Wall clock time and date at job start Mon Mar 30 2020 04:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 6 6 N 1.46500 * 109.47473 * 59.99627 * 5 2 1 7 7 C 1.35310 * 125.87051 * 124.71354 * 6 5 2 8 8 C 1.35347 * 106.17800 * 179.91081 * 7 6 5 9 9 C 1.50706 * 126.75152 * 180.12730 * 8 7 6 10 10 N 1.46500 * 109.47204 * 95.24481 * 9 8 7 11 11 C 1.34776 * 120.00368 * 179.97438 * 10 9 8 12 12 O 1.21693 * 119.99311 * 359.97438 * 11 10 9 13 13 C 1.46372 * 120.00161 * 179.97438 * 11 10 9 14 14 H 1.08000 * 120.00359 * 359.97438 * 13 11 10 15 15 C 1.40046 * 119.99788 * 180.02562 * 13 11 10 16 16 N 1.30672 * 120.00166 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00109 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46880 * 89.99825 * 17 15 13 19 19 H 1.48492 * 109.47329 * 209.99643 * 17 15 13 20 20 H 1.48499 * 109.46722 * 330.00138 * 17 15 13 21 21 N 1.33771 * 106.49748 * 0.34841 * 8 7 6 22 22 N 1.28637 * 108.88309 * 359.77765 * 21 8 7 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 30 30 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 32 32 H 1.09002 * 109.47153 * 179.97438 * 5 2 1 33 33 H 1.09001 * 109.47289 * 299.99953 * 5 2 1 34 34 H 1.08000 * 126.91312 * 0.02562 * 7 6 5 35 35 H 1.09004 * 109.46811 * 215.23885 * 9 8 7 36 36 H 1.08997 * 109.47313 * 335.24152 * 9 8 7 37 37 H 0.97008 * 119.99655 * 359.97438 * 10 9 8 38 38 H 0.96995 * 120.00021 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0401 -0.7211 -1.2493 6 7 1.5517 -0.0305 -2.4454 7 6 2.3177 0.4474 -3.4533 8 6 1.4642 1.0030 -4.3448 9 6 1.8280 1.6710 -5.6458 10 7 1.7166 0.7030 -6.7397 11 6 1.9951 1.0793 -8.0036 12 8 2.3386 2.2233 -8.2360 13 6 1.8844 0.1119 -9.0964 14 1 1.5799 -0.9036 -8.8901 15 6 2.1743 0.5028 -10.4096 16 7 2.5431 1.7313 -10.6593 17 14 2.0337 -0.7319 -11.8044 18 1 0.6575 -0.6951 -12.3611 19 1 3.0083 -0.3875 -12.8705 20 1 2.3234 -2.0945 -11.2901 21 7 0.2346 0.8468 -3.8416 22 7 0.3206 0.2309 -2.7156 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 -1.7490 1.2492 30 1 3.1301 -0.7209 1.2493 31 1 1.6767 -0.2075 2.1392 32 1 3.1301 -0.7207 -1.2495 33 1 1.6767 -1.7488 -1.2494 34 1 3.3935 0.3943 -3.5317 35 1 1.1499 2.5048 -5.8280 36 1 2.8518 2.0407 -5.5905 37 1 1.4424 -0.2089 -6.5544 38 1 2.7436 2.0021 -11.5689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594649772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:01 Heat of formation + Delta-G solvation = 23.482040 kcal Electronic energy + Delta-G solvation = -19829.853512 eV Core-core repulsion = 16708.346409 eV Total energy + Delta-G solvation = -3121.507103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.32418 -39.39641 -38.76130 -35.69538 -34.57858 -34.18576 -32.19949 -29.06989 -28.42270 -28.23316 -27.97865 -26.69732 -23.06384 -22.57368 -21.66976 -20.14873 -19.26968 -18.08550 -17.59366 -17.32809 -16.28866 -16.00710 -15.95781 -15.59827 -15.23049 -15.12239 -14.63726 -14.42226 -13.98875 -13.78727 -13.43985 -13.11431 -13.08168 -12.95996 -12.74563 -12.70806 -12.60436 -12.40152 -12.10517 -11.99757 -11.84682 -11.64030 -11.58474 -10.92807 -10.91246 -10.36011 -9.79118 -9.49470 -8.27478 -6.84191 0.62705 1.35624 1.42790 1.43767 1.47739 1.59025 2.27706 2.48552 3.17934 3.37221 3.46200 3.62767 3.66856 3.86672 3.94479 4.13140 4.20592 4.32334 4.44478 4.54080 4.68795 4.73682 4.78676 4.87298 4.97121 4.98606 5.01222 5.06364 5.13639 5.29082 5.33550 5.37561 5.45330 5.80303 5.87996 6.17531 6.26919 6.88107 7.50786 7.52419 8.49152 8.68385 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.046750 B = 0.003342 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.787264 B = 8377.368926 C = 8561.996858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.133 4.133 5 C 0.110 3.890 6 N -0.275 5.275 7 C -0.014 4.014 8 C -0.046 4.046 9 C 0.225 3.775 10 N -0.748 5.748 11 C 0.541 3.459 12 O -0.630 6.630 13 C -0.572 4.572 14 H 0.085 0.915 15 C 0.029 3.971 16 N -0.821 5.821 17 Si 0.999 3.001 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.249 1.249 21 N -0.303 5.303 22 N -0.093 5.093 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.391 0.609 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -9.069 23.652 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.191 4.191 5 C -0.009 4.009 6 N -0.068 5.068 7 C -0.166 4.166 8 C -0.185 4.185 9 C 0.099 3.901 10 N -0.403 5.403 11 C 0.345 3.655 12 O -0.517 6.517 13 C -0.609 4.609 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.450 5.450 17 Si 0.818 3.182 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.172 1.172 21 N -0.170 5.170 22 N -0.072 5.072 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.224 0.776 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.701 -8.234 23.912 25.347 hybrid contribution 0.624 -0.247 -0.948 1.161 sum 2.324 -8.481 22.964 24.590 Atomic orbital electron populations 1.22177 0.94425 1.02516 1.02458 1.20838 0.96373 0.95908 0.94440 1.21890 1.01896 0.95132 1.01134 1.21780 1.02091 1.00427 0.94758 1.22835 1.02560 0.96599 0.78930 1.47645 1.04725 1.37074 1.17358 1.23833 1.01271 1.02121 0.89380 1.21867 0.90191 1.06922 0.99511 1.18875 0.99971 0.90608 0.80677 1.45829 1.75017 1.13356 1.06103 1.18575 0.76759 0.88037 0.82103 1.90555 1.54203 1.22819 1.84103 1.21395 1.49667 0.97987 0.91857 0.89718 1.26971 0.91430 0.97560 1.02668 1.70180 1.33423 1.19580 1.21818 0.85002 0.78875 0.78312 0.75968 1.18889 1.19509 1.17210 1.75079 1.23337 1.15034 1.03503 1.78117 1.01969 1.16348 1.10794 0.92299 0.92141 0.92289 0.91626 0.90666 0.95779 0.91235 0.90596 0.91563 0.84163 0.86800 0.75539 0.94360 0.90992 0.77613 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.04 71.98 0.58 -2.06 16 2 C -0.07 -0.88 0.84 -52.18 -0.04 -0.92 16 3 C -0.14 -2.01 8.32 71.98 0.60 -1.41 16 4 C -0.13 -0.84 8.47 71.98 0.61 -0.23 16 5 C 0.11 1.27 5.44 86.38 0.47 1.74 16 6 N -0.27 -6.01 2.67 -347.74 -0.93 -6.94 16 7 C -0.01 -0.33 11.50 83.49 0.96 0.63 16 8 C -0.05 -1.57 6.62 41.60 0.28 -1.30 16 9 C 0.22 9.36 6.23 85.63 0.53 9.89 16 10 N -0.75 -35.67 5.54 -471.13 -2.61 -38.29 16 11 C 0.54 32.30 7.75 86.36 0.67 32.97 16 12 O -0.63 -42.95 15.02 -4.33 -0.06 -43.01 16 13 C -0.57 -33.26 9.54 24.83 0.24 -33.03 16 14 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 15 C 0.03 1.63 5.50 85.30 0.47 2.10 16 16 N -0.82 -50.87 11.83 21.83 0.26 -50.61 16 17 Si 1.00 41.57 29.56 68.60 2.03 43.60 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 21 N -0.30 -11.21 12.41 -48.60 -0.60 -11.81 16 22 N -0.09 -2.81 9.95 37.02 0.37 -2.45 16 23 H 0.06 1.40 5.31 -2.39 -0.01 1.38 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.02 0.49 7.60 -2.39 -0.02 0.47 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.14 0.68 8.07 -2.39 -0.02 0.67 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.23 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.39 16.90 8.44 -92.70 -0.78 16.12 16 38 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -82.79 321.60 4.08 -78.71 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.28 Total: 22.42 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 5.36 Total: 8.39 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -3.52 Total: -110.10 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.06 Total: -43.01 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -82.79 4.08 -78.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.194 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds