Wall clock time and date at job start Mon Mar 30 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30712 * 125.52347 * 299.69131 * 4 2 1 6 6 N 1.40447 * 106.79115 * 179.86008 * 5 4 2 7 7 H 0.96998 * 126.82161 * 180.16483 * 6 5 4 8 8 C 1.34430 * 106.35370 * 0.39838 * 6 5 4 9 9 C 1.50694 * 125.96047 * 179.73699 * 8 6 5 10 10 N 1.46496 * 109.47138 * 95.02623 * 9 8 6 11 11 C 1.34781 * 120.00260 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00239 * 179.97438 * 11 10 9 14 14 H 1.09004 * 109.47104 * 300.00072 * 13 11 10 15 15 C 1.52998 * 109.47145 * 59.99969 * 13 11 10 16 16 C 1.50694 * 109.47117 * 180.02562 * 13 11 10 17 17 H 1.08000 * 120.00058 * 0.02562 * 16 13 11 18 18 C 1.37884 * 120.00150 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00103 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 119.99667 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47455 * 90.00260 * 20 18 16 22 22 H 1.48502 * 109.46868 * 209.99973 * 20 18 16 23 23 H 1.48500 * 109.47378 * 329.99861 * 20 18 16 24 24 N 1.30830 * 108.07545 * 359.75741 * 8 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09004 * 109.47047 * 215.02541 * 9 8 6 33 33 H 1.08999 * 109.47548 * 335.02754 * 9 8 6 34 34 H 0.96999 * 120.00427 * 359.97438 * 10 9 8 35 35 H 1.09001 * 109.47492 * 179.97438 * 15 13 11 36 36 H 1.08994 * 109.47345 * 300.00307 * 15 13 11 37 37 H 1.09004 * 109.47036 * 60.00061 * 15 13 11 38 38 H 0.97000 * 119.99877 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7887 -0.3561 2.4648 6 7 2.4401 -1.2871 3.2903 7 1 2.4480 -1.2985 4.2602 8 6 3.0546 -2.1562 2.4693 9 6 3.8896 -3.3364 2.8946 10 7 3.0566 -4.5413 2.9168 11 6 3.5941 -5.7258 3.2696 12 8 4.7674 -5.7941 3.5693 13 6 2.7372 -6.9652 3.2930 14 1 1.9179 -6.8271 3.9986 15 6 2.1691 -7.2188 1.8952 16 6 3.5722 -8.1453 3.7182 17 1 4.6187 -8.0113 3.9489 18 6 3.0002 -9.3964 3.8127 19 7 3.7290 -10.4264 4.1833 20 14 1.1899 -9.6280 3.4143 21 1 1.0367 -9.9399 1.9706 22 1 0.6445 -10.7477 4.2232 23 1 0.4494 -8.3808 3.7327 24 7 2.8016 -1.7984 1.2366 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 4.7094 -3.4743 2.1896 33 1 4.2935 -3.1556 3.8907 34 1 2.1182 -4.4867 2.6775 35 1 1.5496 -8.1155 1.9119 36 1 1.5651 -6.3651 1.5880 37 1 2.9884 -7.3568 1.1896 38 1 3.3267 -11.3065 4.2494 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597713782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:20 Heat of formation + Delta-G solvation = 11.717906 kcal Electronic energy + Delta-G solvation = -19779.747928 eV Core-core repulsion = 16657.730694 eV Total energy + Delta-G solvation = -3122.017234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.36803 -40.68031 -36.95904 -35.86367 -35.74832 -33.45050 -33.30590 -31.89913 -28.21669 -28.03730 -27.09297 -24.85130 -24.42850 -22.17727 -21.23886 -20.64900 -19.22193 -18.80716 -17.84692 -17.35592 -16.61350 -16.35521 -16.06802 -15.85180 -15.41822 -14.99270 -14.90805 -14.53038 -14.11801 -13.96231 -13.93360 -13.42678 -13.14353 -13.03413 -12.78373 -12.53671 -12.44957 -12.20062 -12.14554 -11.91612 -11.47180 -11.23219 -11.21183 -11.17672 -10.87011 -10.74502 -10.42716 -10.18513 -8.25855 -6.33629 0.30650 1.35345 1.40667 1.47070 1.51831 1.62564 1.80191 2.35081 2.40598 2.76760 3.08047 3.44566 3.57366 4.04272 4.08544 4.20018 4.30632 4.42916 4.46850 4.49900 4.61606 4.78154 4.80989 4.89525 4.95559 5.00820 5.01463 5.14815 5.25708 5.30432 5.34167 5.44351 5.45146 5.52846 5.98416 6.24540 6.56895 6.82970 6.94798 7.26254 7.40472 8.91647 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.032437 B = 0.003863 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.017242 B = 7246.827293 C = 7754.608276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.006 4.006 3 C -0.137 4.137 4 C 0.223 3.777 5 N -0.316 5.316 6 N -0.460 5.460 7 H 0.456 0.544 8 C 0.278 3.722 9 C 0.204 3.796 10 N -0.719 5.719 11 C 0.537 3.463 12 O -0.573 6.573 13 C -0.007 4.007 14 H 0.072 0.928 15 C -0.140 4.140 16 C -0.521 4.521 17 H 0.034 0.966 18 C 0.008 3.992 19 N -0.952 5.952 20 Si 0.957 3.043 21 H -0.263 1.263 22 H -0.301 1.301 23 H -0.231 1.231 24 N -0.546 5.546 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.412 0.588 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 23.723 -7.410 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.195 4.195 4 C -0.059 4.059 5 N -0.146 5.146 6 N -0.180 5.180 7 H 0.305 0.695 8 C -0.002 4.002 9 C 0.078 3.922 10 N -0.375 5.375 11 C 0.325 3.675 12 O -0.450 6.450 13 C -0.029 4.029 14 H 0.090 0.910 15 C -0.198 4.198 16 C -0.559 4.559 17 H 0.053 0.947 18 C -0.189 4.189 19 N -0.592 5.592 20 Si 0.782 3.218 21 H -0.188 1.188 22 H -0.229 1.229 23 H -0.154 1.154 24 N -0.276 5.276 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.499 23.986 -7.278 26.806 hybrid contribution -0.312 -0.960 0.814 1.297 sum -9.810 23.026 -6.463 25.850 Atomic orbital electron populations 1.21794 0.92159 1.02134 1.03467 1.19742 0.96952 0.95698 0.90287 1.21788 1.00779 0.93438 1.03487 1.24858 0.94522 0.91996 0.94565 1.77929 1.20405 1.13778 1.02481 1.48027 1.38129 1.20609 1.11282 0.69544 1.24049 0.95552 0.94212 0.86343 1.19600 0.91094 0.77961 1.03576 1.45826 1.14271 1.06286 1.71138 1.20964 0.87908 0.84523 0.74067 1.90600 1.19087 1.86234 1.49108 1.19258 0.95857 0.90776 0.96967 0.91028 1.22026 1.00273 1.01288 0.96192 1.21106 0.97037 0.92293 1.45470 0.94747 1.25992 1.03490 0.95051 0.94329 1.70070 1.38916 1.00700 1.49520 0.85741 0.79077 0.78752 0.78189 1.18846 1.22860 1.15405 1.70425 1.20276 1.15831 1.21064 0.89183 0.92505 0.93254 0.88084 0.93279 0.89156 0.92503 0.88586 0.87664 0.75211 0.93641 0.90102 0.93325 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.18 71.98 0.66 -1.19 16 2 C -0.01 -0.09 3.39 -11.54 -0.04 -0.13 16 3 C -0.14 -1.80 9.17 71.98 0.66 -1.14 16 4 C 0.22 5.04 6.65 138.63 0.92 5.96 16 5 N -0.32 -7.05 12.80 -51.33 -0.66 -7.71 16 6 N -0.46 -8.76 7.45 -50.71 -0.38 -9.14 16 7 H 0.46 5.81 8.96 -213.10 -1.91 3.90 16 8 C 0.28 6.21 7.60 138.22 1.05 7.26 16 9 C 0.20 4.90 6.30 85.63 0.54 5.44 16 10 N -0.72 -20.49 5.44 -466.80 -2.54 -23.02 16 11 C 0.54 21.85 7.15 87.66 0.63 22.48 16 12 O -0.57 -28.65 15.46 -3.04 -0.05 -28.69 16 13 C -0.01 -0.30 2.23 -12.29 -0.03 -0.33 16 14 H 0.07 2.90 7.20 -2.39 -0.02 2.88 16 15 C -0.14 -5.27 8.57 71.98 0.62 -4.65 16 16 C -0.52 -30.37 8.96 25.60 0.23 -30.14 16 17 H 0.03 2.36 7.00 -2.91 -0.02 2.34 16 18 C 0.01 0.46 5.45 84.66 0.46 0.92 16 19 N -0.95 -60.46 13.96 21.45 0.30 -60.17 16 20 Si 0.96 42.51 24.37 68.60 1.67 44.18 16 21 H -0.26 -11.00 6.87 99.48 0.68 -10.32 16 22 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.23 -8.82 6.53 99.48 0.65 -8.17 16 24 N -0.55 -13.92 11.19 -179.73 -2.01 -15.93 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.41 9.82 7.88 -92.71 -0.73 9.09 16 35 H 0.05 1.75 3.27 -2.39 -0.01 1.74 16 36 H 0.08 2.27 7.56 -2.39 -0.02 2.25 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -77.81 317.41 0.41 -77.40 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -1.63 Total: 18.60 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.70 Total: 4.48 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -5.29 Total: -115.97 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.69 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.67 Total: 44.18 kcal Total: -77.81 0.41 -77.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597713782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.120 kcal (2) G-P(sol) polarization free energy of solvation -77.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds