Wall clock time and date at job start Mon Mar 30 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.39865 * 120.00066 * 180.02562 * 14 12 2 16 16 N 1.33627 * 125.60310 * 0.02562 * 15 14 12 17 17 C 1.30866 * 109.78102 * 179.97438 * 16 15 14 18 18 N 1.34373 * 108.19836 * 359.97438 * 17 16 15 19 19 C 1.46500 * 126.76886 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47251 * 74.99564 * 19 18 17 21 21 C 1.52994 * 109.47664 * 195.00112 * 19 18 17 22 22 C 1.53002 * 109.47000 * 315.00011 * 19 18 17 23 23 N 1.31175 * 125.60331 * 179.71609 * 15 14 12 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 29 29 H 1.07995 * 125.89872 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.46834 * 60.00707 * 20 19 18 31 31 H 1.08997 * 109.47149 * 180.02562 * 20 19 18 32 32 H 1.08997 * 109.47301 * 300.00768 * 20 19 18 33 33 H 1.08998 * 109.47294 * 59.99608 * 21 19 18 34 34 H 1.08997 * 109.47490 * 179.97438 * 21 19 18 35 35 H 1.09001 * 109.47125 * 299.99724 * 21 19 18 36 36 H 1.09000 * 109.47294 * 59.99470 * 22 19 18 37 37 H 1.08997 * 109.47276 * 179.97438 * 22 19 18 38 38 H 1.09004 * 109.47266 * 299.99820 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1727 -0.9093 -3.5966 16 7 2.9434 -2.0009 -3.6045 17 6 3.1943 -2.3570 -4.8386 18 7 2.5799 -1.4882 -5.6592 19 6 2.5926 -1.5065 -7.1240 20 6 1.6749 -2.6221 -7.6282 21 6 2.0976 -0.1598 -7.6553 22 6 4.0187 -1.7567 -7.6186 23 7 1.9201 -0.5613 -4.8359 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 1.1489 0.5386 -2.5435 29 1 3.7918 -3.2029 -5.1446 30 1 0.6589 -2.4438 -7.2759 31 1 1.6847 -2.6360 -8.7180 32 1 2.0276 -3.5815 -7.2497 33 1 2.7513 0.6350 -7.2962 34 1 2.1074 -0.1733 -8.7451 35 1 1.0816 0.0185 -7.3030 36 1 4.3714 -2.7161 -7.2401 37 1 4.0281 -1.7708 -8.7084 38 1 4.6725 -0.9619 -7.2594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597494069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:09 Heat of formation + Delta-G solvation = 36.759117 kcal Electronic energy + Delta-G solvation = -20188.472415 eV Core-core repulsion = 17067.541049 eV Total energy + Delta-G solvation = -3120.931366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.16645 -40.61464 -38.10199 -35.80376 -35.59028 -32.61350 -32.45033 -30.93389 -28.32105 -28.31042 -27.22025 -25.26502 -24.20290 -22.58584 -21.27467 -20.39732 -18.80667 -18.17733 -17.60860 -17.01641 -16.99224 -16.47910 -15.84669 -15.45170 -15.03579 -14.90552 -14.86042 -14.44843 -13.60698 -13.57341 -13.29021 -13.18623 -12.99882 -12.94343 -12.73783 -12.70873 -12.60373 -12.44184 -12.21630 -12.01888 -11.87656 -11.72943 -11.08642 -11.00157 -10.82782 -10.57225 -10.30699 -9.60242 -8.15651 -6.26157 0.58095 1.11834 1.42877 1.43227 1.55881 1.59055 2.07137 2.33677 2.46291 3.14498 3.35696 3.57863 3.78737 3.89603 4.01224 4.21352 4.50576 4.64212 4.64957 4.71754 4.74441 4.82951 4.85913 4.87850 4.90826 4.97336 5.11296 5.21377 5.27713 5.36729 5.45590 5.66259 5.73959 5.85642 6.02052 6.14763 6.38258 6.80939 7.22460 7.36276 7.46835 8.90643 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.047031 B = 0.003868 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.213008 B = 7238.063368 C = 7574.955851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.522 3.478 13 O -0.524 6.524 14 N -0.630 5.630 15 C 0.427 3.573 16 N -0.575 5.575 17 C 0.269 3.731 18 N -0.363 5.363 19 C 0.167 3.833 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.155 4.155 23 N -0.353 5.353 24 H 0.023 0.977 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.266 0.734 28 H 0.429 0.571 29 H 0.259 0.741 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 -3.371 -24.357 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.310 3.690 13 O -0.394 6.394 14 N -0.286 5.286 15 C 0.058 3.942 16 N -0.306 5.306 17 C -0.028 4.028 18 N -0.156 5.156 19 C 0.085 3.915 20 C -0.212 4.212 21 C -0.198 4.198 22 C -0.213 4.213 23 N -0.190 5.190 24 H 0.043 0.957 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.268 0.732 29 H 0.275 0.725 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.049 -3.520 -24.038 24.381 hybrid contribution 0.037 0.015 0.995 0.995 sum 2.086 -3.505 -23.044 23.402 Atomic orbital electron populations 1.21600 0.94677 0.99656 1.02046 1.18828 0.95545 0.96135 0.88153 0.93233 1.21244 1.31909 1.12899 0.90820 0.93162 1.25584 0.95066 0.95739 1.01380 1.69947 1.36990 1.23481 1.24469 0.85547 0.78382 0.78749 0.78922 1.19960 1.19818 1.20379 1.22062 0.78627 0.84324 0.84006 1.90619 1.36334 1.26489 1.85993 1.43044 1.52671 1.31315 1.01524 1.20799 0.94795 0.91477 0.87152 1.70603 1.21549 1.15376 1.23085 1.26671 0.95775 0.96698 0.83644 1.50855 1.36873 1.19810 1.08048 1.21345 0.99430 0.99100 0.71592 1.22270 0.98200 0.96910 1.03861 1.21922 1.01374 0.93889 1.02660 1.22284 0.91560 1.03230 1.04257 1.77994 1.24929 1.16955 0.99116 0.95742 0.90433 0.92997 0.92452 0.73187 0.72510 0.93628 0.87139 0.90952 0.93201 0.87676 0.92939 0.90048 0.86941 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.87 71.98 0.64 -5.07 16 2 C 0.03 1.81 2.64 -12.29 -0.03 1.78 16 3 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.53 -31.32 8.37 25.60 0.21 -31.11 16 5 H 0.05 3.18 6.75 -2.91 -0.02 3.16 16 6 C 0.02 1.23 5.30 84.65 0.45 1.68 16 7 N -0.91 -51.37 11.32 21.45 0.24 -51.12 16 8 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 C 0.52 26.08 7.11 87.66 0.62 26.70 16 13 O -0.52 -30.05 14.13 -3.05 -0.04 -30.09 16 14 N -0.63 -25.97 5.33 -312.86 -1.67 -27.64 16 15 C 0.43 17.10 8.81 260.80 2.30 19.39 16 16 N -0.57 -23.11 9.37 -201.13 -1.89 -24.99 16 17 C 0.27 7.26 11.79 180.37 2.13 9.39 16 18 N -0.36 -9.07 3.44 -311.77 -1.07 -10.14 16 19 C 0.17 2.45 1.25 3.60 0.00 2.45 16 20 C -0.15 -1.68 8.74 71.98 0.63 -1.05 16 21 C -0.14 -2.08 8.12 71.98 0.58 -1.50 16 22 C -0.16 -1.34 8.30 71.98 0.60 -0.74 16 23 N -0.35 -11.82 11.86 -58.89 -0.70 -12.52 16 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 3.95 6.07 -2.39 -0.01 3.93 16 26 H 0.05 1.98 7.56 -2.39 -0.02 1.96 16 27 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 28 H 0.43 14.86 8.24 -92.71 -0.76 14.10 16 29 H 0.26 3.98 7.60 -2.91 -0.02 3.96 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.08 0.50 7.43 -2.39 -0.02 0.49 16 37 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -78.44 318.94 5.33 -73.11 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.30 Total: 13.93 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 8.13 Total: 21.93 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -5.08 Total: -126.42 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.04 Total: -30.09 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -78.44 5.33 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597494069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.869 kcal (2) G-P(sol) polarization free energy of solvation -78.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds