Wall clock time and date at job start Mon Mar 30 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86798 * 119.99782 * 2 1 4 4 H 1.48505 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47044 * 299.99296 * 3 2 1 6 6 H 1.48495 * 109.47500 * 60.00188 * 3 2 1 7 7 C 1.37873 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99448 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00432 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.46910 * 305.00090 * 12 11 10 14 14 N 1.46899 * 109.47285 * 64.99779 * 12 11 10 15 15 C 1.50699 * 109.47314 * 184.99952 * 12 11 10 16 16 O 1.21275 * 120.00242 * 260.00446 * 15 12 11 17 17 N 1.34772 * 119.99712 * 79.99619 * 15 12 11 18 18 C 1.50239 * 130.83914 * 180.02562 * 17 15 12 19 19 C 1.55846 * 101.05244 * 233.99464 * 18 17 15 20 20 C 1.54853 * 103.58572 * 326.98013 * 19 18 17 21 21 C 1.50240 * 130.84170 * 0.03465 * 17 15 12 22 22 C 1.55848 * 101.05223 * 233.94148 * 21 17 15 23 23 C 1.54853 * 103.44271 * 327.06424 * 22 21 17 24 24 H 0.97000 * 119.99509 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47483 * 59.99772 * 9 7 2 26 26 H 1.08999 * 109.46978 * 299.99896 * 9 7 2 27 27 H 1.09000 * 109.47211 * 60.00303 * 10 9 7 28 28 H 1.08999 * 109.47166 * 299.99893 * 10 9 7 29 29 H 1.09000 * 109.46719 * 60.00100 * 11 10 9 30 30 H 1.08999 * 109.47062 * 300.00055 * 11 10 9 31 31 H 1.00903 * 111.00166 * 296.05375 * 14 12 11 32 32 H 1.00901 * 110.99613 * 59.99928 * 14 12 11 33 33 H 1.09008 * 115.85480 * 359.66424 * 18 17 15 34 34 H 1.09002 * 110.62915 * 85.55029 * 19 18 17 35 35 H 1.08994 * 110.62469 * 208.41013 * 19 18 17 36 36 H 1.08998 * 110.62783 * 118.56957 * 20 19 18 37 37 H 1.08998 * 110.62556 * 241.59208 * 20 19 18 38 38 H 1.08999 * 115.85638 * 359.61827 * 21 17 15 39 39 H 1.09005 * 110.62147 * 85.54727 * 22 21 17 40 40 H 1.08990 * 110.63004 * 208.41380 * 22 21 17 41 41 H 1.09005 * 110.62400 * 241.50479 * 23 22 21 42 42 H 1.08998 * 110.62876 * 118.48908 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0005 13 1 3.1579 -6.0432 -0.8418 14 7 3.2385 -6.1418 1.2552 15 6 1.7249 -7.4517 -0.1227 16 8 1.5133 -8.1252 0.8634 17 7 1.2897 -7.8671 -1.3286 18 6 0.5312 -9.1010 -1.7278 19 6 1.4570 -9.6729 -2.8435 20 6 2.0589 -8.4068 -3.5012 21 6 1.4139 -7.2390 -2.6878 22 6 -0.0773 -7.2079 -3.1399 23 6 -0.6782 -8.4765 -2.4859 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.8002 -5.3071 1.3310 32 1 2.6267 -6.2396 2.0516 33 1 0.2868 -9.7909 -0.9200 34 1 2.2432 -10.2914 -2.4104 35 1 0.8769 -10.2435 -3.5686 36 1 3.1436 -8.3973 -3.3944 37 1 1.7750 -8.3481 -4.5519 38 1 1.9362 -6.2830 -2.7238 39 1 -0.5731 -6.3119 -2.7665 40 1 -0.1504 -7.2615 -4.2260 41 1 -1.0495 -9.1620 -3.2477 42 1 -1.4721 -8.2096 -1.7884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709473024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:55 Heat of formation + Delta-G solvation = -38.587945 kcal Electronic energy + Delta-G solvation = -20777.607357 eV Core-core repulsion = 17756.949041 eV Total energy + Delta-G solvation = -3020.658316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85395 -38.51713 -35.89808 -33.35300 -31.57280 -31.23861 -30.68213 -29.68609 -27.78237 -25.47247 -23.26271 -22.36957 -21.78169 -20.19129 -19.75844 -18.86655 -17.57036 -16.33910 -15.91799 -15.53998 -15.40317 -14.87707 -14.52796 -14.23080 -14.03183 -13.37280 -13.14098 -12.92942 -12.73141 -12.47862 -12.32553 -12.00188 -11.88102 -11.76791 -11.60796 -11.21933 -11.14903 -10.99531 -10.83649 -10.69798 -10.56470 -10.22887 -9.80939 -9.70872 -9.37480 -9.13122 -8.81451 -8.45471 -8.38554 -6.04183 -4.07102 2.78013 2.80946 3.28037 3.35806 3.39601 4.19543 4.35537 4.42218 4.48380 4.71165 4.80858 4.89198 4.97670 5.03428 5.10189 5.16512 5.25271 5.31879 5.32567 5.35596 5.46793 5.67051 5.71138 5.75879 5.79729 5.92649 5.94434 6.01351 6.03636 6.19024 6.26639 6.57194 6.73453 7.01276 7.21559 7.61468 7.63178 7.67173 7.74318 7.95056 8.31438 8.37050 9.00258 9.57571 11.07056 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.004103 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.671848 B = 6821.845440 C = 7306.281113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.145 4.145 12 C 0.081 3.919 13 H 0.096 0.904 14 N -0.831 5.831 15 C 0.551 3.449 16 O -0.540 6.540 17 N -0.631 5.631 18 C 0.126 3.874 19 C -0.131 4.131 20 C -0.131 4.131 21 C 0.120 3.880 22 C -0.133 4.133 23 C -0.131 4.131 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.351 0.649 32 H 0.349 0.651 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -17.699 -8.524 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.185 4.185 12 C -0.035 4.035 13 H 0.114 0.886 14 N -0.363 5.363 15 C 0.340 3.660 16 O -0.416 6.416 17 N -0.367 5.367 18 C 0.023 3.977 19 C -0.170 4.170 20 C -0.169 4.169 21 C 0.016 3.984 22 C -0.172 4.172 23 C -0.170 4.170 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.657 -18.551 -8.090 20.306 hybrid contribution -0.205 1.915 0.140 1.931 sum 1.452 -16.636 -7.950 18.495 Atomic orbital electron populations 1.69982 1.06080 1.26520 1.50862 1.25033 0.94841 0.99305 0.95278 0.86545 0.80125 0.83788 0.77612 1.19709 1.20998 1.20993 1.21281 0.93045 0.91054 1.50575 0.92634 1.19078 0.93918 0.91288 0.97196 1.21652 0.99113 0.93504 1.00308 1.22396 0.98329 0.95050 1.02735 1.21380 0.95354 0.91287 0.95431 0.88606 1.58689 1.28269 1.45995 1.03332 1.20306 0.78020 0.86854 0.80819 1.90651 1.57579 1.57227 1.36148 1.50529 1.56436 1.23322 1.06432 1.23574 0.91346 0.87381 0.95372 1.22926 0.99242 0.97312 0.97503 1.23001 1.00494 0.94335 0.99093 1.23809 0.96705 0.97006 0.80837 1.22957 0.94953 0.98677 1.00581 1.22918 0.97283 0.97272 0.99478 0.93040 0.96650 0.96725 0.93351 0.93114 0.91654 0.91857 0.83393 0.83759 0.86779 0.91361 0.90500 0.91142 0.90278 0.86193 0.90691 0.90286 0.90492 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.09 4.92 -26.73 -0.13 -2.22 16 11 C -0.15 -2.42 4.84 -26.73 -0.13 -2.55 16 12 C 0.08 1.20 2.72 -68.87 -0.19 1.02 16 13 H 0.10 1.32 7.61 -51.93 -0.40 0.92 16 14 N -0.83 -12.48 8.94 -5.65 -0.05 -12.53 16 15 C 0.55 8.79 7.25 -10.99 -0.08 8.71 16 16 O -0.54 -10.42 16.85 5.56 0.09 -10.33 16 17 N -0.63 -8.05 2.91 -146.03 -0.42 -8.48 16 18 C 0.13 1.32 5.29 -62.82 -0.33 0.99 16 19 C -0.13 -1.08 6.43 -24.23 -0.16 -1.24 16 20 C -0.13 -1.05 6.47 -24.01 -0.16 -1.21 16 21 C 0.12 1.20 5.00 -62.57 -0.31 0.88 16 22 C -0.13 -1.22 6.44 -24.23 -0.16 -1.38 16 23 C -0.13 -1.17 6.44 -24.26 -0.16 -1.33 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.07 8.11 -51.93 -0.42 0.64 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.35 4.88 7.55 -39.29 -0.30 4.58 16 32 H 0.35 5.42 8.58 -39.29 -0.34 5.08 16 33 H 0.11 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.49 7.82 -51.93 -0.41 0.08 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16 38 H 0.12 1.19 7.54 -51.93 -0.39 0.80 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.57 7.82 -51.93 -0.41 0.17 16 41 H 0.08 0.53 7.82 -51.93 -0.41 0.12 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -32.54 335.05 -9.13 -41.68 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.17 Total: 5.43 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.35 Total: -11.23 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.26 Total: -47.01 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.54 -9.13 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709473024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.088 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds