Wall clock time and date at job start Mon Mar 30 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46735 * 2 1 4 4 N 1.46495 * 109.46834 * 119.99533 * 2 1 3 5 5 C 1.46496 * 120.00628 * 300.00218 * 4 2 1 6 6 C 1.50699 * 109.47598 * 270.00465 * 5 4 2 7 7 H 1.08005 * 119.99628 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00538 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99774 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00058 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47013 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46808 * 120.00120 * 10 8 6 13 13 H 1.48501 * 109.46891 * 240.00253 * 10 8 6 14 14 C 1.34774 * 119.99828 * 120.00380 * 4 2 1 15 15 O 1.21279 * 120.00472 * 179.97438 * 14 4 2 16 16 C 1.50706 * 120.00020 * 0.02562 * 14 4 2 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 4 18 18 C 1.35348 * 126.91648 * 84.67673 * 17 16 14 19 19 N 1.33767 * 106.49695 * 179.90647 * 18 17 16 20 20 N 1.28630 * 108.88957 * 0.36896 * 19 18 17 21 21 N 1.28721 * 110.17691 * 359.76970 * 20 19 18 22 22 C 1.46498 * 125.87142 * 179.97438 * 21 20 19 23 23 H 1.08995 * 109.47649 * 300.00037 * 1 2 3 24 24 H 1.08999 * 109.46857 * 60.00452 * 1 2 3 25 25 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47126 * 239.99952 * 2 1 3 27 27 H 1.09001 * 109.46826 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47309 * 299.99824 * 3 2 1 29 29 H 1.09005 * 109.47036 * 59.99712 * 3 2 1 30 30 H 1.09008 * 109.47096 * 29.99824 * 5 4 2 31 31 H 1.09003 * 109.47776 * 149.99700 * 5 4 2 32 32 H 0.97002 * 119.99965 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46953 * 299.99667 * 16 14 4 34 34 H 1.09000 * 109.47318 * 59.99264 * 16 14 4 35 35 H 1.07996 * 126.74804 * 0.05180 * 18 17 16 36 36 H 1.08999 * 109.46872 * 270.02394 * 22 21 20 37 37 H 1.09001 * 109.47095 * 30.02289 * 22 21 20 38 38 H 1.08994 * 109.47464 * 150.02372 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5430 1.0359 2.3458 8 6 2.5810 1.4110 4.2140 9 7 1.5584 1.1257 4.9902 10 14 3.8688 2.6401 4.7798 11 1 4.9101 2.7841 3.7310 12 1 3.2247 3.9561 5.0212 13 1 4.4951 2.1575 6.0369 14 6 2.7932 -1.7863 1.0726 15 8 3.1978 -2.3577 2.0628 16 6 3.1578 -2.3009 -0.2961 17 6 4.0236 -3.5265 -0.1578 18 6 3.6053 -4.8019 0.0161 19 7 4.7074 -5.5569 0.0863 20 7 5.7398 -4.7983 -0.0283 21 7 5.3759 -3.5725 -0.1764 22 6 6.2717 -2.4245 -0.3371 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 0.6903 0.2975 2.4844 31 1 1.6237 -1.0225 3.2292 32 1 1.4727 1.5539 5.8564 33 1 2.2497 -2.5577 -0.8415 34 1 3.7030 -1.5300 -0.8408 35 1 2.5829 -5.1432 0.0825 36 1 6.5122 -2.0115 0.6425 37 1 7.1887 -2.7456 -0.8312 38 1 5.7807 -1.6624 -0.9421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597041505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:41 Heat of formation + Delta-G solvation = 60.823687 kcal Electronic energy + Delta-G solvation = -20869.746748 eV Core-core repulsion = 17749.858900 eV Total energy + Delta-G solvation = -3119.887848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.08798 -39.29990 -36.11348 -34.58511 -33.09890 -32.50521 -30.94292 -28.75429 -27.84093 -26.90611 -26.52908 -23.07811 -22.39795 -21.54304 -20.70668 -18.24123 -17.19391 -16.98269 -16.52920 -16.09136 -15.34899 -15.00551 -14.50849 -14.10253 -13.72273 -13.50699 -13.33762 -13.20577 -12.98703 -12.83174 -12.42489 -11.90589 -11.78610 -11.66408 -11.52515 -11.24167 -11.01419 -10.92334 -10.74237 -10.63891 -10.47282 -10.10123 -9.93378 -9.61266 -9.26120 -8.79886 -8.48495 -7.76349 -6.09870 -4.13570 1.71273 2.48271 2.77086 3.23607 3.24261 3.32888 3.34706 3.79442 4.37535 4.40565 4.52603 4.83829 4.94652 4.96908 5.11639 5.15648 5.25119 5.28459 5.38440 5.46158 5.54258 5.63722 5.92122 5.92890 6.05601 6.15941 6.26631 6.33869 6.50488 6.68325 6.85944 7.02343 7.40050 7.46547 7.86292 8.17856 8.31521 8.67175 8.82668 8.97931 9.50726 10.98417 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.006090 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.476837 B = 4596.669579 C = 5218.967544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.505 3.495 15 O -0.530 6.530 16 C -0.073 4.073 17 C 0.013 3.987 18 C -0.038 4.038 19 N -0.273 5.273 20 N -0.093 5.093 21 N -0.285 5.285 22 C 0.080 3.920 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.186 0.814 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -1.311 -15.230 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.322 5.322 5 C 0.127 3.873 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.407 6.407 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.196 4.196 19 N -0.139 5.139 20 N -0.073 5.073 21 N -0.078 5.078 22 C -0.062 4.062 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.203 0.797 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.629 -2.527 -14.408 14.863 hybrid contribution -0.186 1.756 0.388 1.808 sum 2.444 -0.771 -14.020 14.252 Atomic orbital electron populations 1.22165 0.95379 1.01950 1.02596 1.21036 0.94361 0.94198 0.87706 1.22148 1.01238 0.95670 1.02498 1.48332 1.48932 1.26110 1.08853 1.19269 0.95983 0.95026 0.77024 1.21432 1.08891 1.23439 1.02131 0.92417 1.24927 0.95726 0.97125 0.96368 1.69932 1.29457 1.43203 1.10673 0.86507 0.81611 0.80863 0.78808 1.19900 1.20966 1.20947 1.20002 0.79947 0.81349 0.89749 1.90734 1.52930 1.57765 1.39229 1.20277 0.99420 0.93310 0.98508 1.21500 0.83997 0.98003 1.08481 1.23215 0.99828 0.89456 1.07058 1.74997 0.95841 1.26269 1.16758 1.78216 1.21925 0.87013 1.20109 1.47058 1.05931 1.08373 1.46469 1.22256 0.93903 0.84993 1.05044 0.91210 0.92186 0.92772 0.90821 0.92836 0.93156 0.89942 0.94618 0.94030 0.92765 0.86623 0.88281 0.79667 0.88698 0.88129 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.17 37.16 0.34 -1.76 16 2 C 0.13 1.85 3.17 -67.93 -0.22 1.63 16 3 C -0.16 -2.28 8.47 37.16 0.31 -1.97 16 4 N -0.59 -11.18 2.39 -167.47 -0.40 -11.58 16 5 C 0.25 5.99 4.59 -5.20 -0.02 5.97 16 6 C -0.52 -13.76 7.83 -34.44 -0.27 -14.03 16 7 H 0.06 1.51 7.63 -52.48 -0.40 1.11 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 10 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.50 9.51 7.67 -10.98 -0.08 9.43 16 15 O -0.53 -12.83 15.61 5.56 0.09 -12.74 16 16 C -0.07 -0.94 4.34 -29.03 -0.13 -1.06 16 17 C 0.01 0.20 5.49 -82.09 -0.45 -0.25 16 18 C -0.04 -0.60 11.99 -17.74 -0.21 -0.81 16 19 N -0.27 -4.90 12.41 30.23 0.38 -4.53 16 20 N -0.09 -1.62 13.17 60.35 0.79 -0.82 16 21 N -0.28 -4.23 3.74 -63.79 -0.24 -4.47 16 22 C 0.08 0.81 11.21 59.85 0.67 1.48 16 23 H 0.07 1.06 6.66 -51.93 -0.35 0.72 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.79 5.77 -51.93 -0.30 0.49 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 30 H 0.04 0.88 6.43 -51.92 -0.33 0.55 16 31 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.12 1.13 7.79 -51.93 -0.40 0.73 16 34 H 0.10 1.00 6.68 -51.93 -0.35 0.66 16 35 H 0.19 2.39 8.06 -52.49 -0.42 1.96 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.72 7.05 -51.93 -0.37 0.36 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -34.97 318.41 -4.36 -39.33 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.34 Total: -1.25 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.15 Total: 0.19 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 1.27 Total: -46.45 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.97 -4.36 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597041505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.150 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds