13 C 1.46372 * 120.00161 * 179.97438 * 11 10 9 14 14 H 1.08000 * 120.00359 * 359.97438 * 13 11 10 15 15 C 1.40046 * 119.99788 * 180.02562 * 13 11 10 16 16 N 1.30672 * 120.00166 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00109 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46880 * 89.99825 * 17 15 13 19 19 H 1.48492 * 109.47329 * 209.99643 * 17 15 13 20 20 H 1.48499 * 109.46722 * 330.00138 * 17 15 13 21 21 N 1.33771 * 106.49748 * 0.34841 * 8 7 6 22 22 N 1.28637 * 108.88309 * 359.77765 * 21 8 7 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 30 30 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 32 32 H 1.09002 * 109.47153 * 179.97438 * 5 2 1 33 33 H 1.09001 * 109.47289 * 299.99953 * 5 2 1 34 34 H 1.08000 * 126.91312 * 0.02562 * 7 6 5 35 35 H 1.09004 * 109.46811 * 215.23885 * 9 8 7 36 36 H 1.08997 * 109.47313 * 335.24152 * 9 8 7 37 37 H 0.97008 * 119.99655 * 359.97438 * 10 9 8 38 38 H 0.96995 * 120.00021 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0401 -0.7211 -1.2493 6 7 1.5517 -0.0305 -2.4454 7 6 2.3177 0.4474 -3.4533 8 6 1.4642 1.0030 -4.3448 9 6 1.8280 1.6710 -5.6458 10 7 1.7166 0.7030 -6.7397 11 6 1.9951 1.0793 -8.0036 12 8 2.3386 2.2233 -8.2360 13 6 1.8844 0.1119 -9.0964 14 1 1.5799 -0.9036 -8.8901 15 6 2.1743 0.5028 -10.4096 16 7 2.5431 1.7313 -10.6593 17 14 2.0337 -0.7319 -11.8044 18 1 0.6575 -0.6951 -12.3611 19 1 3.0083 -0.3875 -12.8705 20 1 2.3234 -2.0945 -11.2901 21 7 0.2346 0.8468 -3.8416 22 7 0.3206 0.2309 -2.7156 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 -1.7490 1.2492 30 1 3.1301 -0.7209 1.2493 31 1 1.6767 -0.2075 2.1392 32 1 3.1301 -0.7207 -1.2495 33 1 1.6767 -1.7488 -1.2494 34 1 3.3935 0.3943 -3.5317 35 1 1.1499 2.5048 -5.8280 36 1 2.8518 2.0407 -5.5905 37 1 1.4424 -0.2089 -6.5544 38 1 2.7436 2.0021 -11.5689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594649772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:02 Heat of formation + Delta-G solvation = 50.259834 kcal Electronic energy + Delta-G solvation = -19828.692340 eV Core-core repulsion = 16708.346409 eV Total energy + Delta-G solvation = -3120.345931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.20433 -38.17171 -37.18096 -34.06098 -33.08251 -32.29180 -30.70728 -27.78113 -27.64599 -27.51631 -26.80767 -24.95511 -22.02248 -21.28340 -19.67352 -19.32342 -17.48878 -16.97199 -16.51305 -15.31174 -15.06543 -14.90607 -14.62255 -14.34880 -13.96800 -13.84784 -13.37738 -13.17924 -12.86621 -12.59138 -12.34355 -12.12586 -11.96349 -11.64396 -11.47967 -11.34564 -11.16897 -11.12441 -10.94397 -10.73988 -10.53077 -10.41178 -10.19559 -9.90353 -9.11047 -8.81039 -7.56418 -7.46040 -6.14329 -4.59312 1.68368 2.33607 2.68004 3.17840 3.24399 3.27824 4.01879 4.15795 4.20459 4.42974 4.54276 4.63336 4.77632 4.86732 5.00066 5.03252 5.18429 5.21070 5.30898 5.35059 5.40837 5.53712 5.61535 5.65345 5.69631 5.79628 5.87951 5.91557 6.10178 6.26258 6.48849 6.56495 6.72435 7.47962 7.96860 8.12047 8.37714 8.67839 9.06894 9.57573 10.64157 10.82592 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.046750 B = 0.003342 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.787264 B = 8377.368926 C = 8561.996858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.139 4.139 5 C 0.124 3.876 6 N -0.291 5.291 7 C -0.041 4.041 8 C -0.018 4.018 9 C 0.217 3.783 10 N -0.761 5.761 11 C 0.557 3.443 12 O -0.581 6.581 13 C -0.544 4.544 14 H 0.067 0.933 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 N -0.259 5.259 22 N -0.087 5.087 23 H 0.090 0.910 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.189 0.811 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.381 0.619 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 -6.352 22.368 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.081 4.081 3 C -0.202 4.202 4 C -0.197 4.197 5 C 0.002 3.998 6 N -0.084 5.084 7 C -0.192 4.192 8 C -0.156 4.156 9 C 0.090 3.910 10 N -0.417 5.417 11 C 0.361 3.639 12 O -0.464 6.464 13 C -0.581 4.581 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 N -0.126 5.126 22 N -0.066 5.066 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.206 0.794 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.212 0.788 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.446 -5.477 22.546 23.206 hybrid contribution 1.031 -1.106 -0.737 1.682 sum 1.477 -6.583 21.809 22.828 Atomic orbital electron populations 1.22199 0.92743 1.02704 1.03826 1.20853 0.97809 0.96089 0.93345 1.21893 1.00849 0.94868 1.02574 1.21820 1.01081 1.00396 0.96374 1.22259 1.00317 0.96371 0.80830 1.47270 1.05787 1.38599 1.16775 1.23442 1.00120 1.04793 0.90828 1.22324 0.89225 1.04370 0.99686 1.19042 1.00357 0.91739 0.79873 1.46153 1.76497 1.12426 1.06666 1.18210 0.76970 0.88497 0.80247 1.90602 1.51904 1.21025 1.82827 1.20865 1.49106 0.97157 0.90935 0.91473 1.25701 0.92788 0.95236 0.99476 1.70021 1.32460 1.16735 1.20503 0.86373 0.78529 0.81262 0.80574 1.19735 1.20492 1.18972 1.75139 1.22108 1.13287 1.02039 1.78137 1.00342 1.16306 1.11784 0.89158 0.92571 0.92743 0.91928 0.92424 0.92544 0.92096 0.92267 0.91661 0.87796 0.88415 0.79395 0.91504 0.91585 0.78792 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.04 37.16 0.30 -1.10 16 2 C -0.08 -0.58 0.84 -154.51 -0.13 -0.71 16 3 C -0.14 -1.16 8.32 37.16 0.31 -0.85 16 4 C -0.14 -0.70 8.47 37.16 0.31 -0.38 16 5 C 0.12 0.94 5.44 -4.04 -0.02 0.92 16 6 N -0.29 -3.47 2.67 -61.26 -0.16 -3.64 16 7 C -0.04 -0.53 11.50 -17.05 -0.20 -0.73 16 8 C -0.02 -0.30 6.62 -82.78 -0.55 -0.85 16 9 C 0.22 4.35 6.23 -5.19 -0.03 4.32 16 10 N -0.76 -17.73 5.54 -62.90 -0.35 -18.08 16 11 C 0.56 16.14 7.75 -12.99 -0.10 16.04 16 12 O -0.58 -18.99 15.02 5.20 0.08 -18.92 16 13 C -0.54 -15.65 9.54 -35.63 -0.34 -15.99 16 14 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 15 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 16 N -0.77 -23.30 11.83 55.55 0.66 -22.64 16 17 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 N -0.26 -4.68 12.41 33.29 0.41 -4.27 16 22 N -0.09 -1.32 9.95 60.35 0.60 -0.72 16 23 H 0.09 1.07 5.31 -51.93 -0.28 0.79 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.19 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.38 8.17 8.44 -40.82 -0.34 7.82 16 38 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -36.06 321.60 -5.11 -41.17 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.63 Total: 3.79 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.54 Total: 3.06 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 1.16 Total: -49.35 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.08 Total: -18.92 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.06 -5.11 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.432 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds