Wall clock time and date at job start Mon Mar 30 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30712 * 125.52347 * 299.69131 * 4 2 1 6 6 N 1.40447 * 106.79115 * 179.86008 * 5 4 2 7 7 H 0.96998 * 126.82161 * 180.16483 * 6 5 4 8 8 C 1.34430 * 106.35370 * 0.39838 * 6 5 4 9 9 C 1.50694 * 125.96047 * 179.73699 * 8 6 5 10 10 N 1.46496 * 109.47138 * 95.02623 * 9 8 6 11 11 C 1.34781 * 120.00260 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00239 * 179.97438 * 11 10 9 14 14 H 1.09004 * 109.47104 * 300.00072 * 13 11 10 15 15 C 1.52998 * 109.47145 * 59.99969 * 13 11 10 16 16 C 1.50694 * 109.47117 * 180.02562 * 13 11 10 17 17 H 1.08000 * 120.00058 * 0.02562 * 16 13 11 18 18 C 1.37884 * 120.00150 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00103 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 119.99667 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47455 * 90.00260 * 20 18 16 22 22 H 1.48502 * 109.46868 * 209.99973 * 20 18 16 23 23 H 1.48500 * 109.47378 * 329.99861 * 20 18 16 24 24 N 1.30830 * 108.07545 * 359.75741 * 8 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09004 * 109.47047 * 215.02541 * 9 8 6 33 33 H 1.08999 * 109.47548 * 335.02754 * 9 8 6 34 34 H 0.96999 * 120.00427 * 359.97438 * 10 9 8 35 35 H 1.09001 * 109.47492 * 179.97438 * 15 13 11 36 36 H 1.08994 * 109.47345 * 300.00307 * 15 13 11 37 37 H 1.09004 * 109.47036 * 60.00061 * 15 13 11 38 38 H 0.97000 * 119.99877 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7887 -0.3561 2.4648 6 7 2.4401 -1.2871 3.2903 7 1 2.4480 -1.2985 4.2602 8 6 3.0546 -2.1562 2.4693 9 6 3.8896 -3.3364 2.8946 10 7 3.0566 -4.5413 2.9168 11 6 3.5941 -5.7258 3.2696 12 8 4.7674 -5.7941 3.5693 13 6 2.7372 -6.9652 3.2930 14 1 1.9179 -6.8271 3.9986 15 6 2.1691 -7.2188 1.8952 16 6 3.5722 -8.1453 3.7182 17 1 4.6187 -8.0113 3.9489 18 6 3.0002 -9.3964 3.8127 19 7 3.7290 -10.4264 4.1833 20 14 1.1899 -9.6280 3.4143 21 1 1.0367 -9.9399 1.9706 22 1 0.6445 -10.7477 4.2232 23 1 0.4494 -8.3808 3.7327 24 7 2.8016 -1.7984 1.2366 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 4.7094 -3.4743 2.1896 33 1 4.2935 -3.1556 3.8907 34 1 2.1182 -4.4867 2.6775 35 1 1.5496 -8.1155 1.9119 36 1 1.5651 -6.3651 1.5880 37 1 2.9884 -7.3568 1.1896 38 1 3.3267 -11.3065 4.2494 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597713782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:20 Heat of formation + Delta-G solvation = 38.010577 kcal Electronic energy + Delta-G solvation = -19778.607792 eV Core-core repulsion = 16657.730694 eV Total energy + Delta-G solvation = -3120.877099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.43776 -39.06345 -36.14116 -34.51894 -33.87890 -32.42589 -31.53172 -30.71726 -27.45089 -27.01064 -25.15796 -24.01341 -22.76108 -21.16535 -19.89037 -19.61170 -18.23336 -16.82530 -16.37920 -15.97559 -15.22104 -15.19017 -14.83157 -14.66539 -14.35773 -13.65942 -13.42587 -13.34248 -12.98551 -12.52986 -12.47896 -12.31148 -12.12156 -11.79677 -11.61253 -11.55654 -11.24909 -10.99968 -10.64791 -10.35381 -10.28550 -10.23579 -9.84826 -9.66559 -9.13569 -8.82636 -8.79914 -8.59692 -6.07634 -4.08407 1.26142 2.34979 2.57806 3.22330 3.29124 3.35141 3.44237 3.55460 3.82125 4.28822 4.35707 4.45201 4.79726 4.83697 5.03920 5.21639 5.31128 5.34560 5.46367 5.53916 5.56860 5.65309 5.80385 5.93262 5.95344 6.01014 6.10303 6.22462 6.27988 6.41693 6.64502 6.69066 6.77790 7.13066 7.48982 7.86669 7.94204 8.50360 8.93634 9.11601 9.50899 11.05218 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.032437 B = 0.003863 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.017242 B = 7246.827293 C = 7754.608276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.143 4.143 4 C 0.231 3.769 5 N -0.308 5.308 6 N -0.473 5.473 7 H 0.443 0.557 8 C 0.277 3.723 9 C 0.199 3.801 10 N -0.743 5.743 11 C 0.533 3.467 12 O -0.525 6.525 13 C -0.002 4.002 14 H 0.053 0.947 15 C -0.145 4.145 16 C -0.508 4.508 17 H 0.094 0.906 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.884 3.116 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.268 1.268 24 N -0.522 5.522 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.399 0.601 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.059 0.941 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 21.585 -6.256 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.201 4.201 4 C -0.052 4.052 5 N -0.137 5.137 6 N -0.192 5.192 7 H 0.289 0.711 8 C -0.002 4.002 9 C 0.073 3.927 10 N -0.400 5.400 11 C 0.322 3.678 12 O -0.399 6.399 13 C -0.023 4.023 14 H 0.070 0.930 15 C -0.203 4.203 16 C -0.546 4.546 17 H 0.112 0.888 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.193 1.193 24 N -0.251 5.251 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.233 0.767 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.513 21.775 -6.120 23.538 hybrid contribution -1.338 -0.378 0.429 1.455 sum -7.851 21.397 -5.691 23.492 Atomic orbital electron populations 1.21829 0.93206 1.02503 1.02616 1.19545 0.96136 0.95178 0.91444 1.21823 1.01358 0.94281 1.02627 1.24285 0.94944 0.92287 0.93667 1.77943 1.20099 1.13403 1.02252 1.48075 1.39068 1.21411 1.10639 0.71134 1.24402 0.95328 0.94223 0.86254 1.19584 0.91637 0.78878 1.02623 1.46241 1.13593 1.07000 1.73214 1.21358 0.88892 0.83496 0.74070 1.90606 1.17241 1.85404 1.46620 1.19310 0.96000 0.91961 0.95074 0.92963 1.22123 1.00203 0.99492 0.98456 1.20930 0.98728 0.89537 1.45393 0.88774 1.24974 0.97483 0.95834 0.94765 1.69878 1.36025 0.99882 1.47481 0.86916 0.86183 0.77570 0.77873 1.20434 1.22298 1.19326 1.70438 1.19512 1.14901 1.20258 0.91451 0.91941 0.92327 0.88303 0.92442 0.91451 0.91946 0.87914 0.89408 0.76724 0.93238 0.94809 0.92153 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.09 9.17 37.15 0.34 -0.75 16 4 C 0.23 2.83 6.65 -156.85 -1.04 1.79 16 5 N -0.31 -3.75 12.80 32.42 0.41 -3.33 16 6 N -0.47 -5.05 7.45 32.62 0.24 -4.81 16 7 H 0.44 3.38 8.96 -182.34 -1.63 1.74 16 8 C 0.28 3.39 7.60 -155.70 -1.18 2.21 16 9 C 0.20 2.57 6.30 -5.20 -0.03 2.54 16 10 N -0.74 -11.43 5.44 -61.48 -0.33 -11.76 16 11 C 0.53 11.05 7.15 -10.98 -0.08 10.97 16 12 O -0.53 -12.81 15.46 5.56 0.09 -12.73 16 13 C 0.00 -0.04 2.23 -92.93 -0.21 -0.25 16 14 H 0.05 1.15 7.20 -51.93 -0.37 0.77 16 15 C -0.15 -2.95 8.57 37.16 0.32 -2.63 16 16 C -0.51 -14.40 8.96 -34.44 -0.31 -14.71 16 17 H 0.09 3.03 7.00 -52.49 -0.37 2.67 16 18 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 19 N -0.89 -27.38 13.96 55.43 0.77 -26.60 16 20 Si 0.88 21.09 24.37 -169.99 -4.14 16.94 16 21 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 22 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -5.93 6.53 56.52 0.37 -5.56 16 24 N -0.52 -7.15 11.19 -8.16 -0.09 -7.24 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 5.49 7.88 -40.82 -0.32 5.16 16 35 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 36 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -34.18 317.41 -7.20 -41.38 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.67 Total: 3.39 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.26 Total: -0.02 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 1.01 Total: -53.75 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.18 -7.20 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597713782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.391 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds