Wall clock time and date at job start Mon Mar 30 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86798 * 119.99782 * 2 1 4 4 H 1.48505 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47044 * 299.99296 * 3 2 1 6 6 H 1.48495 * 109.47500 * 60.00188 * 3 2 1 7 7 C 1.37873 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99448 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00432 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.46910 * 305.00090 * 12 11 10 14 14 N 1.46899 * 109.47285 * 64.99779 * 12 11 10 15 15 C 1.50699 * 109.47314 * 184.99952 * 12 11 10 16 16 O 1.21275 * 120.00242 * 260.00446 * 15 12 11 17 17 N 1.34772 * 119.99712 * 79.99619 * 15 12 11 18 18 C 1.50239 * 130.83914 * 180.02562 * 17 15 12 19 19 C 1.55846 * 101.05244 * 233.99464 * 18 17 15 20 20 C 1.54853 * 103.58572 * 326.98013 * 19 18 17 21 21 C 1.50240 * 130.84170 * 0.03465 * 17 15 12 22 22 C 1.55848 * 101.05223 * 233.94148 * 21 17 15 23 23 C 1.54853 * 103.44271 * 327.06424 * 22 21 17 24 24 H 0.97000 * 119.99509 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47483 * 59.99772 * 9 7 2 26 26 H 1.08999 * 109.46978 * 299.99896 * 9 7 2 27 27 H 1.09000 * 109.47211 * 60.00303 * 10 9 7 28 28 H 1.08999 * 109.47166 * 299.99893 * 10 9 7 29 29 H 1.09000 * 109.46719 * 60.00100 * 11 10 9 30 30 H 1.08999 * 109.47062 * 300.00055 * 11 10 9 31 31 H 1.00903 * 111.00166 * 296.05375 * 14 12 11 32 32 H 1.00901 * 110.99613 * 59.99928 * 14 12 11 33 33 H 1.09008 * 115.85480 * 359.66424 * 18 17 15 34 34 H 1.09002 * 110.62915 * 85.55029 * 19 18 17 35 35 H 1.08994 * 110.62469 * 208.41013 * 19 18 17 36 36 H 1.08998 * 110.62783 * 118.56957 * 20 19 18 37 37 H 1.08998 * 110.62556 * 241.59208 * 20 19 18 38 38 H 1.08999 * 115.85638 * 359.61827 * 21 17 15 39 39 H 1.09005 * 110.62147 * 85.54727 * 22 21 17 40 40 H 1.08990 * 110.63004 * 208.41380 * 22 21 17 41 41 H 1.09005 * 110.62400 * 241.50479 * 23 22 21 42 42 H 1.08998 * 110.62876 * 118.48908 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0005 13 1 3.1579 -6.0432 -0.8418 14 7 3.2385 -6.1418 1.2552 15 6 1.7249 -7.4517 -0.1227 16 8 1.5133 -8.1252 0.8634 17 7 1.2897 -7.8671 -1.3286 18 6 0.5312 -9.1010 -1.7278 19 6 1.4570 -9.6729 -2.8435 20 6 2.0589 -8.4068 -3.5012 21 6 1.4139 -7.2390 -2.6878 22 6 -0.0773 -7.2079 -3.1399 23 6 -0.6782 -8.4765 -2.4859 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.8002 -5.3071 1.3310 32 1 2.6267 -6.2396 2.0516 33 1 0.2868 -9.7909 -0.9200 34 1 2.2432 -10.2914 -2.4104 35 1 0.8769 -10.2435 -3.5686 36 1 3.1436 -8.3973 -3.3944 37 1 1.7750 -8.3481 -4.5519 38 1 1.9362 -6.2830 -2.7238 39 1 -0.5731 -6.3119 -2.7665 40 1 -0.1504 -7.2615 -4.2260 41 1 -1.0495 -9.1620 -3.2477 42 1 -1.4721 -8.2096 -1.7884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709473024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:54 Heat of formation + Delta-G solvation = -59.928310 kcal Electronic energy + Delta-G solvation = -20778.532745 eV Core-core repulsion = 17756.949041 eV Total energy + Delta-G solvation = -3021.583704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77519 -39.66762 -37.37159 -35.28643 -33.03202 -32.58030 -31.36346 -30.46977 -29.39519 -27.03941 -24.75869 -23.09813 -23.03945 -21.81862 -20.56367 -19.89491 -18.70541 -18.47445 -16.83799 -16.56712 -16.51777 -16.36869 -16.23381 -15.54195 -15.26341 -14.54835 -14.35687 -14.05409 -13.98563 -13.68957 -13.61858 -13.43045 -13.07341 -12.91019 -12.64990 -12.60062 -12.38935 -12.38014 -12.23002 -11.89232 -11.66255 -11.54543 -11.45243 -11.25642 -10.95830 -10.76645 -10.57602 -9.85708 -9.70787 -8.21180 -6.32604 1.39904 1.40609 1.53483 1.56442 1.82916 2.40371 3.12476 3.29476 3.58642 3.60185 3.74311 3.81406 3.93721 4.01115 4.11023 4.24069 4.28005 4.35398 4.40840 4.47414 4.55575 4.57478 4.68672 4.71493 4.96036 5.04029 5.06274 5.08052 5.13694 5.19925 5.21251 5.25375 5.36973 5.42331 5.50174 5.69899 5.83175 6.00594 6.22332 6.43879 6.60563 6.85142 7.13007 7.37421 8.90791 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.004103 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.671848 B = 6821.845440 C = 7306.281113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.093 4.093 11 C -0.130 4.130 12 C 0.091 3.909 13 H 0.115 0.885 14 N -0.832 5.832 15 C 0.542 3.458 16 O -0.585 6.585 17 N -0.633 5.633 18 C 0.111 3.889 19 C -0.123 4.123 20 C -0.123 4.123 21 C 0.109 3.891 22 C -0.131 4.131 23 C -0.125 4.125 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.017 1.017 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.357 0.643 32 H 0.345 0.655 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -17.995 -10.637 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.170 4.170 12 C -0.024 4.024 13 H 0.133 0.867 14 N -0.364 5.364 15 C 0.331 3.669 16 O -0.465 6.465 17 N -0.368 5.368 18 C 0.009 3.991 19 C -0.161 4.161 20 C -0.161 4.161 21 C 0.007 3.993 22 C -0.169 4.169 23 C -0.163 4.163 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.001 0.999 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.973 -18.857 -10.254 21.670 hybrid contribution -0.673 1.978 0.769 2.226 sum 2.300 -16.879 -9.485 19.498 Atomic orbital electron populations 1.70118 1.07897 1.27670 1.51865 1.25994 0.95717 1.03437 0.94753 0.85403 0.79216 0.78778 0.77690 1.18324 1.20328 1.20696 1.21736 0.93664 0.92215 1.50241 0.91826 1.18990 0.94415 0.93280 0.94547 1.21426 0.97928 0.92364 1.01305 1.22189 0.98257 0.94635 1.01933 1.21295 0.94942 0.90154 0.96057 0.86745 1.58700 1.28174 1.46305 1.03230 1.20414 0.78189 0.86924 0.81345 1.90620 1.59541 1.58517 1.37821 1.50695 1.55220 1.24273 1.06572 1.23818 0.92598 0.86723 0.95927 1.22911 0.98738 0.97483 0.96957 1.23007 1.00228 0.92720 1.00109 1.24111 0.97775 0.97922 0.79488 1.22980 0.93933 0.97743 1.02254 1.22912 0.96031 0.97717 0.99635 0.92846 0.98919 0.99878 0.92631 0.91675 0.91477 0.93746 0.82702 0.84215 0.88327 0.92155 0.87652 0.91278 0.87483 0.86189 0.92788 0.87358 0.87406 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.56 4.92 30.60 0.15 -3.41 16 11 C -0.13 -4.38 4.84 30.60 0.15 -4.23 16 12 C 0.09 2.67 2.72 44.17 0.12 2.79 16 13 H 0.11 2.95 7.61 -2.38 -0.02 2.93 16 14 N -0.83 -24.76 8.94 -171.80 -1.54 -26.30 16 15 C 0.54 17.46 7.25 87.66 0.64 18.10 16 16 O -0.58 -23.30 16.85 -3.01 -0.05 -23.35 16 17 N -0.63 -15.83 2.91 -734.31 -2.13 -17.96 16 18 C 0.11 2.23 5.29 46.21 0.24 2.47 16 19 C -0.12 -1.68 6.43 32.21 0.21 -1.47 16 20 C -0.12 -1.56 6.47 32.36 0.21 -1.35 16 21 C 0.11 1.97 5.00 46.38 0.23 2.20 16 22 C -0.13 -2.13 6.44 32.21 0.21 -1.92 16 23 C -0.12 -2.02 6.44 32.20 0.21 -1.81 16 24 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 25 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H 0.06 2.06 6.87 -2.39 -0.02 2.04 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.36 9.62 7.55 -89.69 -0.68 8.94 16 32 H 0.34 10.90 8.58 -89.69 -0.77 10.13 16 33 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 0.88 7.82 -2.39 -0.02 0.86 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 0.83 7.82 -2.39 -0.02 0.81 16 38 H 0.12 2.16 7.54 -2.39 -0.02 2.14 16 39 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.11 1.15 7.82 -2.39 -0.02 1.14 16 41 H 0.11 1.10 7.82 -2.38 -0.02 1.08 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -71.80 335.05 1.36 -70.44 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.44 Total: 24.72 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 3.21 Total: -16.79 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -3.38 Total: -100.77 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -71.80 1.36 -70.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709473024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.513 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds