Wall clock time and date at job start Mon Mar 30 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.39865 * 120.00066 * 180.02562 * 14 12 2 16 16 N 1.33627 * 125.60310 * 0.02562 * 15 14 12 17 17 C 1.30866 * 109.78102 * 179.97438 * 16 15 14 18 18 N 1.34373 * 108.19836 * 359.97438 * 17 16 15 19 19 C 1.46500 * 126.76886 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47251 * 74.99564 * 19 18 17 21 21 C 1.52994 * 109.47664 * 195.00112 * 19 18 17 22 22 C 1.53002 * 109.47000 * 315.00011 * 19 18 17 23 23 N 1.31175 * 125.60331 * 179.71609 * 15 14 12 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 29 29 H 1.07995 * 125.89872 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.46834 * 60.00707 * 20 19 18 31 31 H 1.08997 * 109.47149 * 180.02562 * 20 19 18 32 32 H 1.08997 * 109.47301 * 300.00768 * 20 19 18 33 33 H 1.08998 * 109.47294 * 59.99608 * 21 19 18 34 34 H 1.08997 * 109.47490 * 179.97438 * 21 19 18 35 35 H 1.09001 * 109.47125 * 299.99724 * 21 19 18 36 36 H 1.09000 * 109.47294 * 59.99470 * 22 19 18 37 37 H 1.08997 * 109.47276 * 179.97438 * 22 19 18 38 38 H 1.09004 * 109.47266 * 299.99820 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1727 -0.9093 -3.5966 16 7 2.9434 -2.0009 -3.6045 17 6 3.1943 -2.3570 -4.8386 18 7 2.5799 -1.4882 -5.6592 19 6 2.5926 -1.5065 -7.1240 20 6 1.6749 -2.6221 -7.6282 21 6 2.0976 -0.1598 -7.6553 22 6 4.0187 -1.7567 -7.6186 23 7 1.9201 -0.5613 -4.8359 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 1.1489 0.5386 -2.5435 29 1 3.7918 -3.2029 -5.1446 30 1 0.6589 -2.4438 -7.2759 31 1 1.6847 -2.6360 -8.7180 32 1 2.0276 -3.5815 -7.2497 33 1 2.7513 0.6350 -7.2962 34 1 2.1074 -0.1733 -8.7451 35 1 1.0816 0.0185 -7.3030 36 1 4.3714 -2.7161 -7.2401 37 1 4.0281 -1.7708 -8.7084 38 1 4.6725 -0.9619 -7.2594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597494069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:09 Heat of formation + Delta-G solvation = 57.310135 kcal Electronic energy + Delta-G solvation = -20187.581256 eV Core-core repulsion = 17067.541049 eV Total energy + Delta-G solvation = -3120.040207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91277 -38.83958 -37.20795 -33.95221 -33.73243 -31.20651 -30.70055 -29.57157 -27.80220 -27.63734 -25.12807 -23.56021 -22.97913 -20.95974 -20.10678 -18.91272 -17.39280 -16.40985 -16.07788 -15.79297 -15.40850 -14.59206 -14.46293 -14.34622 -14.11181 -13.66390 -13.04398 -12.88807 -12.77670 -12.61705 -12.47521 -12.12339 -11.91991 -11.69645 -11.50383 -11.13497 -10.98274 -10.76147 -10.68684 -10.46171 -10.15683 -9.95323 -9.59616 -9.55443 -8.97688 -8.59703 -8.31531 -8.17223 -6.02101 -4.05254 1.82486 2.23402 3.14183 3.36798 3.41717 3.44049 3.52808 4.00369 4.17411 4.41622 4.47564 4.51967 4.59865 5.04855 5.09021 5.26014 5.27528 5.29509 5.31733 5.42815 5.47944 5.61556 5.81155 5.84762 6.02810 6.17378 6.54890 6.62091 6.82641 6.90476 6.96074 7.24302 7.45782 7.69176 7.84073 8.05722 8.28093 8.65815 9.03966 9.17286 9.60291 11.05681 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.047031 B = 0.003868 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.213008 B = 7238.063368 C = 7574.955851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.037 3.963 3 H 0.057 0.943 4 C -0.501 4.501 5 H 0.076 0.924 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.515 3.485 13 O -0.483 6.483 14 N -0.641 5.641 15 C 0.457 3.543 16 N -0.516 5.516 17 C 0.259 3.741 18 N -0.376 5.376 19 C 0.181 3.819 20 C -0.159 4.159 21 C -0.142 4.142 22 C -0.159 4.159 23 N -0.354 5.354 24 H 0.033 0.967 25 H 0.096 0.904 26 H 0.013 0.987 27 H 0.261 0.739 28 H 0.417 0.583 29 H 0.213 0.787 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -2.775 -22.051 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.075 0.925 4 C -0.540 4.540 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.303 3.697 13 O -0.349 6.349 14 N -0.296 5.296 15 C 0.088 3.912 16 N -0.246 5.246 17 C -0.038 4.038 18 N -0.170 5.170 19 C 0.097 3.903 20 C -0.217 4.217 21 C -0.200 4.200 22 C -0.218 4.218 23 N -0.190 5.190 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.254 0.746 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.798 -2.962 -21.651 21.926 hybrid contribution 0.116 -0.184 0.510 0.554 sum 1.914 -3.145 -21.141 21.459 Atomic orbital electron populations 1.21783 0.96248 1.00087 1.01175 1.18912 0.94327 0.96948 0.88246 0.92509 1.21135 1.31138 1.12938 0.88779 0.90588 1.24940 0.95042 0.95077 0.99125 1.69875 1.37012 1.23071 1.23616 0.86412 0.78409 0.80299 0.81885 1.20643 1.21305 1.19669 1.22457 0.79156 0.85011 0.83097 1.90652 1.34407 1.24759 1.85122 1.43596 1.52935 1.31147 1.01963 1.20768 0.93073 0.90464 0.86920 1.70714 1.19900 1.14322 1.19670 1.25957 0.96597 0.96235 0.85040 1.50430 1.38744 1.21347 1.06500 1.20728 0.96940 0.98186 0.74492 1.22264 1.00054 0.97540 1.01860 1.21900 1.03099 0.94508 1.00481 1.22251 0.94136 1.03022 1.02368 1.78096 1.25034 1.16003 0.99876 0.94783 0.88547 0.96774 0.92910 0.74598 0.77108 0.91528 0.90400 0.91732 0.91612 0.91161 0.90953 0.91475 0.90017 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.87 37.16 0.33 -2.81 16 2 C 0.04 0.94 2.64 -92.92 -0.25 0.69 16 3 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.08 2.30 6.75 -52.48 -0.35 1.95 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.51 12.47 7.11 -10.99 -0.08 12.39 16 13 O -0.48 -13.30 14.13 5.55 0.08 -13.22 16 14 N -0.64 -12.95 5.33 -12.82 -0.07 -13.02 16 15 C 0.46 9.05 8.81 -320.85 -2.83 6.22 16 16 N -0.52 -10.33 9.37 -14.92 -0.14 -10.47 16 17 C 0.26 3.71 11.79 -90.68 -1.07 2.64 16 18 N -0.38 -5.00 3.44 -49.89 -0.17 -5.17 16 19 C 0.18 1.58 1.25 -131.82 -0.16 1.42 16 20 C -0.16 -1.13 8.74 37.16 0.32 -0.81 16 21 C -0.14 -1.21 8.12 37.15 0.30 -0.90 16 22 C -0.16 -1.00 8.30 37.16 0.31 -0.69 16 23 N -0.35 -5.98 11.86 30.04 0.36 -5.63 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.42 7.17 8.24 -40.82 -0.34 6.83 16 29 H 0.21 1.97 7.60 -52.49 -0.40 1.57 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.07 0.36 7.43 -51.93 -0.39 -0.03 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -34.79 318.94 -8.58 -43.36 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.54 Total: 1.89 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.50 Total: 5.04 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.60 Total: -58.87 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.79 -8.58 -43.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597494069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.671 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds